rbbt-rest 1.2.29 → 1.2.30

checksums.yaml

@@ -1,15 +1,15 @@
 ---
 !binary "U0hBMQ==":
   metadata.gz: !binary |-
-    M2ZiYTdmYzg0MWE3ZWIxNWI3MWE1MGZlNzQzZjcyZThiYmE1ZTE4Mw==
+    NjI5YmRlOTNhMjY0NzVhNTA4YTI4Y2NiZjhmZGQ4ZWU3NGY5MTJlMg==
   data.tar.gz: !binary |-
-    YjdlNzdiZGNjZjYxZTgwYTMwYmI2N2Q4YTc2NmQ5NTk3MGE5N2JiYQ==
+    MGJhZTIyMDQwY2U2NzY3ZTIzNDIzZDAzNDBlYThlM2NkZjBkOGZhNQ==
 SHA512:
   metadata.gz: !binary |-
-    MWNmMDA5NGZjNTIyNDRiODY4NDEwOGQ1MmY3MTg3MDI0YWQ5NjljZTdjZWRk
-    OTVhYzQ2ZmE5ZmM2MzI1MDRiMmVkZjliZmI0YmMzZjI2ODQzMGM0ZjM3ZDQx
-    NmMxNDM5Nzk5NmQ0YTAwYTJlMzcyMzhmMzA3MmI5YWNjYTYxMTA=
+    NGNhN2Q1MzIxYzAyNDFjYzI0ODBkYTNlMzUwMmY2ZDhmMTQ5ZmNmNjQ1ZjEw
+    NGM5ZDY0ZTI1OTlhZjEzYWQ1MzU1MGJjMGUwY2U3N2MwYTEwZTQ3N2ZlOTk2
+    ODUxYTMzMDFjMGZmY2YwNzM3YThmZmFlNWIzOGI0OTNkNmJjMGI=
   data.tar.gz: !binary |-
-    NzgyMjgzYjMzN2ZlNzlkNDI0Yzk3OTE0YzlhYmE0NjVjYTY4ZDA4ZmIzZDU1
-    OTE4MTVlMWZhYjA3YWZjMDU5Y2ZiMDE4NGRkYjdiYzAzMTFkYjM0OGFhNTY1
-    ZTI3NDc5YWE5ZDYyOTNmYjZkNGMwZTI3ZWIwMjg1MGU4OWViN2U=
+    ODdmMmU2NTZjMjE5NjkzYTEzYjgwMWRhN2EwZDkxYjgxZDk1MTlkYzc3ZDQw
+    YzUyYzZiZjc0MDA3NjdlNDE4NmRlYTE4YzAzOTYyMTNkMTRkYzY2MzJhYjMx
+    ZDA1ZDY2ZTljN2NhNWM1ZmEyYTZjMDEwNDc5OWM4ZDc5N2MwMDc=

data/lib/rbbt/rest/knowledge_base.rb

@@ -11,6 +11,20 @@ module Sinatra
       base.module_eval do
         helpers KnowledgeBaseRESTHelpers
 
+        #{{{ Info
+        
+        get '/knowledge_base/info/:name/:database/:pair' do 
+          name = consume_parameter :name
+          database = consume_parameter :database
+          pair = consume_parameter :pair
+
+          kb = get_knowledge_base name
+          index = kb.get_index(database)
+
+          AssociationItem.setup(pair, kb, database, false)
+          template_render('knowledge_base_partials/association', {:pair => pair, :kb => kb, :index => index, :database => database}, "Association: #{ pair }")
+        end
+        
         #{{{ Children
 
         get '/knowledge_base/:name/:database/entity_children/:entity' do

data/lib/rbbt/rest/main.rb

@@ -132,6 +132,12 @@ module Sinatra
         error RbbtRESTHelpers::TemplateMissing do |e|
           halt 404, e.message
         end
+
+        if production?
+          error Exception do |e|
+            halt 404, e.message
+          end
+        end
       end
     end
   end

data/share/views/knowledge_base_partials/association.haml

@@ -0,0 +1,22 @@
+- values = index[pair] 
+- fields = index.fields
+- tsv = TSV.setup({}, :key_field => "Num", :fields => fields, :type => :list)
+- values.zip(fields).each_with_index do |p,i|
+  - value, field = p
+  - value.split(";;").each_with_index do |part,j|
+    - tsv[j] ||= [nil] * fields.length
+    - tsv[j][i] = part 
+- tsv.entity_options = kb.entity_options
+- tsv.namespace = kb.namespace
+
+- if tsv.fields.include? "PMID"
+  - tsv.add_field "Title" do |k,v|
+    - v["PMID"].title
+
+- source = pair.source_entity
+- target = pair.target_entity
+- source_name = source.respond_to?(:name) ? source.name || name : source
+- target_name = target.respond_to?(:name) ? target.name || name : target
+- name = [source_name, target_name] * "~"
+= tsv2html(tsv, :table_id => name)
+

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-rest
 version: !ruby/object:Gem::Version
-  version: 1.2.29
+  version: 1.2.30
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-11-27 00:00:00.000000000 Z
+date: 2013-11-28 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake
@@ -269,6 +269,7 @@ files:
 - share/views/job_result/text.haml
 - share/views/job_result/tsv.haml
 - share/views/job_result/yaml.haml
+- share/views/knowledge_base_partials/association.haml
 - share/views/layout.haml
 - share/views/layout/top_menu.haml
 - share/views/layout/top_menu/favourites.haml