rbbt-text 1.1.1 → 1.1.2

checksums.yaml

@@ -1,15 +1,15 @@
 ---
 !binary "U0hBMQ==":
   metadata.gz: !binary |-
-    ZTQ4ZTQ3ZTFlZDhkOGFmZGQzMGZmZjdmZWIyYWExYzcxM2VjZDg4OA==
+    YmM3MTY4MmVhNDM3NmFlMTFhNTEwZGNkYWQyMGIzZjZhZWU0ZjA4YQ==
   data.tar.gz: !binary |-
-    MDMxYzI3NmQ2YmRhZDE5ZjIzYWRlZGI1M2U0NTc4YzYxMGU5ZDUxZA==
-!binary "U0hBNTEy":
+    YTVkYWFlMmQzOTA3M2M2YjZlZjIxNzNjOTE3MTA3NzNlZDc1OGY0Zg==
+SHA512:
   metadata.gz: !binary |-
-    OWYxOTI1YWQ2OWNmODJmMmRjZjMyOGJmZGQ5ZDljZjhiNTRiZDkxYjhlY2Fh
-    NWU3MzkyMWZiNDg0NjMwYmNjNzc0ZWNkMTQ3Njk2Njg4ODIyYzM3OTcxMjg5
-    NmFmYzBmMGI0OTA2OTBkMDJkNWY1OGYyMzMxNzEwZjFkYzRkMmE=
+    NWFhODc1YTMzOTA0MTIxNDU4NzJjZjJiOGFjMzcxNmY5OTcwMTE3ZWYzZjcw
+    ODVhNjM4ZWQ5ZjBkODQ2YjFmOGJmNDU2YmVmYzg0N2M5Yzk4N2YyNmNiMjQ0
+    YzEzMDAyZjg3YWMwOWVkODBmNDRmYTU2OTdhMTg5ODcwMDAyZjk=
   data.tar.gz: !binary |-
-    MzI5NDE5OTg1YTI5ODYwOGRhYzc0MGNiMjhjYzU5M2NiZDY4YTVhYWI2OGYy
-    ZDU4MTYyMDVkNDdmMmI1NDNkNWM0YTIwOTg0YTZhYzdhODIwZjlmMWNjZDgy
-    NzZiZjI0YzczYTc0ZGE5OTBjMDcxNTRjZjBiNzRiMWViZjFiMDQ=
+    MTQ1NjgzYjBkYjhiNzgyNjc0ZmU4MmQ2MzZiZDkyZjQyN2YyM2MzNDBiNDA4
+    ZjQ4M2ZmYzhlNTJmNjhmZGZjZTNkMGI2MmJiYzgyYjM4ZjIwOThlMmI4NWZh
+    ODE3YzZjYzU0ODhlZjFiMjc2ZmZhZjU5NDhlNDc1MTExM2RkZGM=

data/share/install/software/Linnaeus

@@ -7,14 +7,12 @@ species_url="http://sourceforge.net/projects/linnaeus/files/Entity_packs/species
 install_src "$name" "$url"
 ln -s "$OPT_DIR/$name/bin/"*.jar "$OPT_JAR_DIR/$name.jar" 
 
-echo "GET SPECIES"  > /tmp/foo
 get_src "Linnaeus-species-proxy" "$species_url"
 pkg_dir="`opt_dir \"$name\"`"
 build_dir=`build_dir`
-echo $pkg_dir  >> /tmp/foo
-echo $build_dir  >> /tmp/foo
 mv "$build_dir" "$pkg_dir"
-tmp_file="/tmp/species-proxy-properties.tmp"
+tmp_file="~/.rbbt/tmp/species-proxy-properties.tmp"
+mkdir -p $(basename "$tmp_file")
 cat  "$pkg_dir/species-proxy/properties.conf" |grep -v "^.dir =" >> $tmp_file
 echo "\$dir = $pkg_dir/species-proxy/" > "$pkg_dir/species-proxy/properties.conf"
 cat $tmp_file | grep -v "^#" >>  "$pkg_dir/species-proxy/properties.conf"

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-text
 version: !ruby/object:Gem::Version
-  version: 1.1.1
+  version: 1.1.2
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-11-04 00:00:00.000000000 Z
+date: 2013-11-19 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rbbt-util
@@ -88,6 +88,7 @@ executables:
 extensions: []
 extra_rdoc_files: []
 files:
+- bin/get_ppis.rb
 - lib/rbbt/bow/bow.rb
 - lib/rbbt/bow/dictionary.rb
 - lib/rbbt/bow/misc.rb
@@ -135,30 +136,29 @@ files:
 - share/rnorm/cue_default
 - share/rnorm/tokens_default
 - share/wordlists/stopwords
-- test/rbbt/bow/test_misc.rb
 - test/rbbt/bow/test_bow.rb
 - test/rbbt/bow/test_dictionary.rb
-- test/rbbt/ner/test_ngram_prefix_dictionary.rb
-- test/rbbt/ner/test_NER.rb
+- test/rbbt/bow/test_misc.rb
+- test/rbbt/entity/test_document.rb
 - test/rbbt/ner/segment/test_named_entity.rb
-- test/rbbt/ner/segment/test_transformed.rb
 - test/rbbt/ner/segment/test_segmented.rb
-- test/rbbt/ner/test_patterns.rb
-- test/rbbt/ner/test_segment.rb
-- test/rbbt/ner/test_finder.rb
+- test/rbbt/ner/segment/test_transformed.rb
+- test/rbbt/ner/test_NER.rb
+- test/rbbt/ner/test_abner.rb
+- test/rbbt/ner/test_banner.rb
 - test/rbbt/ner/test_chemical_tagger.rb
-- test/rbbt/ner/test_token_trieNER.rb
+- test/rbbt/ner/test_finder.rb
+- test/rbbt/ner/test_linnaeus.rb
+- test/rbbt/ner/test_ngram_prefix_dictionary.rb
 - test/rbbt/ner/test_oscar4.rb
-- test/rbbt/ner/test_abner.rb
+- test/rbbt/ner/test_patterns.rb
 - test/rbbt/ner/test_regexpNER.rb
 - test/rbbt/ner/test_rnorm.rb
-- test/rbbt/ner/test_banner.rb
-- test/rbbt/ner/test_linnaeus.rb
-- test/rbbt/nlp/test_nlp.rb
+- test/rbbt/ner/test_segment.rb
+- test/rbbt/ner/test_token_trieNER.rb
 - test/rbbt/nlp/open_nlp/test_sentence_splitter.rb
-- test/rbbt/entity/test_document.rb
+- test/rbbt/nlp/test_nlp.rb
 - test/test_helper.rb
-- bin/get_ppis.rb
 homepage: http://github.com/mikisvaz/rbbt-util
 licenses: []
 metadata: {}
@@ -178,7 +178,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.0.3
+rubygems_version: 2.2.0
 signing_key: 
 specification_version: 4
 summary: Text mining tools for the Ruby Bioinformatics Toolkit (rbbt)