rbbt-rest 1.2.4 → 1.2.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +8 -8
- data/lib/rbbt/rest/common/cache.rb +0 -2
- data/lib/rbbt/rest/knowledge_base/helpers.rb +16 -14
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,15 +1,15 @@
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---
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!binary "U0hBMQ==":
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metadata.gz: !binary |-
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-
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+
ZDE0NjcyMTdiNWZhZDU5OWUyOTdhODI5NTg4ZmYzZDQwNzNkN2FmNw==
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data.tar.gz: !binary |-
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-
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MjNmOThiNmMyNGRmYjkwNTBiNjcwNjI1YmNhMjE1MThlNzI0NGNhOQ==
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!binary "U0hBNTEy":
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metadata.gz: !binary |-
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NjgwMjBhMzgyYzVmZDc1ODc0NzE5MmUzNGUyODI4MzYzMGFjMDA5NTI0NzNl
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ODJiZjA5ODU4MDFmNzhmNTdlODdiNjgwNDA0ZDVlYzNjYjY1ZjUxZjUxYjRl
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MmE5ZGQ1ZTQ4ZDdjNzcyNDc0YjhlZWIwOWYyNDM1MWFiMzc1ZTc=
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data.tar.gz: !binary |-
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ZjBhYWUzNzZkZmQzYTllN2E4MDUzZTM0NDc2YTg4N2FlODNiYmI4Mjg0OGEx
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ZDU5ZjZjODhkZTllNjVkNDZmYzE2ZGFjNjc1NDk0MjU3MzU0YTQyZjRmOGE5
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YjMyYjlhNjhhOGRmOWE2ZjdlZDYxNzkzMDNhZmE2ZGE2YjI4YWM=
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@@ -78,7 +78,6 @@ module RbbtRESTHelpers
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tsv.excel(excel_file, :name => @excel_use_name,:sort_by => @excel_sort_by, :sort_by_cast => @excel_sort_by_cast)
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send_file excel_file, :type => 'application/vnd.ms-excel', :filename => 'table.xls'
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else
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cache_control :public, :max_age => 360000 if production?
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send_file fragment_file
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end
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else
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@@ -128,7 +127,6 @@ module RbbtRESTHelpers
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when send_file
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send_file step.path
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else
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cache_control :public, :max_age => 360000 if production?
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step.load
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end
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else
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@@ -26,33 +26,35 @@ module KnowledgeBaseRESTHelpers
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end
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def get_kb(name)
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@@knowledge_bases ||= IndiferentHash.setup({})
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case name
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when :genomics, "genomics"
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@@knowledge_bases[name] ||= Genomics.knowledge_base
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else
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-
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@@knowledge_bases[name] ||= KnowledgeBase.new File.join(KnowledgeBaseRESTHelpers.knowledge_base_dir, name)
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end
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end
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def user_kb(user)
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@@user_knowledge_bases ||= IndiferentHash.setup({})
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@@user_knowledge_bases[user] ||= begin
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kb = KnowledgeBase.new File.join(KnowledgeBaseRESTHelpers.knowledge_base_dir, File.join('user', user)), "Hsa/jan2013"
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kb.format["Gene"] = "Ensembl Gene ID"
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-
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kb.syndicate Genomics.knowledge_base, :genomics
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user_studies[user].each do |study|
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next if study.all_mutations.length > 50_000
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kb.syndicate study.knowledge_base, study
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end
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kb
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end
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end
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def get_knowledge_base(name, namespace = nil)
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@@knowledge_bases ||= IndiferentHash.setup({})
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@@knowledge_bases[name] ||= begin
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kb = case
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when [:genomics, "genomics"].include?(name)
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Genomics.knowledge_base
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