rbbt-sources 3.0.20 → 3.0.21
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/rbbt/sources/kegg.rb +7 -6
- metadata +2 -2
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: a686f483285faaa2c7521302fd223454376bf1e6
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4
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data.tar.gz: 13ab6b5b5d2456835cd22efdaa565f8dc2f4f427
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SHA512:
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metadata.gz:
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data.tar.gz:
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6
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metadata.gz: f401eac37a9a177ab76c10602ed08fb6566b42ff670d14bb5706591f11e4f7bd530a87481e93035cda47573263ae3419635f89d151ad244ee944b48c5bfae84b
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7
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data.tar.gz: 664c6abd68715f4eb532dc1bcdff96a89adf11be6ef09a6bc095d6ee1dd833438bc4130be5c68d96118d7f551fec2f660548228661125539495eb6a985e1ffbc
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data/lib/rbbt/sources/kegg.rb
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@@ -99,11 +99,6 @@ if defined? Entity
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# end
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#end
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#def self.gene_kegg_pathway_index
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# @@gene_kegg_pathway_index ||=
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# KEGG.gene_pathway.tsv(:persist => true, :key_field => "KEGG Gene ID", :fields => ["KEGG Pathway ID"], :type => :flat, :merge => true)
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#end
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-
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#property :to => :array2single do |new_format|
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# case
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# when format == new_format
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@@ -118,8 +113,14 @@ if defined? Entity
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# end
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#end
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def self.gene_kegg_pathway_index
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@@gene_kegg_pathway_index ||=
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KEGG.gene_pathway.tsv(:persist => true, :key_field => "KEGG Gene ID", :fields => ["KEGG Pathway ID"], :type => :flat, :merge => true)
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end
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property :kegg_pathways => :array2single do
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@kegg_pathways ||= Gene.gene_kegg_pathway_index.values_at(*self.
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@kegg_pathways ||= Gene.gene_kegg_pathway_index.values_at(*self.to("KEGG Gene ID")).
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each{|pth| pth.organism = organism if pth.respond_to? :organism }.tap{|o| KeggPathway.setup(o, organism)}
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end
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: rbbt-sources
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version: !ruby/object:Gem::Version
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version: 3.0.
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version: 3.0.21
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2015-01-
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date: 2015-01-19 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rbbt-util
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