rbbt-sources 3.2.14 → 3.2.15

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Files changed (3) hide show
  1. checksums.yaml +4 -4
  2. data/lib/rbbt/sources/organism.rb +1 -0
  3. metadata +12 -12
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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- metadata.gz: 476a20bf7be9718acce0355dccc7f88105e168247348de1895491bbf7189b7d2
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- data.tar.gz: a434af060363f85fe565f9f394aa0a64acae7bf58bf98859159536c59be51a11
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+ metadata.gz: df44bcf0d03a785f8aa9b36b123491ed49187f710e70a346b645f257701a0ac2
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  SHA512:
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- metadata.gz: e9f09c7a4514edaf3aabd89a5980d6be18d4761d72676da8be74625617f330b36816f66054fc6af5913ed9d94f6427391dec951307be23a2846225e1c840a813
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- data.tar.gz: 4b07413c9c8e8c6dd64180a1cdbb86407f81b86db8b14c63ff330a17d766b5604014f34dd3346bc6062029dd3c1dd4c1a2bdcaabb3b8cfa96434ba0170da32d6
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+ metadata.gz: 3766aa7ce01f4ad44b7f759faa7b2790d4cdd3808a546978a06312f95662aa1ba6dc8d916c8b29d3d8f10699adc21cb80e55a496a2d8c9ec5a39191cdcd415d0
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+ data.tar.gz: 4882abf0ac721753c7f31e2f85d66e3f537c6b28b4cb62337b76031d1109a89c1cfb7c6409c535a3f49990c6ce4b32a76c476da6c7736361480ea423d0b0a1c9
data/lib/rbbt/sources/organism.rb CHANGED
@@ -73,6 +73,7 @@ module Organism
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  url = "http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver"
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  CMD.cmd_log("wget '#{url}' -O '#{file}'")
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  CMD.cmd("chmod 0755 '#{file}'")
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+ Rbbt.set_software_env
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  nil
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  end
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metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: rbbt-sources
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  version: !ruby/object:Gem::Version
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- version: 3.2.14
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+ version: 3.2.15
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  platform: ruby
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  authors:
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  - Miguel Vazquez
@@ -178,24 +178,24 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  - !ruby/object:Gem::Version
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  version: '0'
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  requirements: []
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- rubygems_version: 3.3.26
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+ rubygems_version: 3.4.8
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  signing_key:
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  specification_version: 4
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  summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)
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  test_files:
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- - test/rbbt/sources/test_HPRD.rb
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- - test/rbbt/sources/test_biomart.rb
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- - test/rbbt/sources/test_entrez.rb
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  - test/rbbt/sources/test_go.rb
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- - test/rbbt/sources/test_gscholar.rb
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- - test/rbbt/sources/test_kegg.rb
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- - test/rbbt/sources/test_matador.rb
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- - test/rbbt/sources/test_organism.rb
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- - test/rbbt/sources/test_pharmagkb.rb
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- - test/rbbt/sources/test_pina.rb
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  - test/rbbt/sources/test_pubmed.rb
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+ - test/rbbt/sources/test_pina.rb
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+ - test/rbbt/sources/test_pharmagkb.rb
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+ - test/rbbt/sources/test_organism.rb
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+ - test/rbbt/sources/test_synapse.rb
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+ - test/rbbt/sources/test_entrez.rb
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  - test/rbbt/sources/test_stitch.rb
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+ - test/rbbt/sources/test_biomart.rb
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+ - test/rbbt/sources/test_HPRD.rb
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  - test/rbbt/sources/test_string.rb
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- - test/rbbt/sources/test_synapse.rb
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+ - test/rbbt/sources/test_kegg.rb
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  - test/rbbt/sources/test_tfacts.rb
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+ - test/rbbt/sources/test_matador.rb
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+ - test/rbbt/sources/test_gscholar.rb
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  - test/test_helper.rb