rbbt-util 5.20.13 → 5.20.14

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 841046995ec2cd9dda2e965c39eb088c77460d72
-  data.tar.gz: 5f07ff9767eaf96377ff5dc1ed222599e111486d
+  metadata.gz: 7b5585c1845795e5a7c874e332091305114e4ee7
+  data.tar.gz: 9b66bcf3e909d67e240419b4492ebfb5a418185a
 SHA512:
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-  data.tar.gz: 19e701161b6b0c8b7cf74e508b18365d94c53af2783441145afda1673dd38f45c16a17ef64527a5d99484246c9e80a64ec780edefbe95ed39028812abdd145ca
+  metadata.gz: a4b43d8d9cf4506820dfbb6171527a98dd2cdfde10da40291f63c0ebb6c30c7359b1464ec35199d1d370da8175263986c957ccd72d684bed0f53be0e378f6202
+  data.tar.gz: 8439f337004a4b65353b63535343e42fa1f37075a2f71dfccf90c130615e4a9c46eefb93e7c60b2b23ab7e11d3a4b991a6680faff6593914719344e611258250

data/lib/rbbt/rest/client/step.rb

@@ -253,6 +253,10 @@ class WorkflowRESTClient
               end
             end
           end
+
+          if Array === v and v.empty?
+            inputs[k] = "EMPTY_ARRAY"
+          end
         end
         task_params = inputs.merge(:_cache_type => cache_type, :jobname => base_name, :_format => [:string, :boolean, :tsv, :annotations].include?(result_type) ? :raw : :json)
 

data/lib/rbbt/tsv/manipulate.rb

@@ -191,7 +191,7 @@ module TSV
 
         case type
         when :double, :list
-          Log.warn "Value frozen: #{ value }" if value.frozen?
+          #Log.warn "Value frozen: #{ value }" if value.frozen?
 
           value.nil? ?
             nil :

data/lib/rbbt/util/misc/pipes.rb

@@ -215,6 +215,7 @@ module Misc
       stream.clear
     end
     tee1, *rest = Misc.tee_stream stream_dup, num + 1
+    stream.reopen(tee1)
     rest
   end
 

data/test/rbbt/workflow/step/test_dependencies.rb

@@ -120,7 +120,9 @@ class TestWorkflowDependency < Test::Unit::TestCase
     last_line = nil
     TmpFile.with_file(content) do |input_file|
       job = DepWorkflow.job(:task4, "TEST", :input_file => input_file)
-      io = TSV.get_stream job.run(:stream) while line = io.gets last_line = line.strip
+      io = TSV.get_stream job.run(:stream) 
+      while line = io.gets 
+        last_line = line.strip
       end
       io.join
     end

data/test/rbbt/workflow/test_step.rb

@@ -148,13 +148,17 @@ class TestStep < Test::Unit::TestCase
       end
     end
   end
+
+  def test_messages
+    TmpFile.with_file do |lock|
+
       task  = Task.setup do 
         message "WRITE"
         Open.write(file("test"),"TEST")
         Open.write(path,"done")
         nil
       end
-      
+
       TmpFile.with_file do |tmp|
         step = Step.new tmp, task
         job = step

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.20.13
+  version: 5.20.14
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2016-06-17 00:00:00.000000000 Z
+date: 2016-06-18 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake