rbbt-image 0.1.37 → 0.1.38

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 45c46d847d1522d0d774cbdad29d9ba70bb1cc42036234dc53de6d0723403e02
-  data.tar.gz: eef195a183125dbb8f9c3d3f12157a3bff0c4ed12ef1118cd88acf3878d7bba4
+  metadata.gz: 217c640720936293815a4871cdef2c80d44a53f981ab3fa549401f826145206b
+  data.tar.gz: 25cd8cfb00abddde8d8047b2b7f46d512ae65d0eed1551a4e9974b986d27f27e
 SHA512:
-  metadata.gz: e3d2cac785c2cd0d192f2913af0f40e6a1abb65b3daa8efd8a2e4f4c97aba672c6421e2e1a8222f753694ac7e52493de3be2af7080943e3bcaf3faec16e44aa2
-  data.tar.gz: 90c007ee52794941a8c421882779d2e6a1e147e83e9c77e59a1dd4e57e248bed87e4fd20165d530a71933e783b1e929eaa652aec86b6dc1afb176cd01a3984db
+  metadata.gz: e31fc043b5db3d46e82cb75ccf7776b6e6e1fd276b73032608fccad466d24d2cc58edbe2836626da28cb0614b705718d748edb2517fe38601238cf119288ccc3
+  data.tar.gz: 26a90fd5f55b334c1ca7892d28e4fcb94852e74da89077866f3193c53a580be147892585c568b6077a8e0a24b60e4815d174229031031aa703353e3eb4e0f3f7

data/bin/build_rbbt_provision_sh.rb

@@ -302,7 +302,7 @@ EOF
 
 
 if docker_image = options[:docker]
-  container_dependency = options[:container_dependency] || 'ubuntu:disco'
+  container_dependency = options[:container_dependency] || 'ubuntu:focal'
   dockerfile = options[:dockerfile] || File.join(root_dir, 'Dockerfile')
   dockerfile_text = Open.read(dockerfile)
   dockerfile_text.sub!(/^FROM.*/,'FROM ' + container_dependency) if container_dependency
@@ -339,7 +339,7 @@ end
 
 if singularity_image = options[:singularity]
 
-  container_dependency = options[:container_dependency] || 'ubuntu:disco'
+  container_dependency = options[:container_dependency] || 'ubuntu:focal'
   TmpFile.with_file(nil, false) do |dir|
     Path.setup(dir)
 

data/share/provision_scripts/R_packages.sh

@@ -37,7 +37,10 @@ R_install_packages 'digest' 'gtable' 'reshape2' 'scales' 'proto'
 
 R_CMD_install 'https://cran.r-project.org/src/contrib/Archive/ggplot2/ggplot2_1.0.0.tar.gz' ggplot2
 
-R_install_packages NMF Cairo drc Rserve gridSVG ggthemes mclust randomForest viper
+R_install_packages NMF Cairo drc gridSVG ggthemes mclust randomForest viper
+
+echo 'install.packages("Rserve", repos="http://www.rforge.net/")' | R --vanilla
+
 R_install_packages pheatmap VennDiagram Hmisc pls gridSVG
 R_install_packages tidyverse
 

data/share/provision_scripts/ubuntu_setup.sh

@@ -76,6 +76,7 @@ DEBIAN_FRONTEND=noninteractive apt-get -y install \
   vim \
   wget \
   libc6 \
+  time numactl \
   bison autoconf g++ libxslt1-dev make \
   zlib1g-dev libbz2-dev libreadline-dev \
   rsync wget curl git openssl libyaml-0-2 libyaml-dev \

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-image
 version: !ruby/object:Gem::Version
-  version: 0.1.37
+  version: 0.1.38
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2020-03-31 00:00:00.000000000 Z
+date: 2020-11-02 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rbbt-util