ragnar-cli 0.1.0.pre.1

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data/LICENSE.txt

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+The MIT License (MIT)
+
+Copyright (c) 2024 Your Name
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

data/README.md

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+# Ragnar
+
+A complete Ruby implementation of Retrieval-Augmented Generation (RAG) pipeline using native Ruby ML/NLP gems.
+
+## Overview
+
+Ragnar provides a production-ready RAG pipeline for Ruby applications, integrating:
+- **red-candle**: LLM inference, embeddings, and reranking
+- **lancelot**: Vector database with Lance columnar storage
+- **clusterkit**: UMAP dimensionality reduction and clustering
+- **baran**: Text chunking and splitting
+
+## Architecture
+
+### Complete RAG Pipeline
+
+```mermaid
+graph TB
+    subgraph "Indexing Pipeline"
+        A[Documents] --> B[Chunker<br/>baran]
+        B --> C[Embedder<br/>red-candle]
+        C --> D[Vector DB<br/>lancelot]
+        D --> E[UMAP Training<br/>annembed]
+        E --> F[Reduced Embeddings]
+    end
+
+    subgraph "Query Pipeline"
+        LLMCache[LLM Manager<br/>Cached Instance]
+        Q[User Query] --> QR[Query Rewriter<br/>red-candle LLM]
+        QR --> QE[Query Embedder<br/>red-candle]
+        QE --> VS[Vector Search<br/>lancelot]
+        VS --> RRF[RRF Fusion]
+        RRF --> RR[Reranker<br/>red-candle]
+        RR --> RP[Context Repacker<br/>Deduplication & Organization]
+        RP --> LLM[Response Generation<br/>red-candle LLM]
+        LLM --> R[Answer]
+
+        LLMCache -.-> QR
+        LLMCache -.-> LLM
+    end
+
+    D -.-> VS
+    F -.-> VS
+```
+
+### Indexing Process
+
+```mermaid
+sequenceDiagram
+    participant User
+    participant CLI
+    participant Indexer
+    participant Chunker
+    participant Embedder
+    participant Database
+
+    User->>CLI: ragnar index ./documents
+    CLI->>Indexer: index_path(path)
+
+    loop For each file
+        Indexer->>Indexer: Read file
+        Indexer->>Chunker: split_text(content)
+        Chunker-->>Indexer: chunks[]
+
+        loop For each chunk
+            Indexer->>Embedder: embed(text)
+            Embedder-->>Indexer: embedding[768]
+            Indexer->>Database: add_document(chunk, embedding)
+        end
+    end
+
+    Database-->>CLI: stats
+    CLI-->>User: Indexed N documents
+```
+
+### UMAP Dimensionality Reduction
+
+```mermaid
+flowchart LR
+    A[High-Dim Embeddings<br/>768D] --> B[UMAP Training]
+    B --> C[Model]
+    C --> D[Low-Dim Embeddings<br/>2-50D]
+
+    B --> E[Parameters]
+    E --> F[n_neighbors]
+    E --> G[n_components]
+    E --> H[min_dist]
+
+    D --> I[Benefits]
+    I --> J[Faster Search]
+    I --> K[Less Memory]
+    I --> L[Visualization]
+```
+
+### Query Processing Pipeline
+
+```mermaid
+flowchart TB
+    Q[User Query] --> QA[Query Analysis<br/>w/ Cached LLM]
+
+    QA --> CI[Clarified Intent]
+    QA --> SQ[Sub-queries]
+    QA --> KT[Key Terms]
+
+    SQ --> EMB[Embed Each Query]
+    EMB --> VS[Vector Search]
+
+    VS --> RRF[RRF Fusion]
+    RRF --> RANK[Reranking]
+
+    RANK --> TOP[Top-K Documents]
+    TOP --> CTX[Context Preparation]
+
+    CTX --> REPACK[Context Repacking<br/>Deduplication<br/>Summarization<br/>Organization]
+
+    REPACK --> GEN[LLM Generation<br/>w/ Same Cached LLM]
+    CI --> GEN
+
+    GEN --> ANS[Final Answer]
+```
+
+## Installation
+
+### As a Gem
+
+```bash
+gem install ragnar
+```
+
+### From Source
+
+```bash
+git clone https://github.com/yourusername/ragnar.git
+cd ragnar
+bundle install
+gem build ragnar.gemspec
+gem install ./ragnar-*.gem
+```
+
+## Quick Start
+
+### 1. Index Documents
+
+```bash
+# Index a directory of text files
+ragnar index ./documents
+
+# Index with custom settings
+ragnar index ./documents \
+  --chunk-size 1000 \
+  --chunk-overlap 100
+```
+
+### 2. Train UMAP (Optional)
+
+Reduce embedding dimensions for faster search:
+
+```bash
+# Train UMAP model (auto-adjusts parameters based on data)
