rbbt-text 1.1.1 → 1.1.2

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Files changed (3) hide show
  1. checksums.yaml +9 -9
  2. data/share/install/software/Linnaeus +2 -4
  3. metadata +17 -17
checksums.yaml CHANGED
@@ -1,15 +1,15 @@
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  ---
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  !binary "U0hBMQ==":
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  metadata.gz: !binary |-
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- ZTQ4ZTQ3ZTFlZDhkOGFmZGQzMGZmZjdmZWIyYWExYzcxM2VjZDg4OA==
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+ YmM3MTY4MmVhNDM3NmFlMTFhNTEwZGNkYWQyMGIzZjZhZWU0ZjA4YQ==
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  data.tar.gz: !binary |-
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- MDMxYzI3NmQ2YmRhZDE5ZjIzYWRlZGI1M2U0NTc4YzYxMGU5ZDUxZA==
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- !binary "U0hBNTEy":
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+ YTVkYWFlMmQzOTA3M2M2YjZlZjIxNzNjOTE3MTA3NzNlZDc1OGY0Zg==
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+ SHA512:
8
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  metadata.gz: !binary |-
9
- OWYxOTI1YWQ2OWNmODJmMmRjZjMyOGJmZGQ5ZDljZjhiNTRiZDkxYjhlY2Fh
10
- NWU3MzkyMWZiNDg0NjMwYmNjNzc0ZWNkMTQ3Njk2Njg4ODIyYzM3OTcxMjg5
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- NmFmYzBmMGI0OTA2OTBkMDJkNWY1OGYyMzMxNzEwZjFkYzRkMmE=
9
+ NWFhODc1YTMzOTA0MTIxNDU4NzJjZjJiOGFjMzcxNmY5OTcwMTE3ZWYzZjcw
10
+ ODVhNjM4ZWQ5ZjBkODQ2YjFmOGJmNDU2YmVmYzg0N2M5Yzk4N2YyNmNiMjQ0
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+ YzEzMDAyZjg3YWMwOWVkODBmNDRmYTU2OTdhMTg5ODcwMDAyZjk=
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  data.tar.gz: !binary |-
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- MzI5NDE5OTg1YTI5ODYwOGRhYzc0MGNiMjhjYzU5M2NiZDY4YTVhYWI2OGYy
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- ZDU4MTYyMDVkNDdmMmI1NDNkNWM0YTIwOTg0YTZhYzdhODIwZjlmMWNjZDgy
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- NzZiZjI0YzczYTc0ZGE5OTBjMDcxNTRjZjBiNzRiMWViZjFiMDQ=
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+ MTQ1NjgzYjBkYjhiNzgyNjc0ZmU4MmQ2MzZiZDkyZjQyN2YyM2MzNDBiNDA4
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+ ZjQ4M2ZmYzhlNTJmNjhmZGZjZTNkMGI2MmJiYzgyYjM4ZjIwOThlMmI4NWZh
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+ ODE3YzZjYzU0ODhlZjFiMjc2ZmZhZjU5NDhlNDc1MTExM2RkZGM=
data/share/install/software/Linnaeus CHANGED
@@ -7,14 +7,12 @@ species_url="http://sourceforge.net/projects/linnaeus/files/Entity_packs/species
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  install_src "$name" "$url"
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  ln -s "$OPT_DIR/$name/bin/"*.jar "$OPT_JAR_DIR/$name.jar"
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- echo "GET SPECIES" > /tmp/foo
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  get_src "Linnaeus-species-proxy" "$species_url"
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  pkg_dir="`opt_dir \"$name\"`"
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  build_dir=`build_dir`
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- echo $pkg_dir >> /tmp/foo
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- echo $build_dir >> /tmp/foo
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  mv "$build_dir" "$pkg_dir"
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- tmp_file="/tmp/species-proxy-properties.tmp"
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+ tmp_file="~/.rbbt/tmp/species-proxy-properties.tmp"
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+ mkdir -p $(basename "$tmp_file")
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  cat "$pkg_dir/species-proxy/properties.conf" |grep -v "^.dir =" >> $tmp_file
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  echo "\$dir = $pkg_dir/species-proxy/" > "$pkg_dir/species-proxy/properties.conf"
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  cat $tmp_file | grep -v "^#" >> "$pkg_dir/species-proxy/properties.conf"
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: rbbt-text
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  version: !ruby/object:Gem::Version
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- version: 1.1.1
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+ version: 1.1.2
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  platform: ruby
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  authors:
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  - Miguel Vazquez
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2013-11-04 00:00:00.000000000 Z
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+ date: 2013-11-19 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: rbbt-util
@@ -88,6 +88,7 @@ executables:
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  extensions: []
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  extra_rdoc_files: []
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  files:
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+ - bin/get_ppis.rb
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  - lib/rbbt/bow/bow.rb
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  - lib/rbbt/bow/dictionary.rb
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  - lib/rbbt/bow/misc.rb
@@ -135,30 +136,29 @@ files:
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  - share/rnorm/cue_default
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  - share/rnorm/tokens_default
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  - share/wordlists/stopwords
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- - test/rbbt/bow/test_misc.rb
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  - test/rbbt/bow/test_bow.rb
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  - test/rbbt/bow/test_dictionary.rb
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- - test/rbbt/ner/test_ngram_prefix_dictionary.rb
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- - test/rbbt/ner/test_NER.rb
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+ - test/rbbt/bow/test_misc.rb
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+ - test/rbbt/entity/test_document.rb
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  - test/rbbt/ner/segment/test_named_entity.rb
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- - test/rbbt/ner/segment/test_transformed.rb
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  - test/rbbt/ner/segment/test_segmented.rb
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- - test/rbbt/ner/test_patterns.rb
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- - test/rbbt/ner/test_segment.rb
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- - test/rbbt/ner/test_finder.rb
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+ - test/rbbt/ner/segment/test_transformed.rb
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+ - test/rbbt/ner/test_NER.rb
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+ - test/rbbt/ner/test_abner.rb
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+ - test/rbbt/ner/test_banner.rb
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  - test/rbbt/ner/test_chemical_tagger.rb
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- - test/rbbt/ner/test_token_trieNER.rb
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+ - test/rbbt/ner/test_finder.rb
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+ - test/rbbt/ner/test_linnaeus.rb
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+ - test/rbbt/ner/test_ngram_prefix_dictionary.rb
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  - test/rbbt/ner/test_oscar4.rb
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- - test/rbbt/ner/test_abner.rb
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+ - test/rbbt/ner/test_patterns.rb
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  - test/rbbt/ner/test_regexpNER.rb
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  - test/rbbt/ner/test_rnorm.rb
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- - test/rbbt/ner/test_banner.rb
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- - test/rbbt/ner/test_linnaeus.rb
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- - test/rbbt/nlp/test_nlp.rb
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+ - test/rbbt/ner/test_segment.rb
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+ - test/rbbt/ner/test_token_trieNER.rb
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  - test/rbbt/nlp/open_nlp/test_sentence_splitter.rb
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- - test/rbbt/entity/test_document.rb
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+ - test/rbbt/nlp/test_nlp.rb
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  - test/test_helper.rb
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- - bin/get_ppis.rb
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  homepage: http://github.com/mikisvaz/rbbt-util
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  licenses: []
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  metadata: {}
@@ -178,7 +178,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  version: '0'
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  requirements: []
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  rubyforge_project:
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- rubygems_version: 2.0.3
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+ rubygems_version: 2.2.0
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  signing_key:
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  specification_version: 4
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  summary: Text mining tools for the Ruby Bioinformatics Toolkit (rbbt)