rbbt-sources 3.0.23 → 3.0.24
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/etc/allowed_biomart_archives +1 -0
- data/etc/biomart/missing_in_archive +2 -0
- data/lib/rbbt/sources/cath.rb +1 -1
- data/lib/rbbt/sources/pina.rb +1 -1
- data/share/Ensembl/release_dates +4 -0
- metadata +3 -3
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 907dd95d8535034e80e84c5df8194531bd86d1e3
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4
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data.tar.gz: 4a67f08de4f4b83da9967d009fd32f29d1f17958
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: ca004897b4c92532dc14f4e2bafce4b90919c54598b27d428208b4d5115f4333cafc471596852e0de5cabb6d5ce226f34dbc61d779d38a5d06410a9dc9f346a9
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7
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data.tar.gz: 253068f65d0e9cd3733be2d2cac1865321d6ef6cd5272bf71a7ff5b11a4b740a91ed365ab11ceaf50d165489907b1d71aeecd8c06184b49241a828e635e975d0
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data/lib/rbbt/sources/cath.rb
CHANGED
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@@ -59,7 +59,7 @@ module Cath
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end
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Rbbt.claim Rbbt.share.databases.CATH.CathDomainList, :proc do
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-
domains = TSV.setup({}, :key_field => "Cath Domain", :
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+
domains = TSV.setup({}, :key_field => "Cath Domain", :fields => ["CATH domain name (seven characters)",
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"Class number", "Architecture number", "Topology number", "Homologous superfamily number", "S35 sequence cluster number",
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"S60 sequence cluster number", "S95 sequence cluster number", "S100 sequence cluster number", "S100 sequence count number",
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"Domain length", "Structure resolution (Angstroms)"], :type => :list)
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data/lib/rbbt/sources/pina.rb
CHANGED
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@@ -9,7 +9,7 @@ module Pina
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url = "http://cbg.garvan.unsw.edu.au/pina/download/Homo%20sapiens-20121210.txt"
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-
dumper = TSV::Dumper.new :type => :
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dumper = TSV::Dumper.new :type => :double,
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:key_field => 'UniProt/SwissProt Accession', :namespace => Organism.default_code("Hsa"),
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:fields => ['Interactor UniProt/SwissProt Accession', 'Method', 'Publication']
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data/share/Ensembl/release_dates
CHANGED
metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: rbbt-sources
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version: !ruby/object:Gem::Version
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-
version: 3.0.
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version: 3.0.24
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2015-
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date: 2015-05-13 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rbbt-util
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@@ -170,7 +170,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.
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rubygems_version: 2.4.6
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signing_key:
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specification_version: 4
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summary: Data sources for the Ruby Bioinformatics Toolkit (rbbt)
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