rbbt-sources 3.1.37 → 3.1.38
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- checksums.yaml +4 -4
- data/lib/rbbt/sources/organism.rb +13 -0
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
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2
2
|
SHA256:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: f0b45df8e4ef43f18147f001595817df05dddc6ef3b43dcea3b7c17a1d379163
|
4
|
+
data.tar.gz: 3b1ac66222ca9dd9d0342f97917cc3d969fc566b2c068a319101ec6fe7133f58
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: b75e51b2338a0b3c55545ba788db502156126327ed920f86e448fbe239c2bb2f5a053b1009dd8e42bd7e6f425614e504c83a8ea894b070a07e9275fb1e5ea399
|
7
|
+
data.tar.gz: 35b7852629a3dc69df65d8e3c226c4995051a2dd7e0a4435f485c947014e88ee9a97455f7270de902d0058db0a4d55315731e29ce2195cb0b79ceef390d92676
|
@@ -91,6 +91,19 @@ module Organism
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|
91
91
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end
|
92
92
|
end
|
93
93
|
|
94
|
+
def self.organism_for_build(build)
|
95
|
+
case build.to_s
|
96
|
+
when 'hg18'
|
97
|
+
"Hsa/may2008"
|
98
|
+
when 'hg19', 'b37'
|
99
|
+
"Hsa/feb2014"
|
100
|
+
when 'hg38'
|
101
|
+
"Hsa/may2017"
|
102
|
+
else
|
103
|
+
raise RbbtException, "Unknown organism build #{build}"
|
104
|
+
end
|
105
|
+
end
|
106
|
+
|
94
107
|
def self.liftOver(positions, source, target)
|
95
108
|
|
96
109
|
source_hg = hg_build(source)
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: rbbt-sources
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 3.1.
|
4
|
+
version: 3.1.38
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Miguel Vazquez
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2019-05-
|
11
|
+
date: 2019-05-22 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: rbbt-util
|