rbbt-util 5.16.3 → 5.17.0
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- checksums.yaml +4 -4
- data/lib/rbbt/association/item.rb +16 -6
- data/lib/rbbt/knowledge_base/entity.rb +2 -2
- data/lib/rbbt/knowledge_base/query.rb +1 -0
- data/lib/rbbt/knowledge_base/traverse.rb +105 -0
- data/lib/rbbt/tsv/attach.rb +22 -15
- data/lib/rbbt/tsv/parallel/traverse.rb +6 -0
- data/lib/rbbt/util/log/progress.rb +3 -2
- data/lib/rbbt/util/log/progress/report.rb +7 -0
- data/lib/rbbt/workflow/accessor.rb +10 -2
- data/lib/rbbt/workflow/step/run.rb +3 -0
- data/share/rbbt_commands/app/template +43 -43
- data/share/rbbt_commands/workflow/server +10 -1
- data/test/rbbt/knowledge_base/test_traverse.rb +19 -0
- metadata +5 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: 0077c74cde35411d5404cfef3280cbf2364d916c
|
4
|
+
data.tar.gz: 0c5c8378d8a78fe1341c17cad09d88652714899c
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 42f65b06e9cc69f73efc641c01693ebbeeb2d149888d78a06e3466c5dc09da467c4a36bc4cd6670839de121d1aae51c7d719f6ac6010b93b6ea43c63307d3456
|
7
|
+
data.tar.gz: e4888af1096ab853bf2b30eaa72f98ba3c7c6026914e974f7e4ca49596b389112552ef71f14df6d251ce959faabddcc9b76c613bbe05ff62682923ad68385f92
|
@@ -1,7 +1,7 @@
|
|
1
1
|
require 'rbbt/entity'
|
2
2
|
|
3
3
|
module AssociationItem
|
4
|
-
extend Entity
|
4
|
+
extend Object::Entity
|
5
5
|
|
6
6
|
annotation :knowledge_base
|
7
7
|
annotation :database
|
@@ -15,11 +15,21 @@ module AssociationItem
|
|
15
15
|
database ? [database, name] * ":" : name
|
16
16
|
end
|
17
17
|
|
18
|
-
property :invert => :
|
19
|
-
|
20
|
-
|
21
|
-
|
22
|
-
|
18
|
+
property :invert => :both do
|
19
|
+
if Array === self
|
20
|
+
inverted = self.collect do |item|
|
21
|
+
s,_sep,t= item.partition "~"
|
22
|
+
new = [t,s] * _sep
|
23
|
+
end
|
24
|
+
self.annotate inverted
|
25
|
+
inverted.reverse = ! reverse
|
26
|
+
inverted
|
27
|
+
else
|
28
|
+
s,_sep,t= self.partition "~"
|
29
|
+
inverted = self.annotate([t,s] * _sep)
|
30
|
+
inverted.reverse = ! reverse
|
31
|
+
inverted
|
32
|
+
end
|
23
33
|
end
|
24
34
|
|
25
35
|
property :namespace => :both do
|
@@ -81,7 +81,7 @@ class KnowledgeBase
|
|
81
81
|
def target_index(name)
|
82
82
|
Persist.memory("Target index #{name}: KB directory #{dir}") do
|
83
83
|
identifier_files = identifier_files(name)
|
84
|
-
identifier_files.concat Entity.identifier_files(
|
84
|
+
identifier_files.concat Entity.identifier_files(target(name)) if defined? Entity
|
85
85
|
identifier_files.uniq!
|
86
86
|
identifier_files.collect!{|f| f.annotate(f.gsub(/\bNAMESPACE\b/, namespace))} if namespace
|
87
87
|
identifier_files.reject!{|f| f.match(/\bNAMESPACE\b/)}
|
@@ -100,7 +100,7 @@ class KnowledgeBase
|
|
100
100
|
def identify_target(name, entity)
|
101
101
|
return :all if entity == :all
|
102
102
|
index = target_index(name)
|
103
|
-
return
|
103
|
+
return entity if index.nil?
|
104
104
|
Array === entity ? index.values_at(*entity) : index[entity]
|
105
105
|
end
|
106
106
|
|
@@ -0,0 +1,105 @@
|
|
1
|
+
require 'rbbt-util'
|
2
|
+
require 'rbbt/knowledge_base'
|
3
|
+
|
4
|
+
class KnowledgeBase
|
5
|
+
|
6
|
+
class Traverser
|
7
|
+
attr_accessor :rules, :assignments, :matches, :kb
|
8
|
+
|
9
|
+
def initialize(kb, rules = [])
|
10
|
+
@kb = kb
|
11
|
+
@rules = rules
|
12
|
+
@assignments = {}
|
13
|
+
@matches = {}
|
14
|
+
end
|
15
|
+
|
16
|
+
def wildcard(name)
|
17
|
+
return name unless is_wildcard?(name)
|
18
|
+
assignments[name] || name
|
19
|
+
end
|
20
|
+
|
21
|
+
def is_wildcard?(name)
|
22
|
+
name[0] == '?'
|
23
|
+
end
|
24
|
+
|
25
|
+
def identify(db, source, target)
|
26
|
+
source_entities = if is_wildcard? source
|
27
|
+
assignments[source] || :all
|
28
|
+
else
|
29
|
+
kb.identify_source db, source
|
30
|
+
end
|
31
|
+
|
32
|
+
target_entities = if is_wildcard? target
|
33
|
+
assignments[target] || :all
|
34
|
+
else
|
35
|
+
kb.identify_target db, target
|
36
|
+
end
|
37
|
+
|
38
|
+
source_entities = [source_entities] unless Array === source_entities or source_entities == :all
|
39
|
+
target_entities = [target_entities] unless Array === target_entities or target_entities == :all
|
40
|
+
|
41
|
+
[source_entities, target_entities]
|
42
|
+
end
|
43
|
+
|
44
|
+
def reassign(matches, source, target)
|
45
|
+
assignments[source] = (matches.any? ? matches.source.uniq : []) if is_wildcard? source
|
46
|
+
assignments[target] = (matches.any? ? matches.target.uniq : []) if is_wildcard? target
|
47
|
+
end
|
48
|
+
|
49
|
+
def find_paths(rules, all_matches, assignments)
|
50
|
+
paths = {}
|
51
|
+
|
52
|
+
rules.zip(all_matches).each do |rule, matches|
|
53
|
+
source, db, target = rule.split /\s+/
|
54
|
+
if is_wildcard? source
|
55
|
+
assigned = assignments[source]
|
56
|
+
matches = matches.select{|m| assigned.include? m.source }
|
57
|
+
end
|
58
|
+
|
59
|
+
if is_wildcard? target
|
60
|
+
assigned = assignments[target]
|
61
|
+
matches = matches.select{|m| assigned.include? m.target }
|
62
|
+
end
|
63
|
+
|
64
|
+
paths[rule] = matches
|
65
|
+
end
|
66
|
+
paths
|
67
|
+
end
|
68
|
+
|
69
|
+
def traverse
|
70
|
+
all_matches = []
|
71
|
+
rules.each do |rule|
|
72
|
+
rule = rule.strip
|
73
|
+
next if rule.empty?
|
74
|
+
source, db, target, conditions = rule.match(/([^\s]+)\s+([^\s]+)\s+([^\s]+)(?:\s+-\s+([^\s]+))?/).captures
|
75
|
+
|
76
|
+
source_entities, target_entities = identify db, source, target
|
77
|
+
|
78
|
+
matches = kb.subset(db, :source => source_entities, :target => target_entities)
|
79
|
+
if conditions
|
80
|
+
conditions.split(/\s+/).each do |condition|
|
81
|
+
if condition.index "="
|
82
|
+
key, value = conditions.split("=")
|
83
|
+
matches = matches.select{|m| m.info[key.strip].to_s =~ /\b#{value.strip}\b/}
|
84
|
+
else
|
85
|
+
matches = matches.select{|m| m.info[condition.strip].to_s =~ /\btrue\b/}
|
86
|
+
end
|
87
|
+
end
|
88
|
+
end
|
89
|
+
|
90
|
+
reassign matches, source, target
|
91
|
+
all_matches << matches
|
92
|
+
end
|
93
|
+
|
94
|
+
paths = find_paths rules, all_matches, assignments
|
95
|
+
|
96
|
+
[assignments, paths]
|
97
|
+
end
|
98
|
+
end
|
99
|
+
|
100
|
+
def traverse(rules)
|
101
|
+
traverser = KnowledgeBase::Traverser.new self, rules
|
102
|
+
traverser.traverse
|
103
|
+
end
|
104
|
+
|
105
|
+
end
|
data/lib/rbbt/tsv/attach.rb
CHANGED
@@ -195,21 +195,28 @@ module TSV
|
|
195
195
|
other_filename = other.respond_to?(:filename) ? other.filename : other.inspect
|
196
196
|
Log.low("Attaching fields:#{Misc.fingerprint fields } from #{other_filename}.")
|
197
197
|
|
198
|
-
|
199
|
-
|
200
|
-
|
201
|
-
|
202
|
-
|
203
|
-
|
204
|
-
|
205
|
-
|
206
|
-
|
207
|
-
|
208
|
-
|
209
|
-
|
210
|
-
|
211
|
-
|
212
|
-
|
198
|
+
same_key = true
|
199
|
+
begin
|
200
|
+
case
|
201
|
+
when (key_field == other.key_field and same_key)
|
202
|
+
Log.debug "Attachment with same key: #{other.key_field}"
|
203
|
+
attach_same_key other, fields
|
204
|
+
when (not in_namespace and self.fields.include?(other.key_field))
|
205
|
+
Log.debug "Found other key field: #{other.key_field}"
|
206
|
+
attach_source_key other, other.key_field, :fields => fields, :one2one => one2one
|
207
|
+
when (in_namespace and self.fields_in_namespace.include?(other.key_field))
|
208
|
+
Log.debug "Found other key field in #{in_namespace}: #{other.key_field}"
|
209
|
+
attach_source_key other, other.key_field, :fields => fields, :one2one => one2one
|
210
|
+
else
|
211
|
+
index = TSV.find_traversal(self, other, options)
|
212
|
+
raise FieldNotFoundError, "Cannot traverse identifiers" if index.nil?
|
213
|
+
Log.debug "Attachment with index: #{other.key_field}"
|
214
|
+
attach_index other, index, fields
|
215
|
+
end
|
216
|
+
rescue Exception
|
217
|
+
Log.exception $!
|
218
|
+
same_key = false
|
219
|
+
retry
|
213
220
|
end
|
214
221
|
Log.debug("Attachment of fields:#{Misc.fingerprint fields } from #{other.filename.inspect} finished.")
|
215
222
|
|
@@ -535,6 +535,9 @@ module TSV
|
|
535
535
|
bar = Misc.process_options options, :bar
|
536
536
|
bar ||= Misc.process_options options, :progress
|
537
537
|
options[:bar] = case bar
|
538
|
+
when Step
|
539
|
+
max = guess_max(obj)
|
540
|
+
Log::ProgressBar.new_bar(max, {:desc => bar.status, :file => bar.file(:progress)})
|
538
541
|
when String
|
539
542
|
max = guess_max(obj)
|
540
543
|
Log::ProgressBar.new_bar(max, {:desc => bar})
|
@@ -547,6 +550,9 @@ module TSV
|
|
547
550
|
when Hash
|
548
551
|
max = Misc.process_options(bar, :max) || max
|
549
552
|
Log::ProgressBar.new_bar(max, bar)
|
553
|
+
when Log::ProgressBar
|
554
|
+
bar.max ||= guess_max(obj)
|
555
|
+
bar
|
550
556
|
else
|
551
557
|
bar
|
552
558
|
end
|
@@ -4,10 +4,10 @@ require 'rbbt/util/log/progress/report'
|
|
4
4
|
module Log
|
5
5
|
class ProgressBar
|
6
6
|
|
7
|
-
attr_accessor :max, :ticks, :frequency, :depth, :desc
|
7
|
+
attr_accessor :max, :ticks, :frequency, :depth, :desc, :file
|
8
8
|
def initialize(max = nil, options = {})
|
9
9
|
options = Misc.add_defaults options, :depth => 0, :num_reports => 100, :desc => "Progress", :io => STDERR, :severity => Log.severity
|
10
|
-
depth, num_reports, desc, io, severity = Misc.process_options options, :depth, :num_reports, :desc, :io, :severity
|
10
|
+
depth, num_reports, desc, io, severity, file = Misc.process_options options, :depth, :num_reports, :desc, :io, :severity, :file
|
11
11
|
|
12
12
|
@max = max
|
13
13
|
@ticks = 0
|
@@ -17,6 +17,7 @@ module Log
|
|
17
17
|
@last_percent = nil
|
18
18
|
@depth = depth
|
19
19
|
@desc = desc
|
20
|
+
@file = file
|
20
21
|
end
|
21
22
|
|
22
23
|
def percent
|
@@ -90,6 +90,11 @@ module Log
|
|
90
90
|
str
|
91
91
|
end
|
92
92
|
|
93
|
+
def save
|
94
|
+
info = {:start => @start, :last_time => @last_time, :last_count => @last_count, :last_percent => @last_percent, :desc => @desc, :ticks => @ticks, :max => @max}
|
95
|
+
Open.write(@file, info.to_yaml)
|
96
|
+
end
|
97
|
+
|
93
98
|
def report(io = STDERR)
|
94
99
|
if Log::LAST != "progress"
|
95
100
|
length = Log::ProgressBar.cleanup_bars
|
@@ -106,6 +111,7 @@ module Log
|
|
106
111
|
@last_time = Time.now
|
107
112
|
@last_count = ticks
|
108
113
|
@last_percent = percent if max
|
114
|
+
save if @file
|
109
115
|
end
|
110
116
|
|
111
117
|
def done(io = STDERR)
|
@@ -121,6 +127,7 @@ module Log
|
|
121
127
|
@last_time = @start
|
122
128
|
done_msg << " (" << thr_msg << ")"
|
123
129
|
print(io, up_lines(@depth) << done_msg << down_lines(@depth))
|
130
|
+
Open.rm @file if @file and Open.exists? @file
|
124
131
|
end
|
125
132
|
end
|
126
133
|
end
|
@@ -211,8 +211,8 @@ class Step
|
|
211
211
|
end
|
212
212
|
end
|
213
213
|
|
214
|
-
def self.log_progress(status, options, path, &block)
|
215
|
-
options = Misc.add_defaults options, :severity => Log::INFO
|
214
|
+
def self.log_progress(status, options = {}, path = nil, &block)
|
215
|
+
options = Misc.add_defaults options, :severity => Log::INFO, :file => path
|
216
216
|
max = Misc.process_options options, :max
|
217
217
|
Log::ProgressBar.with_bar(max, options) do |bar|
|
218
218
|
begin
|
@@ -225,6 +225,14 @@ class Step
|
|
225
225
|
end
|
226
226
|
end
|
227
227
|
|
228
|
+
def log_progress(status, options = {}, &block)
|
229
|
+
Step.log_progress(status, options, file(:progress), &block)
|
230
|
+
end
|
231
|
+
|
232
|
+
def progress_bar(msg, options = {})
|
233
|
+
Log::ProgressBar.new nil, {:desc => msg, :file => file(:progress)}.merge(options)
|
234
|
+
end
|
235
|
+
|
228
236
|
def self.log(status, message, path, &block)
|
229
237
|
if block
|
230
238
|
if Hash === message
|
@@ -134,6 +134,9 @@ class Step
|
|
134
134
|
dependency.dup_inputs
|
135
135
|
end
|
136
136
|
|
137
|
+
return if @seen.empty?
|
138
|
+
|
139
|
+
log :dependencies, "#{Log.color :magenta, "Dependencies"} #{Log.color :yellow, task.name.to_s || ""}"
|
137
140
|
@seen.each do |dependency|
|
138
141
|
next if dependency == self
|
139
142
|
next unless dependencies.include? dependency
|
@@ -1,66 +1,66 @@
|
|
1
1
|
#!/usr/bin/env ruby
|
2
2
|
|
3
|
-
require 'rbbt'
|
4
|
-
require 'rbbt/resource'
|
5
|
-
require 'rbbt-util'
|
6
3
|
require 'rbbt/util/simpleopt'
|
4
|
+
require 'rbbt/workflow'
|
7
5
|
|
8
|
-
|
9
|
-
|
6
|
+
require 'zurb-foundation'
|
7
|
+
require 'modular-scale'
|
10
8
|
|
11
|
-
|
9
|
+
require 'rbbt/rest/main'
|
10
|
+
require 'rbbt/rest/entity'
|
11
|
+
require 'rbbt/rest/workflow'
|
12
|
+
require 'rbbt/rest/file_server'
|
13
|
+
require 'rbbt/rest/knowledge_base'
|
14
|
+
require 'rbbt/rest/helpers'
|
15
|
+
require 'rbbt/rest/web_tool'
|
12
16
|
|
13
|
-
|
17
|
+
options = SOPT.get "-e--environment*:-p--port*:-s--server*:-b--bind*:-e--environment*:-R--RServe_session*:--finder:--views*:-w--workflows*"
|
18
|
+
|
19
|
+
template = ARGV.first
|
14
20
|
|
15
|
-
|
21
|
+
template = template.sub('.haml','')
|
16
22
|
|
17
|
-
|
23
|
+
ENV["RBBT_FINDER"] = "true" if options.include?(:finder)
|
24
|
+
ENV["RServe-session"] = options[:RServe_session]
|
18
25
|
|
19
|
-
|
26
|
+
raise rbbt_usage unless template
|
20
27
|
|
21
|
-
|
22
|
-
Log.info{"Loading: " << Rbbt.etc['app.d/pre.rb'].find if Rbbt.etc['app.d/pre.rb'].exists?}
|
23
|
-
load Rbbt.etc['app.d/pre.rb'].find if Rbbt.etc['app.d/pre.rb'].exists?
|
28
|
+
$title = File.basename(template)
|
24
29
|
|
25
|
-
app.
|
26
|
-
|
27
|
-
|
30
|
+
load Rbbt.etc['app.d/init.rb'].find
|
31
|
+
|
32
|
+
app = class SingleTemplate < Sinatra::Base; self end
|
33
|
+
|
34
|
+
if options[:workflows]
|
35
|
+
app.register Sinatra::RbbtRESTWorkflow
|
36
|
+
options[:workflows].split(/[\s,]+/).each do |name|
|
37
|
+
wf = Workflow.require_workflow name
|
38
|
+
app.add_workflow wf, :all
|
39
|
+
end
|
28
40
|
end
|
29
41
|
|
30
|
-
|
31
|
-
|
32
|
-
|
33
|
-
|
42
|
+
app.register Sinatra::RbbtRESTKnowledgeBase
|
43
|
+
|
44
|
+
app.helpers Sinatra::RbbtMiscHelpers
|
45
|
+
app.helpers Sinatra::RbbtToolHelper
|
46
|
+
|
47
|
+
app.get '/' do
|
48
|
+
template_render(template, @clean_params)
|
34
49
|
end
|
50
|
+
app.instance_eval Rbbt.etc['app.d/base.rb'].read
|
51
|
+
app.use Rack::Deflater
|
35
52
|
|
36
|
-
#{{{ RESOURCES
|
37
|
-
Log.info{"Loading: " << Rbbt.etc['app.d/resources.rb'].find}
|
38
53
|
load Rbbt.etc['app.d/resources.rb'].find
|
39
54
|
|
40
|
-
#{{{ ENTITIES
|
41
|
-
Log.info{"Loading: " << Rbbt.etc['app.d/entities.rb'].find}
|
42
|
-
load Rbbt.etc['app.d/entities.rb'].find
|
43
|
-
|
44
|
-
#{{{ FINDER
|
45
55
|
app.class_eval do
|
46
|
-
Log.info{"Loading: " << Rbbt.etc['app.d/finder.rb'].find}
|
47
56
|
eval Rbbt.etc['app.d/finder.rb'].read
|
48
57
|
end
|
49
58
|
|
50
|
-
|
51
|
-
Log.info{"Loading: " << Rbbt.etc['app.d/post.rb'].find if Rbbt.etc['app.d/post.rb'].exists?}
|
52
|
-
load Rbbt.etc['app.d/post.rb'].find if Rbbt.etc['app.d/post.rb'].exists?
|
53
|
-
|
54
|
-
#{{{ RUN
|
55
|
-
$title = class_name
|
56
|
-
require 'rack'
|
57
|
-
|
58
|
-
ENV["RBBT_FINDER"] = "true" if options.include?(:finder)
|
59
|
-
ENV["RACK_ENV"] = options[:environment] if options.include?(:environment)
|
59
|
+
Sinatra::RbbtRESTMain.add_resource_path(Path.setup('/home/mvazquezg/'), true)
|
60
60
|
|
61
|
-
RbbtRESTHelpers.template_resources.unshift Path.setup(File.expand_path(File.dirname(file)))
|
62
61
|
|
63
|
-
|
64
|
-
|
65
|
-
|
66
|
-
|
62
|
+
SingleTemplate.port = options[:port] || 4567
|
63
|
+
SingleTemplate.bind = options[:bind] || "0.0.0.0"
|
64
|
+
SingleTemplate.environment = options[:environment] || "development"
|
65
|
+
SingleTemplate.server = options[:server] if options[:server]
|
66
|
+
SingleTemplate.run!
