rbbt-util 5.17.71 → 5.17.72
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/etc/app.d/finder.rb +3 -0
- data/lib/rbbt/tsv/attach.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
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---
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 2e1d275776b5d5c6b1a96c42b7f7b169aa90d5d7
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4
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data.tar.gz: 0e06e1efe4a852f4bb9351459867f4c1bf5fe03c
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SHA512:
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-
metadata.gz:
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-
data.tar.gz:
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6
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+
metadata.gz: 3452297dc3f1ff5508d36d5296ce3aa0e6775ce2db851e5be21f9e84612e6a4ff01ec27cf23e5fe67efbac50aca683e40d71e0d90d81437acbe85404dcd183d7
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7
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data.tar.gz: 441b3b7e835d16a9a8f97118b97d1adcc85bef6f1fadcd199fd08657148b7d98983656a7639e39de247d227bc9f32cf3771ae8e505cbbe9527fb2c7ca95ec5e7
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data/etc/app.d/finder.rb
CHANGED
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@@ -8,6 +8,9 @@ if ENV['RBBT_FINDER']
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mutation_hash = {"Genomic Mutation" => /\w+:\d+:[ACTG\-\+]+/}
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finder.add_instance(mutation_hash, :namespace => organism)
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+
mi_hash = {"Mutated Isoform" => /ENSP\w+:.+/}
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finder.add_instance(mi_hash, :namespace => organism)
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+
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organism_hash = {"organism" => /[A-Z][a-z]{2}(?:\/[a-z]{3}20\d\d)?/}
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finder.add_instance(organism_hash, :namespace => organism)
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end
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data/lib/rbbt/tsv/attach.rb
CHANGED
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@@ -181,7 +181,7 @@ module TSV
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unless TSV === other
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other_identifier_file = other.identifier_files.first if other.respond_to? :identifier_files
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-
other = TSV.open(other, :persist => options[:persist_input] == true)
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other = TSV.open(other, :persist => options[:persist_input].to_s == "true")
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other.identifiers ||= other_identifier_file
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: rbbt-util
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version: !ruby/object:Gem::Version
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-
version: 5.17.
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+
version: 5.17.72
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2015-
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+
date: 2015-09-03 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rake
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