rbbt-text 1.3.7 → 1.3.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/document/corpus/pubmed.rb +13 -5
- data/lib/rbbt/nlp/spaCy.rb +2 -2
- data/test/rbbt/document/corpus/test_pubmed.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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-
data.tar.gz:
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3
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metadata.gz: e1b07b2646ecdc51599e2a2356fd18708e88d819944910a07930f67ec3fc012d
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4
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data.tar.gz: 03bcbe61f41d830668b50fcfc253fa2b43285774040f61fb3fb0a58f80e9dfd3
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SHA512:
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-
metadata.gz:
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data.tar.gz:
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metadata.gz: ae6de2dd809642ca38276ff82e243efeb193cf432bc78aea92e772ab21ff489f23224b9e93de726dcacdb06910716f1107171433cc39e7b022ba14ee4ed284f6
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7
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data.tar.gz: 82768060a28248d459031030b6ba49b500b63a9d3ae2199ccdf1417fd3b1f66ce0d962db17875615ee36bb3b5879d8ccbbdec892942f544fa08481b4551a1003
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@@ -4,10 +4,11 @@ module Document::Corpus
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PUBMED_NAMESPACE="PMID"
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def add_pmid(pmid, type = nil, update = false)
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type = :abstract if type.nil?
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7
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-
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+
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if ! (update || Array === pmid)
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id = [PUBMED_NAMESPACE, pmid, type].collect{|e| e.to_s}*":"
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documents = self.documents(id)
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-
return documents if documents.any?
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+
return documents.first if documents.any?
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end
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pmids = Array === pmid ? pmid : [pmid]
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@@ -27,7 +28,14 @@ module Document::Corpus
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document
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end
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-
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if Array === pmid
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corpus = res.first.corpus if res.first
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Document.setup(res, :corpus => corpus)
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else
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res = res.first
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end
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+
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res
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end
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def add_pubmed_query(query, max = 3000, type = nil)
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@@ -35,8 +43,8 @@ module Document::Corpus
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add_pmid(pmids, type)
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end
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-
self.claim "PMID" do |id,
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+
self.claim "PMID" do |id,type,update|
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Log.debug "Claiming #{id}"
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-
self.add_pmid(id, type)
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+
self.add_pmid(id, type,update)
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end
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end
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data/lib/rbbt/nlp/spaCy.rb
CHANGED
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@@ -153,8 +153,8 @@ module SpaCy
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chunk_index = Segment.index(SpaCy.chunk_segments(text, lang))
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156
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source_id = chunk_index[source.offset].first || source.segid
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-
target_id = chunk_index[target.offset].first || target.segid
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source_id = chunk_index[source.offset.to_i].first || source.segid
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target_id = chunk_index[target.offset.to_i].first || target.segid
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path = Paths.dijkstra(graph, source_id, [target_id])
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@@ -7,7 +7,7 @@ class TestCorpusPubmed < Test::Unit::TestCase
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def test_add_pmid
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corpus = Document::Corpus.setup({})
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-
document = corpus.add_pmid("33359141", :abstract)
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document = corpus.add_pmid("33359141", :abstract, true)
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title = document.to(:title)
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assert title.include?("COVID-19")
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: rbbt-text
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version: !ruby/object:Gem::Version
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version: 1.3.
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version: 1.3.8
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2022-
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date: 2022-11-08 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rbbt-util
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