rbbt-util 5.16.2 → 5.16.3

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: 37a629ea804ba0fe4dddfd113ea58b4334de99d8
+  metadata.gz: 944628eca69d1b9757794dd04d2e1fae618ec30f
+  data.tar.gz: 6c1cb13e51f8efa8e5360b428bf0af8059cd74db
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+  data.tar.gz: 8df2ad85ef430be6d054d524cfa5fcab8c3e48be04ad6e47659491c62da16f8a855cf955fb430dfe1e9599b338242a7499c5843b4b4ae5b44e09a7727b4abbea

data/lib/rbbt/entity/identifiers.rb

@@ -71,7 +71,7 @@ module Entity
       end
 
       base.property :default => :both do
-        to(:name)
+        to(:default)
       end
 
       base.property :ensembl => :both do

data/lib/rbbt/knowledge_base/query.rb

@@ -1,4 +1,3 @@
-require 'rbbt/entity'
 require 'rbbt/knowledge_base/registry'
 
 class KnowledgeBase

data/lib/rbbt/knowledge_base/syndicate.rb

@@ -5,7 +5,7 @@ class KnowledgeBase
       file, kb_options = kb.registry[database]
       options = {}
       options[:entity_options] = kb_options[:entity_options]
-      options[:undirected] = true if kb_options and kb_options[:undirected]
+      options[:undirected] = kb_options[:undirected] if kb_options 
       if kb.entity_options
         options[:entity_options] = kb.entity_options.merge(options[:entity_options] || {})
       end

data/lib/rbbt/tsv/stream.rb

@@ -61,8 +61,7 @@ module TSV
         fields        << parser.fields
         sizes         << parser.fields.length if parser.fields
         input_options << parser.options
-        preambles     << parser.preamble      if TrueClass === preamble and 
-                                                 not parser.preamble.empty?
+        preambles     << parser.preamble      if preamble and not parser.preamble.empty?
 
         parser.stream
       end
@@ -76,7 +75,11 @@ module TSV
                      when TrueClass
                        preambles * "\n"
                      when String
-                       preamble
+                       if preamble[0] == '+'
+                         preambles * "\n" + "\n" + preamble[1..-1]
+                       else
+                         preamble
+                       end
                      else
                        nil
                      end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.16.2
+  version: 5.16.3
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2015-01-30 00:00:00.000000000 Z
+date: 2015-02-12 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake