rbbt-util 5.19.19 → 5.19.20

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: a1c106d7f3ec1535abec1883fd465cee9c60ce1f
-  data.tar.gz: 31d9d1fc96bf50f6fa6c9f5b566d82fb10bc9f06
+  metadata.gz: 3cc27beb6c6dcec86da8a9864ceb2f2e29bb9fe0
+  data.tar.gz: 8e7ef407be5734415e5b37fb986a3c2b8727cdc8
 SHA512:
-  metadata.gz: b7f0d24616ceed78fa2671f40ce3e0a9221b6739a0a65f09783dece72d74b661ca54f480b930059bda643c446f1a28e9c81b9deba534fe09ae23dd0a8f8955f8
-  data.tar.gz: 0802e21fe07e9f3fedfe244c3456106edfb74733cfbad4e092faea47e1734faa212605169222e7bccadc68d05c7f9a3794912af4c294ff462d1a246bf8db8f7b
+  metadata.gz: 5df62f3fc2a24c1abbf7e17b85308b780157a01a18d0112c8cfdcb75d7c4904fb3c410190faf74981d585d7d15e1607f06408dbd178246cfe6439af12e6813f5
+  data.tar.gz: a5cf866869dc753912df0abc3f9c846c922617c9eaa674a05c20a90a42f774e6ff17d3fba5838889070bc7f62a0d87f4c4da955720afd0a42defdeb15e9b2d2d

data/lib/rbbt/tsv/change_id.rb

@@ -13,7 +13,7 @@ module TSV
     if not tsv.fields.include? format
       new = {}
       tsv.each do |k,v|
-        new[k] = v.dup
+        new[k] = v.dup if v === String or v === Array
       end
       orig_fields = tsv.fields
       tsv = tsv.annotate new

data/lib/rbbt/util/R/plot.rb

@@ -114,8 +114,8 @@ data = NULL
     end
 
     def self.plot(filename, data, script = nil, width = nil, height = nil, options = {})
-      width ||= 3
-      height ||= 3
+      width ||= 200
+      height ||= 200
       values = []
 
       sources = [:plot, options[:source]].flatten.compact

data/lib/rbbt/util/colorize.rb

@@ -32,8 +32,9 @@ module Colorize
     times = num / 12
 
     all_colors = colors.dup
+    factor = 0.3 / times
     times.times do
-      all_colors.concat  colors.collect{|n| n.darken(0.2) }
+      all_colors.concat  colors.collect{|n| n.darken(factor) }
     end
 
     value_color = Hash[*array.uniq.zip(all_colors).flatten]

data/lib/rbbt/workflow/accessor.rb

@@ -242,7 +242,7 @@ class Step
     Step.log_progress(status, options, file(:progress), &block)
   end
 
-  def progress_bar(msg, options = {})
+  def progress_bar(msg = "Progress", options = {})
     max = options[:max]
     Log::ProgressBar.new_bar(max, {:desc => msg, :file => file(:progress)}.merge(options))
   end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.19.19
+  version: 5.19.20
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2016-03-14 00:00:00.000000000 Z
+date: 2016-03-21 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake