rbbt-rest 1.4.9 → 1.4.10
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checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 7238b912c301e0c3359e037b1c067332a8f6b413
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data.tar.gz: 502e447f4643efa03d48f63d22cc356e8c320623
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 5bc4bfcecac880d3855f412135959b0a4b4ae66e24e6f5368be23c00a5f6a21d33c76d95f38842a9f9b0b5dd8b28a60e6b7fec09d9536c1aa9b8ed293cfbe37c
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data.tar.gz: d9ed1bf96e0e8c7c9c52ff30b9921b1512cdc6dad883aa6ce5d57dcf4772b483600e8ffabd69975438bd51ebd7676e02fc65b63c1c9770358394c6c4c4092caa
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@@ -37,7 +37,8 @@ module KnowledgeBaseRESTHelpers
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def user_kb(user)
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@@user_kbs ||= {}
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@@user_kbs[user] ||= begin
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-
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dir = KnowledgeBaseRESTHelpers.knowledge_base_dir.users.common
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kb = KnowledgeBase.new(dir, Organism.default_code("Hsa"))
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KnowledgeBaseRESTHelpers.syndications.each do |name, new|
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Log.low "Syndicating database #{ name } for user #{user}"
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@@ -59,8 +60,10 @@ module KnowledgeBaseRESTHelpers
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(namespace and namespace != kb.namespace) ? kb.version(namespace) : kb
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end
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-
def association_table(associations, options = {})
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def association_table(associations = nil, options = {}, &block)
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options = Misc.add_defaults options, :row_ids => :consume, :footer => true
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associations = yield if block_given?
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tsv = case associations
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when Array
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associations.tsv
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@@ -9,3 +9,12 @@
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= action_parameters nil, :class => 'filter_controls' do
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- header.each do |field|
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- input field, :string, "Filter for #{ field }", filter_values[field]
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:markdown
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Filters can be specified in several ways:
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- *String of text*: perfect match (e.g. `Cancer`)
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- *Regular expression*: flexible match (e.g. `/(bladder|breast)\s+cancer/i`)
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- *Numeric comparison*: lower of grater than (e.g. `< 0.1` or `>= 2`)
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- *Names: for entities* with names, such as genes or pathways; regular expression accepted (e.g. `:name:SF3B1` or `:name:/CDK\d/`)
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metadata
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: rbbt-rest
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version: !ruby/object:Gem::Version
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version: 1.4.
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version: 1.4.10
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platform: ruby
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authors:
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- Miguel Vazquez
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2014-10-
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date: 2014-10-21 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rake
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