rbbt-sources 3.2.14 → 3.2.15

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 476a20bf7be9718acce0355dccc7f88105e168247348de1895491bbf7189b7d2
-  data.tar.gz: a434af060363f85fe565f9f394aa0a64acae7bf58bf98859159536c59be51a11
+  metadata.gz: df44bcf0d03a785f8aa9b36b123491ed49187f710e70a346b645f257701a0ac2
+  data.tar.gz: feef523710ea56093cdf4ff2df36d28f57a426a906e13ce3edbe6f71f7272452
 SHA512:
-  metadata.gz: e9f09c7a4514edaf3aabd89a5980d6be18d4761d72676da8be74625617f330b36816f66054fc6af5913ed9d94f6427391dec951307be23a2846225e1c840a813
-  data.tar.gz: 4b07413c9c8e8c6dd64180a1cdbb86407f81b86db8b14c63ff330a17d766b5604014f34dd3346bc6062029dd3c1dd4c1a2bdcaabb3b8cfa96434ba0170da32d6
+  metadata.gz: 3766aa7ce01f4ad44b7f759faa7b2790d4cdd3808a546978a06312f95662aa1ba6dc8d916c8b29d3d8f10699adc21cb80e55a496a2d8c9ec5a39191cdcd415d0
+  data.tar.gz: 4882abf0ac721753c7f31e2f85d66e3f537c6b28b4cb62337b76031d1109a89c1cfb7c6409c535a3f49990c6ce4b32a76c476da6c7736361480ea423d0b0a1c9

data/lib/rbbt/sources/organism.rb

@@ -73,6 +73,7 @@ module Organism
     url = "http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver"
     CMD.cmd_log("wget '#{url}' -O '#{file}'")
     CMD.cmd("chmod 0755 '#{file}'")
+    Rbbt.set_software_env
     nil
   end
 

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-sources
 version: !ruby/object:Gem::Version
-  version: 3.2.14
+  version: 3.2.15
 platform: ruby
 authors:
 - Miguel Vazquez
@@ -178,24 +178,24 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.3.26
+rubygems_version: 3.4.8
 signing_key: 
 specification_version: 4
 summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)
 test_files:
-- test/rbbt/sources/test_HPRD.rb
-- test/rbbt/sources/test_biomart.rb
-- test/rbbt/sources/test_entrez.rb
 - test/rbbt/sources/test_go.rb
-- test/rbbt/sources/test_gscholar.rb
-- test/rbbt/sources/test_kegg.rb
-- test/rbbt/sources/test_matador.rb
-- test/rbbt/sources/test_organism.rb
-- test/rbbt/sources/test_pharmagkb.rb
-- test/rbbt/sources/test_pina.rb
 - test/rbbt/sources/test_pubmed.rb
+- test/rbbt/sources/test_pina.rb
+- test/rbbt/sources/test_pharmagkb.rb
+- test/rbbt/sources/test_organism.rb
+- test/rbbt/sources/test_synapse.rb
+- test/rbbt/sources/test_entrez.rb
 - test/rbbt/sources/test_stitch.rb
+- test/rbbt/sources/test_biomart.rb
+- test/rbbt/sources/test_HPRD.rb
 - test/rbbt/sources/test_string.rb
-- test/rbbt/sources/test_synapse.rb
+- test/rbbt/sources/test_kegg.rb
 - test/rbbt/sources/test_tfacts.rb
+- test/rbbt/sources/test_matador.rb
+- test/rbbt/sources/test_gscholar.rb
 - test/test_helper.rb