rbbt-rest 1.8.152 → 1.8.154

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: e27cf7773d763ae330e2be0ca5f07661f18998bf86c09249b7c5d33fc233b8d5
-  data.tar.gz: 8cab349ccfb9525341d7779f208505b57890889706c211737d0a29538f887c69
+  metadata.gz: a5d66dadd84c4328c97bc395bf66c183478988e8e3e11f31ab359d82563e2ad9
+  data.tar.gz: 4ee1e9191aeaa79db99622fc93853e29cac176ce77882e85eff6e5e80f2611b6
 SHA512:
-  metadata.gz: f3bbe0d5a8aee0611f7c780cab3b6c27fead82bef56ddd58d3c587b84e35aaeecf00cea6d722a7ea9bb8de012016779b0d2dbb52f86b904cb1f8617ed626505f
-  data.tar.gz: 23060fe4f7650865a13034ce9e84232b74b59b37cfe1a59f747728d33b5150bf4ee77b4de87761ff49129f671fe0116a2b781cf8e04d59eac735f835c908e20e
+  metadata.gz: 526d6a192bfc4a2784c76b67778aec3fd88dca7bbb5a493769fd8d350b5eccd2bb4c5d18b22893fcad8c1b1a2a7e0bbb141fdd0c4d40bed90d482c16038eb853
+  data.tar.gz: dfe8034d8a8f773212573729f888ada533444039404711479fb2e53b80b1077c8e35955f7d95ef5340c04b521ff5d0af82111c7238ad0428cdbcaaac79980a1c

data/lib/rbbt/rest/common/misc.rb

@@ -280,6 +280,7 @@ module RbbtRESTHelpers
   end
 
   def add_GET_param(url, param, value)
+    url = remove_GET_param(url, param)
     if url =~ /\?.+=/
       url + "&#{ param }=#{ value }"
     else

data/lib/rbbt/rest/common/table.rb

@@ -317,7 +317,7 @@ module RbbtRESTHelpers
 
     entity_options = options[:entity_options]
 
-    Misc.prepare_entity(value, type, entity_options) if Entity.formats[type] and not options[:unnamed]
+    value = Misc.prepare_entity(value, type, entity_options) if Entity.formats[type] and not options[:unnamed]
 
     orig_value = value
     value = value.link if value.respond_to? :link and not options[:unnamed]

data/lib/rbbt/rest/entity/rest.rb

@@ -3,7 +3,6 @@ require 'rbbt/rest/entity/list'
 
 module Entity
   module REST
-    USE_ENSEMBL = true
 
     REST_ENTITIES = Set.new
 
@@ -177,7 +176,6 @@ module Entity
     end
 
     def list_link(text = nil, id = nil, options = {})
-      options = Misc.add_defaults options, :ensembl => USE_ENSEMBL
       ensembl = Misc.process_options options, :ensembl
 
       if ensembl and self.respond_to? :ensembl and self.format !~ /^Ensembl /

data/share/views/partials/dependencies.haml

@@ -15,7 +15,7 @@
       - dep_status = "done" if dep.path.exists?
 
     - dep_status ||= dep.status
-    - if ! remote && dep.file(:progress).exists?
+    - if ! remote && ! dep_status == 'done' && dep.file(:progress).exists?
       - pgr = dep.file(:progress).yaml
       - if pgr and pgr[:last_percent]
         - start = pgr[:start]
@@ -63,7 +63,7 @@
         - elsif Module === dep_workflow
           - wf = dep_workflow
 
-        - if Open.remote?(dep.path)
+        - if remote
           - url = dep.path.split("?").first
           %a(href=url) #{ name }  
 

data/share/views/public/js/helpers/_ellipsis.js

@@ -29,7 +29,12 @@ function contract_ellipsis(elem, max){
       var links = [];
       var head = elements.slice(0, max).removeClass('long');
       head.each(function(){ links.push(this.outerHTML)})
-      new_content = links.join(" ");
+
+      if (elements.first().hasClass('lines'))
+        new_content = links.join(" ");
+      else
+        new_content = links.join(", ");
+
       elem.html(new_content);
     }
 

data/share/views/public/plugins/cytoscapejs/cytoscape.js

@@ -1 +1 @@
-share/views/public/plugins/cytoscapejs/cytoscape.umd.js
+./cytoscape.umd.js

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-rest
 version: !ruby/object:Gem::Version
-  version: 1.8.152
+  version: 1.8.154
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2022-07-26 00:00:00.000000000 Z
+date: 2022-12-15 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake