rbbt-rest 1.8.91 → 1.8.92

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 6cf03fba41515f04aef853de51d2441f4c043dcf
-  data.tar.gz: e3aa3f2010d414323526163a7eb869291e7e1d2c
+  metadata.gz: '048ae260816f8427d1754ff663cf796eb92d1131'
+  data.tar.gz: 168227880c00885ec5f648674f54c23a90835a9c
 SHA512:
-  metadata.gz: fa54e964b56bc7aa65e32af56d89d0977b0f85bebb6e560bb2455a8451289466f6ae92138f7c9983d9dbcf699750a8579fa0001676b196786764f758a6a3eeb4
-  data.tar.gz: a921e35a86d8503c193c92732ee5262fe0fe86c92b87960a47a30addca16e6173a409c42b360e5b560e6f357fe1984bdec15c456e86fc15e75e4c035e7d5b53c
+  metadata.gz: c4f00d35135c9ba95a4b8d63c3054126379e80964c96408f1da33a6c4b05b8da42382dabf602d6676d95f6e19cef6c69a1b25268de68c61a1cadea3319132691
+  data.tar.gz: dc6d1ab5e97a102b4dc51f78db88da8693e80c601028b6260d084b537f8462c46dd351fa6362432f9c72a9905b60cf80625b9b3da47626fe3e6a09d3e6019ee2

data/lib/rbbt/rest/helpers.rb

@@ -1,5 +1,26 @@
 module Sinatra
   module RbbtMiscHelpers
+    def file_mimetype(path)
+      require 'mimemagic'
+      mime = nil
+      Open.open(path) do |io|
+        begin
+          mime = MimeMagic.by_path(io) 
+          if mime.nil?
+            io.rewind
+            mime = MimeMagic.by_magic(io) 
+          end
+          if mime.nil?
+            io.rewind
+            mime = "text/tab-separated-values" if io.gets =~ /^#/ and io.gets.include? "\t"
+          end
+        rescue Exception
+          Log.exception $!
+        end
+      end
+      mime
+    end
+
     def OR_matrices(m1, m2)
       samples = m1.fields
       new = TSV.setup({}, :key_field => "Ensembl Gene ID", :fields => samples)

data/lib/rbbt/rest/workflow/jobs.rb

@@ -144,8 +144,9 @@ module WorkflowRESTHelpers
       content_type "text/tab-separated-values"
       job.path ? send_file(job.path) : halt(200, job.load.to_s)
     when :literal, :raw
-      content_type "text/plain"
       path = job.path
+      mime = file_mimetype path
+      content_type mime || "text/plain"
       if job.path
         if Open.remote? job.path
           Open.open(job.path, :nocache => true)

data/lib/rbbt/rest/workflow.rb

@@ -278,24 +278,25 @@ module Sinatra
 
         job = workflow.load_id(File.join(task, job))
 
-        require 'mimemagic'
         path = job.file(filename)
-        mime = nil
-        Open.open(path) do |io|
-          begin
-            mime = MimeMagic.by_path(io) 
-            if mime.nil?
-              io.rewind
-              mime = MimeMagic.by_magic(io) 
-            end
-            if mime.nil?
-              io.rewind
-              mime = "text/tab-separated-values" if io.gets =~ /^#/ and io.gets.include? "\t"
-            end
-          rescue Exception
-            Log.exception $!
-          end
-        end
+        #require 'mimemagic'
+        #mime = nil
+        #Open.open(path) do |io|
+        #  begin
+        #    mime = MimeMagic.by_path(io) 
+        #    if mime.nil?
+        #      io.rewind
+        #      mime = MimeMagic.by_magic(io) 
+        #    end
+        #    if mime.nil?
+        #      io.rewind
+        #      mime = "text/tab-separated-values" if io.gets =~ /^#/ and io.gets.include? "\t"
+        #    end
+        #  rescue Exception
+        #    Log.exception $!
+        #  end
+        #end
+        mime = file_mimetype(path)
         content_type mime if mime
         send_file path
       end

data/share/views/compass/layout.sass

@@ -44,7 +44,8 @@ body
   max-height: calc(100% - 10em)
   overflow: auto
 
-@media #{$only-large}
+//@media #{$only-large}
+@media #{$medium-or-larger}
   #top_menu > .item.title
     margin-left: 32px
   #top_menu > .favourite
@@ -186,7 +187,7 @@ table
         width: 100%
 
 
-@media #{$not-large}
+@media #{$not-medium}
   +small_screen
 
 #modal

data/share/views/compass/screen_sizes.sass

@@ -6,9 +6,12 @@ $very-large-screen: 1240px
 
 $not-very-small: "only screen and (min-width: #{$very-small-screen + 1})" 
 $not-small: "only screen and (min-width: #{$small-screen + 1})" 
+$not-medium: "only screen and (max-width: #{$medium-screen - 1})" 
 $not-large: "only screen and (max-width: #{$large-screen - 1})" 
 $not-very-large: "only screen and (max-width: #{$very-large-screen})" 
 
+$medium-or-larger: "only screen and (min-width: #{$medium-screen})" 
+
 $only-very-small: "only screen and (max-width: #{$very-small-screen})" 
 $only-small: "only screen and (max-width: #{$small-screen})" 
 $only-large: "only screen and (min-width: #{$large-screen})" 

data/share/views/partials/footers/bsc.haml

@@ -14,7 +14,7 @@
     %span.cns Centro Nacional de Supercomputación
 
   .description
-    %span.group Genome Informatics unit
+    %span.group Genome Informatics Unit
     %span.address  Nexus II Building. C/ Jordi Girona, 29. 08034 Barcelona (Spain)
 
   .meta.contact

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-rest
 version: !ruby/object:Gem::Version
-  version: 1.8.91
+  version: 1.8.92
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2018-02-15 00:00:00.000000000 Z
+date: 2018-02-16 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake