rbbt-util 5.14.10 → 5.14.11

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: cb5293895c8a68f418b08234e239bacadd00d4eb
-  data.tar.gz: 7e70f082d70d3ae7b878be2df3be9c36c50c33a2
+  metadata.gz: 4d027fa4dd9f82671322bbc9dad837e1c35748b5
+  data.tar.gz: 7b02a4bff8f485a0c51c6d5ddf4b0e3b329fb5da
 SHA512:
-  metadata.gz: 96960fe35a0668ece8cd3186d76c16ee0b8e05075d8b84be2d7b5bb32e4019d2b9040cb81fdd85934677394576cff10f62f7c4995a93d26e7f9ebebe2eeb90e5
-  data.tar.gz: 75814ae86c6824bd184e095c3322bd87c87e5cc67370a41d50cfce97755ad1b7895678c1d5ec38f6d0a3573dc2b6dffb253f689b35e35f90d8522dcd126f96e2
+  metadata.gz: a8efceacaed62a956f0f948c5905f5cd235ed6b8f79248120e2ebbab27219becbc3e40985d534194f515c41c1ca7a0e5b5d5f74566796aa3270279b50bad0814
+  data.tar.gz: a6115e5690df10e4f245584d2854a3c2baadfe53219b79a1bcd61bc162d479f3eb7b539ef64fbe4b5fe4ed333c22772e5a7988737b579a04b61a3146036401e5

data/lib/rbbt/association/index.rb

@@ -79,7 +79,9 @@ module Association
       if source == :all or source == "all"
         matches = keys
       else
-        matches = source.uniq.inject([]){|acc,e| acc.concat(match(e)) }
+        matches = source.uniq.inject([]){|acc,e| 
+          acc.concat(match(e)) 
+        }
       end
 
       return matches if target == :all or target == "all"
@@ -88,6 +90,7 @@ module Association
 
       matches.each{|code| 
         s,sep,t = code.partition "~"
+        next if t > s
         target_matches[t] ||= []
         target_matches[t] << code
       }

data/lib/rbbt/knowledge_base.rb

@@ -206,7 +206,8 @@ class KnowledgeBase
     @identifiers[name] ||= {}
     @identifiers[name]['source'] ||= begin
                                        if database.identifier_files.any?
-                                         if TSV.parse_header(database.identifier_files.first).all_fields.include? source
+                                         identifier_fields = TSV.parse_header(database.identifier_files.first).all_fields
+                                         if identifier_fields.include? source
                                            TSV.index(database.identifiers, :target => source, :persist => true, :order => true)
                                          else
                                            {}

data/share/rbbt_commands/workflow/knowledge_base

@@ -68,7 +68,7 @@ when :subset
   else
     matches.each do |item|
       puts Log.color(:magenta, item)
-      info = file.fields.zip(file[item])
+      info = item.info
       source,_sep, target = item.partition "~"
       puts "  " << Misc.format_definition_list_item("source", source)
       puts "  " << Misc.format_definition_list_item("target", target)

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.14.10
+  version: 5.14.11
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-07-17 00:00:00.000000000 Z
+date: 2014-07-18 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake