rbbt-sources 3.0.23 → 3.0.24

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Files changed (7) hide show
  1. checksums.yaml +4 -4
  2. data/etc/allowed_biomart_archives +1 -0
  3. data/etc/biomart/missing_in_archive +2 -0
  4. data/lib/rbbt/sources/cath.rb +1 -1
  5. data/lib/rbbt/sources/pina.rb +1 -1
  6. data/share/Ensembl/release_dates +4 -0
  7. metadata +3 -3
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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  ---
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  SHA1:
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- metadata.gz: f378051f6e4cf0a83de22c0211f3db2447202d39
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- data.tar.gz: eb9ae98e8f5415d5f611ad62a47ccb3da692f322
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+ metadata.gz: 907dd95d8535034e80e84c5df8194531bd86d1e3
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+ data.tar.gz: 4a67f08de4f4b83da9967d009fd32f29d1f17958
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  SHA512:
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- metadata.gz: 03c04ed1804e4cf19c3397fd5362b3f495d6e66af8b60bb3619a59b2cd36d5a207c4f4ef3c01ba3dee11d886d8aa096bb8e7e8abaf20ec18df2d3ed123f146d0
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- data.tar.gz: f931f2764266e4e0aa4f26c8ef4147c41f668adf84e7b1959c6f4095953d3e90e7f97ab23569406232a57255171c4f8560870d687e88c362e1762b6fc31a84b1
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+ metadata.gz: ca004897b4c92532dc14f4e2bafce4b90919c54598b27d428208b4d5115f4333cafc471596852e0de5cabb6d5ce226f34dbc61d779d38a5d06410a9dc9f346a9
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+ data.tar.gz: 253068f65d0e9cd3733be2d2cac1865321d6ef6cd5272bf71a7ff5b11a4b740a91ed365ab11ceaf50d165489907b1d71aeecd8c06184b49241a828e635e975d0
data/etc/allowed_biomart_archives CHANGED
@@ -2,3 +2,4 @@ may2009
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  jan2013
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  feb2014
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  dec2013
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+ dec2014
data/etc/biomart/missing_in_archive CHANGED
@@ -33,3 +33,5 @@ aug2007:
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  - hgnc
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  - hgnc_id
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  - illumina_humanwg_6_v3
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+ dec2014:
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+ - external_gene_id
data/lib/rbbt/sources/cath.rb CHANGED
@@ -59,7 +59,7 @@ module Cath
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  end
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  Rbbt.claim Rbbt.share.databases.CATH.CathDomainList, :proc do
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- domains = TSV.setup({}, :key_field => "Cath Domain", :type => :double, :fields => ["CATH domain name (seven characters)",
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+ domains = TSV.setup({}, :key_field => "Cath Domain", :fields => ["CATH domain name (seven characters)",
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  "Class number", "Architecture number", "Topology number", "Homologous superfamily number", "S35 sequence cluster number",
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  "S60 sequence cluster number", "S95 sequence cluster number", "S100 sequence cluster number", "S100 sequence count number",
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  "Domain length", "Structure resolution (Angstroms)"], :type => :list)
data/lib/rbbt/sources/pina.rb CHANGED
@@ -9,7 +9,7 @@ module Pina
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  url = "http://cbg.garvan.unsw.edu.au/pina/download/Homo%20sapiens-20121210.txt"
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- dumper = TSV::Dumper.new :type => :list, :type => :double,
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+ dumper = TSV::Dumper.new :type => :double,
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  :key_field => 'UniProt/SwissProt Accession', :namespace => Organism.default_code("Hsa"),
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  :fields => ['Interactor UniProt/SwissProt Accession', 'Method', 'Publication']
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data/share/Ensembl/release_dates CHANGED
@@ -1,5 +1,9 @@
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  #: :type=:single
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  #Release build
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+ release-79 mar2015
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+ release-78 dec2014
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+ release-77 oct2014
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+ release-76 aug2014
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  release-75 feb2014
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  release-74 dec2013
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  release-73 sep2013
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: rbbt-sources
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  version: !ruby/object:Gem::Version
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- version: 3.0.23
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+ version: 3.0.24
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  platform: ruby
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  authors:
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  - Miguel Vazquez
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2015-03-27 00:00:00.000000000 Z
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+ date: 2015-05-13 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: rbbt-util
@@ -170,7 +170,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  version: '0'
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  requirements: []
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  rubyforge_project:
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- rubygems_version: 2.2.2
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+ rubygems_version: 2.4.6
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  signing_key:
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  specification_version: 4
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  summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)