rbbt-sources 3.1.35 → 3.1.36
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/share/install/Organism/organism_helpers.rb +13 -0
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: '04958a2fe4b32e75a513a2e74d97397d55a4c13f'
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4
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data.tar.gz: 746c8317ab47bc9537732ea79d539243216dafaa
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 809fb8d4cfbbcb439ea5754a491c9ec5b135ac039e384c95df8c63fc582efe7cdb8fdf4dac087507932ccd4133f273236c3ae22d17cf260ec46c88e4405bea07
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7
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data.tar.gz: fa7ee7e513a7543a66c88c30360431defecefb8f8031a864291dc2ff98d049686d15128898aabbb84370e8e5a7ad1670e5d690000cbab882ada0090a20e2a90b
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@@ -797,3 +797,16 @@ file 'gene_set' do |t|
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797
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CMD.cmd("wget '#{url}' -O #{t.name}.gz")
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798
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nil
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799
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end
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800
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+
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801
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file 'cdna_fasta' do |t|
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802
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path = File.expand_path(t.name)
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803
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dirname = File.dirname(path)
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804
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organism = File.basename(dirname)
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805
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+
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806
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release = Ensembl.org2release(organism)
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807
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num = release.split("-").last
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808
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build_code = num.to_i > 75 ? "GRCh38" : "GRCh37"
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809
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url = "ftp://ftp.ensembl.org/pub/release-#{num}/fasta/homo_sapiens/cdna/Homo_sapiens.#{build_code}.cdna.all.fa.gz"
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810
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CMD.cmd("wget '#{url}' -O #{t.name}.gz")
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811
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nil
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812
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: rbbt-sources
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version: !ruby/object:Gem::Version
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4
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-
version: 3.1.
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4
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+
version: 3.1.36
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5
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platform: ruby
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authors:
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7
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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11
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-
date: 2019-
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11
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+
date: 2019-04-08 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rbbt-util
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