rbbt-sources 3.0.22 → 3.0.23
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- checksums.yaml +4 -4
- data/etc/allowed_biomart_archives +1 -0
- data/lib/rbbt/sources/reactome.rb +4 -2
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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|
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1
1
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---
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2
2
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SHA1:
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|
3
|
-
metadata.gz:
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|
4
|
-
data.tar.gz:
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|
3
|
+
metadata.gz: f378051f6e4cf0a83de22c0211f3db2447202d39
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|
4
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+
data.tar.gz: eb9ae98e8f5415d5f611ad62a47ccb3da692f322
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|
5
5
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SHA512:
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|
6
|
-
metadata.gz:
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|
7
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-
data.tar.gz:
|
|
6
|
+
metadata.gz: 03c04ed1804e4cf19c3397fd5362b3f495d6e66af8b60bb3619a59b2cd36d5a207c4f4ef3c01ba3dee11d886d8aa096bb8e7e8abaf20ec18df2d3ed123f146d0
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|
7
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+
data.tar.gz: f931f2764266e4e0aa4f26c8ef4147c41f668adf84e7b1959c6f4095953d3e90e7f97ab23569406232a57255171c4f8560870d687e88c362e1762b6fc31a84b1
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@@ -6,7 +6,8 @@ module Reactome
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|
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6
6
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self.subdir = "share/databases/Reactome"
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|
7
7
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8
8
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Reactome.claim Reactome.protein_pathways, :proc do
|
|
9
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-
url = "http://www.reactome.org/download/current/uniprot_2_pathways.stid.txt"
|
|
9
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+
#url = "http://www.reactome.org/download/current/uniprot_2_pathways.stid.txt"
|
|
10
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+
url = "http://www.reactome.org/download/current/UniProt2Reactome.txt"
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|
10
11
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tsv = TSV.open(Open.open(url), :key_field => 0, :fields => [1], :merge => true, :type => :double)
|
|
11
12
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tsv.key_field = "UniProt/SwissProt Accession"
|
|
12
13
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tsv.fields = ["Reactome Pathway ID"]
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@@ -15,7 +16,8 @@ module Reactome
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|
|
15
16
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end
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|
16
17
|
|
|
17
18
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Reactome.claim Reactome.pathway_names, :proc do
|
|
18
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-
url = "http://www.reactome.org/download/current/uniprot_2_pathways.stid.txt"
|
|
19
|
+
#url = "http://www.reactome.org/download/current/uniprot_2_pathways.stid.txt"
|
|
20
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+
url = "http://www.reactome.org/download/current/UniProt2Reactome.txt"
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|
19
21
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tsv = TSV.open(Open.open(url), :key_field => 1, :fields => [2], :type => :single)
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|
20
22
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tsv.key_field = "Reactome Pathway ID"
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|
21
23
|
tsv.fields = ["Pathway Name"]
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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|
|
1
1
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--- !ruby/object:Gem::Specification
|
|
2
2
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name: rbbt-sources
|
|
3
3
|
version: !ruby/object:Gem::Version
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|
4
|
-
version: 3.0.
|
|
4
|
+
version: 3.0.23
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|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Miguel Vazquez
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2015-
|
|
11
|
+
date: 2015-03-27 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: rbbt-util
|