rbbt-study 0.2.20 → 0.2.21
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checksums.yaml
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@@ -1,15 +1,15 @@
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!binary "U0hBMQ==":
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@@ -15,9 +15,11 @@ module Study
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self.study_registry[:sample_mutations] = Proc.new{|study,database|
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tsv = TSV.setup({}, :key_field => "Sample", :fields => ["Genomic Mutation"], :type => :flat, :namespace => study.organism)
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study.samples.select_by(:has_genotype?).each do |sample|
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tsv[sample] = sample.mutations
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end
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tsv
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}
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@@ -28,7 +28,7 @@ module StudyWorkflow
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genes.each do |gene|
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mutations = study.knowledge_base.parents(:mutation_genes, gene).target
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mutations = study.knowledge_base.subset(:sample_mutations, "Genomic Mutation" => mutations).source
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mutations = study.knowledge_base.subset(:sample_mutations, "Genomic Mutation" => mutations, "Sample" => :all).source
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next if mutations.empty?
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matches = mutations.length
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exon_bases = gene2exon_size[gene]
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