rbbt-sources 3.0.2 → 3.0.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/sources/biomart.rb +1 -1
- data/lib/rbbt/sources/kegg.rb +2 -2
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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4
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data.tar.gz:
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3
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metadata.gz: a5f75097d1a73830c5ae3c2749b114d50367862e
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4
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data.tar.gz: 837d1281d60d46d97690eaefb36dcfa1e5636636
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SHA512:
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-
metadata.gz:
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data.tar.gz:
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metadata.gz: 38695de62c02838192de10b51b2be02ab6800aa2a62aa96843049325fe6360140433f348d974f18059967f45b76edc621079f9a59d0d521dca491a5ac8182689
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7
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data.tar.gz: 7223c40d440690cb5ccab506a580593d3adec269060b3006caf8b2985d68b2b564ac0a6eaf3d5f476cb2e6ae483c940525f20fc2df8be28dae03283cb64fe7f1
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data/lib/rbbt/sources/biomart.rb
CHANGED
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@@ -167,7 +167,7 @@ module BioMart
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data = get(database, main, [], filters, data, open_options)
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end
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-
open_options[:filename]
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open_options[:filename] = "BioMart[#{main}+#{attrs.length}]"
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if filename.nil?
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results = TSV.open data, open_options
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results.key_field = main
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data/lib/rbbt/sources/kegg.rb
CHANGED
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@@ -110,11 +110,11 @@ if defined? Entity
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self
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when format == "KEGG Gene ID"
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ensembl = from_kegg.clean_annotations
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Gene.setup(Translation.job(:tsv_translate, "", :organism => organism, :genes => ensembl, :format => new_format).
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Gene.setup(Translation.job(:tsv_translate, "", :organism => organism, :genes => ensembl, :format => new_format).run.chunked_values_at(ensembl), new_format, organism).tap{|o| o.extend AnnotatedArray if AnnotatedArray === self }
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when new_format == "KEGG Gene ID"
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to_kegg
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else
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Gene.setup(Translation.job(:tsv_translate, "", :organism => organism, :genes => self, :format => new_format).
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Gene.setup(Translation.job(:tsv_translate, "", :organism => organism, :genes => self, :format => new_format).run.chunked_values_at(self), new_format, organism).tap{|o| o.extend AnnotatedArray if AnnotatedArray === self }
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end
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: rbbt-sources
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version: !ruby/object:Gem::Version
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4
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-
version: 3.0.
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version: 3.0.3
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2014-
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date: 2014-04-14 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rbbt-util
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