rbbt-study 0.2.21 → 0.2.22
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- checksums.yaml +8 -8
- data/lib/rbbt/entity/study/genotypes/knowledge_base.rb +16 -0
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,15 +1,15 @@
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---
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!binary "U0hBMQ==":
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metadata.gz: !binary |-
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4
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-
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4
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+
OTgwODBhYjg4OGY4MGFjOGY4NzE1MDE1MDYwN2UxNzgzMzVhOGJjNQ==
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5
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data.tar.gz: !binary |-
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6
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-
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6
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+
ZDFlNDA0YTkyYTM3ZjU4YjYzMWI5YjUxNjdmZWM1ZWQyOTg4OGIzOQ==
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7
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SHA512:
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metadata.gz: !binary |-
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-
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-
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11
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-
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9
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+
NTcwZjI1OWZjNGZmOTg0MzNiMDRmNjIyMDQzYWUyMzAxYTgxOGFkMDg0M2Ez
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10
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+
MzEyZTlmMjUyMDc2NzM2NTRkZTI2OGI4MmViNDRlYmNkMzcxYmM5ZGNlZmIy
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11
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+
NGRiODBiMzY4ZTAwNWZkN2VjYzBhOWU4OGI0NDI0NjA1ZThjZjg=
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data.tar.gz: !binary |-
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-
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-
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15
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-
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13
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+
Mjk0Njc5MTNlNTAyMjRmOWE4MzRhYzU5YjFlYTc5MzM0Y2ZiZjExZjEwYzJl
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14
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+
NTBlZTU4ZGU5OTAxZmQwZmFiYTcyM2E2YWIzNzljYTQ5MGFmM2M4MDE5NjA5
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15
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+
YWE4NmQ0YzU2NWJiMzZmY2Y5NDY0NTM2ZmY0MmVjYTJiZTBlNzE=
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@@ -13,6 +13,22 @@ module Study
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tsv
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}
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16
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self.study_registry[:mutation_affected_genes] = Proc.new{|study,database|
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tsv = TSV.setup({}, :key_field => "Genomic Mutation", :fields => ["Ensembl Gene ID"], :type => :flat, :namespace => study.organism)
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study.cohort.metagenotype.uniq.each do |mutation|
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tsv[mutation] = mutation.affected_genes
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end
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tsv
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}
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+
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self.study_registry[:mutation_damaged_genes] = Proc.new{|study,database|
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tsv = TSV.setup({}, :key_field => "Genomic Mutation", :fields => ["Ensembl Gene ID"], :type => :flat, :namespace => study.organism)
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study.cohort.metagenotype.uniq.each do |mutation|
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tsv[mutation] = mutation.damaged_genes
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end
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tsv
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}
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+
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16
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self.study_registry[:sample_mutations] = Proc.new{|study,database|
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tsv = TSV.setup({}, :key_field => "Sample", :fields => ["Genomic Mutation"], :type => :flat, :namespace => study.organism)
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: rbbt-study
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version: !ruby/object:Gem::Version
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-
version: 0.2.
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version: 0.2.22
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2013-12-
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date: 2013-12-17 00:00:00.000000000 Z
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dependencies: []
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description: This gem add the study entity with suport for NGS, Microarray and other
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types of data
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