rbbt-sources 3.1.36 → 3.1.37

checksums.yaml

@@ -1,7 +1,7 @@
 ---
-SHA1:
-  metadata.gz: '04958a2fe4b32e75a513a2e74d97397d55a4c13f'
-  data.tar.gz: 746c8317ab47bc9537732ea79d539243216dafaa
+SHA256:
+  metadata.gz: 946161a948c6af574ca99a7ec515d178cdcd0c2041adab0b0aa960ccf9a50f42
+  data.tar.gz: 75b039de2f1f30f5e372747725b3239bd8894ee22733fae5df99d126ec806b4b
 SHA512:
-  metadata.gz: 809fb8d4cfbbcb439ea5754a491c9ec5b135ac039e384c95df8c63fc582efe7cdb8fdf4dac087507932ccd4133f273236c3ae22d17cf260ec46c88e4405bea07
-  data.tar.gz: fa7ee7e513a7543a66c88c30360431defecefb8f8031a864291dc2ff98d049686d15128898aabbb84370e8e5a7ad1670e5d690000cbab882ada0090a20e2a90b
+  metadata.gz: 4628f939d7ea4c7f20266a27d0b5750c1b2c5eeb13d49198d5e802b43a6293ff8b858483baeeb343f2022a8b4701a77bf32c6b9b1c84e5d60fa84a9b2a252120
+  data.tar.gz: 8eec95c8f0bc9304da7a61856e7cdb8d92f9c7fb8eaad31e8d14054f656da3c86cd54602f77cc57edf0ae128796166ff07f9459eb280bf6d2fc9c9b84b6cc435

data/lib/rbbt/sources/organism.rb

@@ -66,6 +66,8 @@ module Organism
 
   def self.hg_build(organism)
     require 'rbbt/sources/ensembl_ftp'
+    return organism if organism =~ /^hg\d\d$/
+
     return 'hg19' unless organism =~ /\//
 
     species, date = organism.split("/")

data/share/install/Organism/organism_helpers.rb

@@ -806,7 +806,7 @@ file 'cdna_fasta' do |t|
   release = Ensembl.org2release(organism)
   num = release.split("-").last
   build_code = num.to_i > 75 ? "GRCh38" : "GRCh37" 
-  url = "ftp://ftp.ensembl.org/pub/release-#{num}/fasta/homo_sapiens/cdna/Homo_sapiens.#{build_code}.cdna.all.fa.gz"
+  url = "ftp://ftp.ensembl.org/pub/release-#{num}/fasta/homo_sapiens/cdna/Homo_sapiens.#{build_code}.#{num}.cdna.all.fa.gz"
   CMD.cmd("wget '#{url}' -O #{t.name}.gz")
   nil
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-sources
 version: !ruby/object:Gem::Version
-  version: 3.1.36
+  version: 3.1.37
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2019-04-08 00:00:00.000000000 Z
+date: 2019-05-20 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rbbt-util
@@ -189,8 +189,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubyforge_project: 
-rubygems_version: 2.6.13
+rubygems_version: 3.0.3
 signing_key: 
 specification_version: 4
 summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)