rbbt-dm 1.1.60 → 1.1.61
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- checksums.yaml +4 -4
- data/share/R/MA.R +2 -2
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: d24ba3529b0cd6c9470d87e9c947110a37e82f50345d8cf6242bd0cdee335afb
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4
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+
data.tar.gz: 8718681f7cd3bd48c4ad1c8f96ceaadd2cb737e8f6312b31549e1f9b25d0026c
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 452cfe66ec260c362290d7b1e119a246df32bd145ccc8942f625aa9ac8737d876344396fe2fe03a33ddfd8f7a31483cdaf9973ed3fa5f7f99447847f0cf9aa6f
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7
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+
data.tar.gz: 8c5911faac614b7a06a1d07d02dd2fed9ddf7049bc97d37303e612d764855714529be2d18c68ee7116fa3bae551fe94c696f8c45c908236e4bdeb2923829b3cb
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data/share/R/MA.R
CHANGED
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@@ -69,7 +69,7 @@ rbbt.dm.matrix.differential.DESeq <- function(expr, subset.main, subset.contrast
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69
69
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condition_values = rep(c("contrast"), length(subset.contrast))
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70
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condition_values = c(condition_values, rep(c("condition"), length(subset.main)))
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names = c(subset.contrast, subset.main)
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72
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-
conditions = data.frame(condition =
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72
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+
conditions = data.frame(condition = factor(condition_values, levels=c("contrast", "condition")))
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expr = expr[,names]
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@@ -79,7 +79,7 @@ rbbt.dm.matrix.differential.DESeq <- function(expr, subset.main, subset.contrast
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79
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filter <- HTSFilter(dds, s.len=25, plot=FALSE)$filteredData
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81
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82
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-
res <- lfcShrink(filter, type="apeglm", coef="
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82
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+
res <- lfcShrink(filter, type="apeglm", coef="condition_condition_vs_contrast")
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return(res)
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}
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: rbbt-dm
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3
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version: !ruby/object:Gem::Version
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4
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-
version: 1.1.
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4
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+
version: 1.1.61
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Miguel Vazquez
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8
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autorequire:
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9
9
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bindir: bin
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10
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cert_chain: []
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11
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-
date: 2022-11-
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11
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+
date: 2022-11-07 00:00:00.000000000 Z
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dependencies:
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13
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- !ruby/object:Gem::Dependency
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14
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name: rbbt-util
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