rbbt-sources 3.0.27 → 3.0.28
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- checksums.yaml +4 -4
- data/lib/rbbt/sources/corum.rb +11 -2
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: e3cf2501804b4adc98c032aa1ec5c9f986f02ebd
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4
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+
data.tar.gz: 1eafc609c0502d47523ad9dcce3918bff8b9293b
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 27b95bb20d33189ee98dc7bee656f111e9dcc6e394c4c90d6b76e5eb44a9b74f89f7b703270e20dafe70793054d75a7c9f0d7043a333913554735a5254b2bc6e
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7
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+
data.tar.gz: 8056fca7a38b1e3135871f0bd8b99038c7b45f9f087c4ba7431ed82fa7703458d0f08c484d96ddc22d6671e2c221c46d6f30eb6251a1e10d76b7ee6716111388
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data/lib/rbbt/sources/corum.rb
CHANGED
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@@ -22,7 +22,16 @@ module CORUM
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22
22
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url = "http://mips.helmholtz-muenchen.de/genre/proj/corum/allComplexes.csv"
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23
23
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tsv = TSV.open(url, :header_hash => "", :sep => ';', :sep2 => ',', :fix => Proc.new{|l| "CORUM:" + l.gsub('"','')})
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24
24
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tsv.namespace = organism
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25
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-
tsv.fields = tsv.fields.collect{|f| f.gsub('"','')}
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25
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+
tsv.fields = tsv.fields.collect{|f| f.gsub('"','')}.collect{|f|
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26
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+
case f
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27
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when "subunits (UniProt IDs)"
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28
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"UniProt/SwissProt Accession"
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29
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when "subunits (Entrez IDs)"
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30
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"Entrez Gene ID"
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31
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else
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32
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f
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33
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end
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34
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}
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26
35
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tsv.key_field = "CORUM Complex ID"
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27
36
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tsv.identifiers = CORUM.complex_names.produce.find
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28
37
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tsv
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@@ -39,7 +48,7 @@ if defined? Entity
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39
48
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self.add_identifiers CORUM.complex_names, "CORUM Complex ID", "Complex name"
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40
49
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41
50
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property :genes => :array2single do
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42
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-
@genes ||= CORUM.complexes.tsv(:persist => true, :fields => ["
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51
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+
@genes ||= CORUM.complexes.tsv(:persist => true, :fields => ["UniProt/SwissProt Accession"], :type => :flat).values_at *self
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43
52
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end
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44
53
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end
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45
54
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end
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