|
@@ -12,8 +12,9 @@ require 'rbbt/rest/workflow'
|
|
12
12
|
require 'rbbt/rest/file_server'
|
13
13
|
require 'rbbt/rest/knowledge_base'
|
14
14
|
require 'rbbt/rest/helpers'
|
15
|
+
require 'rbbt/rest/web_tool'
|
15
16
|
|
16
|
-
options = SOPT.get "-e--environment*:-p--port*:-s--server*:-b--bind*:-e--environment*:-R--RServe_session*:--finder:--views*"
|
17
|
+
options = SOPT.get "-e--environment*:-p--port*:-s--server*:-b--bind*:-e--environment*:-R--RServe_session*:--finder:--views*:-w--workflows*"
|
17
18
|
|
18
19
|
workflow = ARGV.first
|
19
20
|
|
@@ -32,6 +33,7 @@ app = class WorkflowRest < Sinatra::Base; self end
|
|
32
33
|
|
33
34
|
app.register Sinatra::RbbtRESTWorkflow
|
34
35
|
app.register Sinatra::RbbtRESTKnowledgeBase
|
36
|
+
app.helpers Sinatra::RbbtToolHelper
|
35
37
|
|
36
38
|
app.get '/' do
|
37
39
|
redirect to(File.join('/', wf.to_s))
|
@@ -46,6 +48,13 @@ app.class_eval do
|
|
46
48
|
end
|
47
49
|
|
48
50
|
WorkflowRest.add_workflow wf, :all
|
51
|
+
if options[:workflows]
|
52
|
+
options[:workflows].split(/[\s,]+/).each do |name|
|
53
|
+
_wf = Workflow.require_workflow name
|
54
|
+
WorkflowRest.add_workflow _wf, :all
|
55
|
+
end
|
56
|
+
end
|
57
|
+
|
49
58
|
|
50
59
|
if options[:views] and not options[:views].empty?
|
51
60
|
Sinatra::RbbtRESTMain.add_resource_path(Path.setup(options[:views]), true)
|
@@ -0,0 +1,19 @@
|
|
1
|
+
require File.join(File.expand_path(File.dirname(__FILE__)), '../..', 'test_helper.rb')
|
2
|
+
require 'rbbt/knowledge_base/traverse'
|
3
|
+
require 'rbbt/workflow'
|
4
|
+
|
5
|
+
Workflow.require_workflow "Genomics"
|
6
|
+
class TestKnowledgeBaseTraverse < Test::Unit::TestCase
|
7
|
+
def kb
|
8
|
+
Genomics.knowledge_base
|
9
|
+
end
|
10
|
+
|
11
|
+
def test_traverse
|
12
|
+
rules = []
|
13
|
+
rules << "SF3B1 pina ?1 - Method=MI:0006"
|
14
|
+
rules << "TP53 pina ?1"
|
15
|
+
res = kb.traverse rules
|
16
|
+
assert res.first.include? "?1"
|
17
|
+
end
|
18
|
+
end
|
19
|
+
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: rbbt-util
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 5.
|
4
|
+
version: 5.17.0
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Miguel Vazquez
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2015-02-
|
11
|
+
date: 2015-02-20 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: rake
|
@@ -170,6 +170,7 @@ files:
|
|
170
170
|
- lib/rbbt/knowledge_base/query.rb
|
171
171
|
- lib/rbbt/knowledge_base/registry.rb
|
172
172
|
- lib/rbbt/knowledge_base/syndicate.rb
|
173
|
+
- lib/rbbt/knowledge_base/traverse.rb
|
173
174
|
- lib/rbbt/monitor.rb
|
174
175
|
- lib/rbbt/packed_index.rb
|
175
176
|
- lib/rbbt/persist.rb
|
@@ -346,6 +347,7 @@ files:
|
|
346
347
|
- test/rbbt/knowledge_base/test_query.rb
|
347
348
|
- test/rbbt/knowledge_base/test_registry.rb
|
348
349
|
- test/rbbt/knowledge_base/test_syndicate.rb
|
350
|
+
- test/rbbt/knowledge_base/test_traverse.rb
|
349
351
|
- test/rbbt/persist/test_tsv.rb
|
350
352
|
- test/rbbt/persist/tsv/test_cdb.rb
|
351
353
|
- test/rbbt/persist/tsv/test_kyotocabinet.rb
|
@@ -465,6 +467,7 @@ test_files:
|
|
465
467
|
- test/rbbt/test_packed_index.rb
|
466
468
|
- test/rbbt/entity/test_identifiers.rb
|
467
469
|
- test/rbbt/test_association.rb
|
470
|
+
- test/rbbt/knowledge_base/test_traverse.rb
|
468
471
|
- test/rbbt/knowledge_base/test_registry.rb
|
469
472
|
- test/rbbt/knowledge_base/test_entity.rb
|
470
473
|
- test/rbbt/knowledge_base/test_enrichment.rb
|