rbbt-sources 3.1.11 → 3.1.14
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/sources/MCLP.rb +25 -0
- metadata +12 -11
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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4
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data.tar.gz:
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3
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metadata.gz: cc90d49b8322a4c9257bb4bf83610511b30a3a73
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4
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data.tar.gz: 53ea5b6bfbb4ae19ddd3b4323225c554bc624c9b
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 03a06569443e9e0b196fd1917c282bfb48f879fca7ecfb93c5139893540a8bfa6f661f742a840dec4b97e4891ee2566f855b3c85148e87e8468b0162f64757b3
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7
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data.tar.gz: aafbcc3a8a02b2e1c32912a4fab1ffc6e897e74acdf01ca3252057a28c83798ba8e92c6348f9458d248a9adfedb2b0aa44c2910e0ea2b467b3b42f099208b10b
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@@ -0,0 +1,25 @@
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require 'rbbt-util'
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require 'rbbt/resource'
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require 'rbbt/sources/organism'
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4
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module MCLP
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extend Resource
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7
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self.subdir = 'share/databases/MCLP'
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def self.organism(org="Hsa")
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Organism.default_code(org)
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end
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#self.search_paths = {}
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#self.search_paths[:default] = :lib
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MCLP.claim MCLP.RPPA, :proc do
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url = "http://tcpaportal.org/mclp/download/MCLP-v1.1-Level4.zip"
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tsv = TSV.open(url, :header_hash => "", :fix => Proc.new{|l| l.gsub("NA", "")}, :cast => :to_f, :namespace => MCLP.organism, :type => :list)
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tsv.transpose("Antibody").to_s
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end
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end
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iif MCLP.RPPA.produce(true).find if __FILE__ == $0
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25
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: rbbt-sources
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version: !ruby/object:Gem::Version
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-
version: 3.1.
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version: 3.1.14
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2017-
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date: 2017-03-06 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rbbt-util
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@@ -92,6 +92,7 @@ files:
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- lib/rbbt/sources/COSTART.rb
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- lib/rbbt/sources/CTCAE.rb
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- lib/rbbt/sources/HPRD.rb
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- lib/rbbt/sources/MCLP.rb
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- lib/rbbt/sources/MSigDB.rb
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- lib/rbbt/sources/NCI.rb
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- lib/rbbt/sources/PSI_MI.rb
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@@ -180,19 +181,19 @@ signing_key:
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specification_version: 4
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summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)
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test_files:
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- test/test_helper.rb
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- test/rbbt/sources/test_pubmed.rb
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- test/rbbt/sources/
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- test/rbbt/sources/test_biomart.rb
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- test/rbbt/sources/test_string.rb
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- test/rbbt/sources/test_gscholar.rb
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- test/rbbt/sources/
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- test/rbbt/sources/test_biomart.rb
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- test/rbbt/sources/test_go.rb
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- test/rbbt/sources/test_pina.rb
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- test/rbbt/sources/test_entrez.rb
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- test/rbbt/sources/test_pharmagkb.rb
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- test/rbbt/sources/test_organism.rb
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- test/rbbt/sources/test_matador.rb
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- test/rbbt/sources/
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- test/rbbt/sources/test_tfacts.rb
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- test/rbbt/sources/test_kegg.rb
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- test/rbbt/sources/test_synapse.rb
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- test/rbbt/sources/test_go.rb
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- test/rbbt/sources/test_stitch.rb
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- test/rbbt/sources/
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- test/rbbt/sources/test_string.rb
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- test/rbbt/sources/test_tfacts.rb
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- test/test_helper.rb
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- test/rbbt/sources/test_HPRD.rb
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