rbbt-util 5.17.71 → 5.17.72

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 257d69c8b2bd1dd30b2140f0bf8a12da6d98cf05
-  data.tar.gz: 87ced61d3865d938fb316bef1cd99b0a2a842cb6
+  metadata.gz: 2e1d275776b5d5c6b1a96c42b7f7b169aa90d5d7
+  data.tar.gz: 0e06e1efe4a852f4bb9351459867f4c1bf5fe03c
 SHA512:
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+  metadata.gz: 3452297dc3f1ff5508d36d5296ce3aa0e6775ce2db851e5be21f9e84612e6a4ff01ec27cf23e5fe67efbac50aca683e40d71e0d90d81437acbe85404dcd183d7
+  data.tar.gz: 441b3b7e835d16a9a8f97118b97d1adcc85bef6f1fadcd199fd08657148b7d98983656a7639e39de247d227bc9f32cf3771ae8e505cbbe9527fb2c7ca95ec5e7

data/etc/app.d/finder.rb

@@ -8,6 +8,9 @@ if ENV['RBBT_FINDER']
   mutation_hash = {"Genomic Mutation" => /\w+:\d+:[ACTG\-\+]+/}
   finder.add_instance(mutation_hash, :namespace => organism) 
 
+  mi_hash = {"Mutated Isoform" => /ENSP\w+:.+/}
+  finder.add_instance(mi_hash, :namespace => organism) 
+
   organism_hash = {"organism" => /[A-Z][a-z]{2}(?:\/[a-z]{3}20\d\d)?/}
   finder.add_instance(organism_hash, :namespace => organism) 
 end

data/lib/rbbt/tsv/attach.rb

@@ -181,7 +181,7 @@ module TSV
 
     unless TSV === other
       other_identifier_file = other.identifier_files.first if other.respond_to? :identifier_files
-      other = TSV.open(other, :persist => options[:persist_input] == true)
+      other = TSV.open(other, :persist => options[:persist_input].to_s == "true")
       other.identifiers ||= other_identifier_file
     end
 

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.17.71
+  version: 5.17.72
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2015-08-25 00:00:00.000000000 Z
+date: 2015-09-03 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake