rbbt-sources 3.1.11 → 3.1.14

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 9883483307ee8d88dcc1b7a8ce6e82e2a1521f7e
-  data.tar.gz: ce5f86b1db3b370ccb53539641de478fb5aef1e3
+  metadata.gz: cc90d49b8322a4c9257bb4bf83610511b30a3a73
+  data.tar.gz: 53ea5b6bfbb4ae19ddd3b4323225c554bc624c9b
 SHA512:
-  metadata.gz: 312842cd07dc73920d0e346d43d4c228c0d48c4d441b421fb5b27e975d7a42fe72af1ccfa864695e86d4b63c1621f4b3731f39ae7f17e105b3ea544eb198fd27
-  data.tar.gz: d0c9288317e0cdf83a2862c79e0c8713bf521c1c1e0596d7e6c91ba01a38cdc6b2d953f9ff8b8674fd63a34807876e390927fc525e1102cbe57e87d80486f076
+  metadata.gz: 03a06569443e9e0b196fd1917c282bfb48f879fca7ecfb93c5139893540a8bfa6f661f742a840dec4b97e4891ee2566f855b3c85148e87e8468b0162f64757b3
+  data.tar.gz: aafbcc3a8a02b2e1c32912a4fab1ffc6e897e74acdf01ca3252057a28c83798ba8e92c6348f9458d248a9adfedb2b0aa44c2910e0ea2b467b3b42f099208b10b

data/lib/rbbt/sources/MCLP.rb

@@ -0,0 +1,25 @@
+require 'rbbt-util'
+require 'rbbt/resource'
+require 'rbbt/sources/organism'
+
+module MCLP
+  extend Resource
+  self.subdir = 'share/databases/MCLP'
+
+  def self.organism(org="Hsa")
+    Organism.default_code(org)
+  end
+
+  #self.search_paths = {}
+  #self.search_paths[:default] = :lib
+
+
+  MCLP.claim MCLP.RPPA, :proc do 
+    url = "http://tcpaportal.org/mclp/download/MCLP-v1.1-Level4.zip"
+    tsv = TSV.open(url, :header_hash => "", :fix => Proc.new{|l| l.gsub("NA", "")}, :cast => :to_f, :namespace => MCLP.organism, :type => :list)
+    tsv.transpose("Antibody").to_s
+  end
+end
+
+iif MCLP.RPPA.produce(true).find if __FILE__ == $0
+

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-sources
 version: !ruby/object:Gem::Version
-  version: 3.1.11
+  version: 3.1.14
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2017-02-21 00:00:00.000000000 Z
+date: 2017-03-06 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rbbt-util
@@ -92,6 +92,7 @@ files:
 - lib/rbbt/sources/COSTART.rb
 - lib/rbbt/sources/CTCAE.rb
 - lib/rbbt/sources/HPRD.rb
+- lib/rbbt/sources/MCLP.rb
 - lib/rbbt/sources/MSigDB.rb
 - lib/rbbt/sources/NCI.rb
 - lib/rbbt/sources/PSI_MI.rb
@@ -180,19 +181,19 @@ signing_key:
 specification_version: 4
 summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)
 test_files:
+- test/test_helper.rb
 - test/rbbt/sources/test_pubmed.rb
-- test/rbbt/sources/test_pharmagkb.rb
-- test/rbbt/sources/test_biomart.rb
+- test/rbbt/sources/test_string.rb
 - test/rbbt/sources/test_gscholar.rb
-- test/rbbt/sources/test_kegg.rb
+- test/rbbt/sources/test_biomart.rb
+- test/rbbt/sources/test_go.rb
 - test/rbbt/sources/test_pina.rb
 - test/rbbt/sources/test_entrez.rb
+- test/rbbt/sources/test_pharmagkb.rb
+- test/rbbt/sources/test_organism.rb
 - test/rbbt/sources/test_matador.rb
-- test/rbbt/sources/test_HPRD.rb
+- test/rbbt/sources/test_tfacts.rb
+- test/rbbt/sources/test_kegg.rb
 - test/rbbt/sources/test_synapse.rb
-- test/rbbt/sources/test_go.rb
 - test/rbbt/sources/test_stitch.rb
-- test/rbbt/sources/test_organism.rb
-- test/rbbt/sources/test_string.rb
-- test/rbbt/sources/test_tfacts.rb
-- test/test_helper.rb
+- test/rbbt/sources/test_HPRD.rb