rbbt-util 5.13.12 → 5.13.13

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: c918ffd6618192626d6874815f0f289813184f28
-  data.tar.gz: 7b49a48b985dfc7657adc68e0eb35b7432967280
+  metadata.gz: 277f1c14f20cd7554ee5a003b6c85236421bae33
+  data.tar.gz: 3dd0c58cb609fc0e2f23f44c0346c3b11c0dc33b
 SHA512:
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-  data.tar.gz: eed1a8230a41553d1c245509d44b04856a90bb0e7bf0452f4f3e1776d1ce3a8491bd51d42c6856950cbb54da1efbb4493d09a860fc7fcc4a377654db1f14201d
+  metadata.gz: a2ca47df42c824b5dfb3747d0369bf8de58299838c6eaef15b6f0c24e8285368ce5029a56a1c60863f4c5b21ca7fafb7f6fe4235bf54d9ad58306f930621f266
+  data.tar.gz: aa7b5ce64c52aebf03cd1c095eea0a6e8d08d860206195a40e06afa3e1d529d645a7e29c37e2f94b056f654f4a215172f66b983218187dc38b310774385d64c0

data/lib/rbbt/util/log/progress/report.rb

@@ -20,7 +20,11 @@ module Log
     attr_accessor :history, :mean_max
     def thr
       count = @ticks - @last_count
-      seconds = Time.now - @last_time
+      if @last_time.nil?
+        seconds = 0.001
+      else
+        seconds = Time.now - @last_time
+      end
       thr = count / seconds
     end
 
@@ -99,7 +103,11 @@ module Log
 
     def done(io = STDERR)
       done_msg = Log.color(:magenta, desc) << " " << Log.color(:green, "done")
-      ellapsed = (Time.now - @start).to_i
+      if @start
+        ellapsed = (Time.now - @start).to_i
+      else
+        ellapsed = 0
+      end
       ellapsed = [ellapsed/3600, ellapsed/60 % 60, ellapsed % 60].map{|t| "%02i" % t }.join(':')
       done_msg << " " << Log.color(:blue, (@ticks).to_s) << " in " << Log.color(:green, ellapsed)
       @last_count = 0

data/lib/rbbt/workflow/accessor.rb

@@ -208,9 +208,11 @@ class Step
 
   def exception(ex, msg = nil)
     self._abort
+    ex_class = ex.class.to_s
     set_info :backtrace, ex.backtrace
+    set_info :exception, {:class => ex_class, :message => ex.message, :backtrace => ex.backtrace}
     if msg.nil?
-      log :error, "Exception -- #{ex.message}"
+      log :error, "#{ex_class} -- #{ex.message}"
     else
       log :error, "#{msg} -- #{ex.message}"
     end

data/lib/rbbt/workflow/step.rb

@@ -79,7 +79,11 @@ class Step
                 end
                 array
               when :tsv
-                TSV.open(value)
+                begin
+                  TSV.open(value)
+                rescue IOError
+                  TSV.setup({})
+                end
               else
                 value.read
               end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.13.12
+  version: 5.13.13
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-05-12 00:00:00.000000000 Z
+date: 2014-05-16 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake