rbbt-sources 3.0.20 → 3.0.21
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- checksums.yaml +4 -4
- data/lib/rbbt/sources/kegg.rb +7 -6
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: a686f483285faaa2c7521302fd223454376bf1e6
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4
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+
data.tar.gz: 13ab6b5b5d2456835cd22efdaa565f8dc2f4f427
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: f401eac37a9a177ab76c10602ed08fb6566b42ff670d14bb5706591f11e4f7bd530a87481e93035cda47573263ae3419635f89d151ad244ee944b48c5bfae84b
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7
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+
data.tar.gz: 664c6abd68715f4eb532dc1bcdff96a89adf11be6ef09a6bc095d6ee1dd833438bc4130be5c68d96118d7f551fec2f660548228661125539495eb6a985e1ffbc
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data/lib/rbbt/sources/kegg.rb
CHANGED
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@@ -99,11 +99,6 @@ if defined? Entity
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99
99
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# end
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100
100
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#end
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101
101
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102
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-
#def self.gene_kegg_pathway_index
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103
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-
# @@gene_kegg_pathway_index ||=
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104
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-
# KEGG.gene_pathway.tsv(:persist => true, :key_field => "KEGG Gene ID", :fields => ["KEGG Pathway ID"], :type => :flat, :merge => true)
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105
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-
#end
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106
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-
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107
102
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#property :to => :array2single do |new_format|
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108
103
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# case
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|
109
104
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# when format == new_format
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@@ -118,8 +113,14 @@ if defined? Entity
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118
113
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# end
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119
114
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#end
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120
115
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116
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+
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117
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+
def self.gene_kegg_pathway_index
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118
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+
@@gene_kegg_pathway_index ||=
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119
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+
KEGG.gene_pathway.tsv(:persist => true, :key_field => "KEGG Gene ID", :fields => ["KEGG Pathway ID"], :type => :flat, :merge => true)
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120
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+
end
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121
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+
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121
122
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property :kegg_pathways => :array2single do
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|
122
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-
@kegg_pathways ||= Gene.gene_kegg_pathway_index.values_at(*self.
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123
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+
@kegg_pathways ||= Gene.gene_kegg_pathway_index.values_at(*self.to("KEGG Gene ID")).
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123
124
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each{|pth| pth.organism = organism if pth.respond_to? :organism }.tap{|o| KeggPathway.setup(o, organism)}
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124
125
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end
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125
126
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: rbbt-sources
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 3.0.
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|
4
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+
version: 3.0.21
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Miguel Vazquez
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8
8
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autorequire:
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|
9
9
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bindir: bin
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|
10
10
|
cert_chain: []
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|
11
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-
date: 2015-01-
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|
11
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+
date: 2015-01-19 00:00:00.000000000 Z
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|
12
12
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dependencies:
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13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
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name: rbbt-util
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