+ragnar train-umap \
+  --n-components 50 \
+  --n-neighbors 15
+
+# Apply to all embeddings
+ragnar apply-umap
+```
+
+### 3. Query the System
+
+```bash
+# Basic query
+ragnar query "What is the main purpose of this project?"
+
+# Verbose mode shows all intermediate processing steps
+ragnar query "How does the chunking process work?" --verbose
+# Or use short form
+ragnar query "How does the chunking process work?" -v
+
+# JSON output for programmatic use
+ragnar query "Explain the embedding model" --json
+
+# Adjust number of retrieved documents
+ragnar query "What are the key features?" --top-k 5
+
+# Combine options for detailed analysis
+ragnar query "Compare Ruby with Python" -v --top-k 5
+```
+
+#### Verbose Mode Output
+
+When using `--verbose` or `-v`, you'll see:
+1. **Query Analysis**: Original query, clarified intent, sub-queries, and key terms
+2. **Document Retrieval**: Each sub-query's embedding and search results
+3. **RRF Fusion**: How multiple search results are combined
+4. **Reranking**: Top documents after relevance scoring
+5. **Context Repacking**: How retrieved chunks are organized and compressed
+6. **Response Generation**: The final LLM prompt and response
+7. **Final Results**: Confidence score and source attribution
+
+### 4. Check Statistics
+
+```bash
+ragnar stats
+```
+
+## Features
+
+### Intelligent Query Processing
+
+1. **Query Rewriting**: Clarifies intent and generates sub-queries
+2. **Multi-Query Search**: Searches with multiple query variations
+3. **RRF Fusion**: Combines results using Reciprocal Rank Fusion
+4. **Reranking**: Uses cross-encoder for precise relevance scoring
+5. **Context Repacking**: Deduplicates and organizes retrieved chunks for optimal LLM consumption
+6. **LLM Caching**: Single LLM instance shared between query rewriting and response generation
+7. **Contextual Response**: Generates answers with LLM based on repacked context
+
+### Embedding Management
+
+- **High-dimensional embeddings** (768D) for semantic accuracy
+- **UMAP reduction** to lower dimensions (2-50D) for efficiency
+- **Automatic parameter adjustment** based on dataset size
+- **Batch processing** for large document collections
+
+### Database Features
+
+- **Lance columnar format** for efficient storage
+- **Vector similarity search** with configurable metrics
+- **Metadata tracking** for source attribution
+- **Incremental indexing** support
+
+## Configuration
+
+### Default Settings
+
+```ruby
+DEFAULT_DB_PATH = "ragnar_database"
+DEFAULT_CHUNK_SIZE = 512
+DEFAULT_CHUNK_OVERLAP = 50
+DEFAULT_EMBEDDING_MODEL = "jinaai/jina-embeddings-v2-base-en"
+```
+
+### Supported Models
+
+**Embedding Models** (via red-candle):
+- jinaai/jina-embeddings-v2-base-en
+- BAAI/bge-base-en-v1.5
+- sentence-transformers/all-MiniLM-L6-v2
+
+**LLM Models** (via red-candle):
+- Qwen/Qwen2.5-1.5B-Instruct
+- microsoft/phi-2
+- TinyLlama/TinyLlama-1.1B-Chat-v1.0
+
+**Reranker Models** (via red-candle):
+- BAAI/bge-reranker-base
+- cross-encoder/ms-marco-MiniLM-L-6-v2
+
+## Advanced Usage
+
+### Programmatic API
+
+```ruby
+require 'ragnar'
+
+# Initialize components
+indexer = Ragnar::Indexer.new(
+  db_path: "my_database",
+  chunk_size: 1000
+)
+
+# Index documents
+stats = indexer.index_path("./documents")
+
+# Query the system
+processor = Ragnar::QueryProcessor.new(db_path: "my_database")
+result = processor.query(
+  "What is Ruby?",
+  top_k: 5,
+  verbose: true
+)
+
+puts result[:answer]
+puts "Confidence: #{result[:confidence]}%"
+```
+
+### Custom Chunking Strategies
+
+```ruby
+chunker = Ragnar::Chunker.new(
+  chunk_size: 1000,
+  chunk_overlap: 200,
+  separators: ["\n\n", "\n", ". ", " "]
+)
+
+chunks = chunker.chunk_text(document_text)
+```
+
+### Embedding Optimization
+
+```ruby
+# For small datasets (<100 documents)
+processor = Ragnar::UmapProcessor.new
+processor.train(
+  n_components: 10,  # Fewer components
+  n_neighbors: 5,    # Fewer neighbors
+  min_dist: 0.05     # Tighter clusters
+)
+
+# For large datasets (>10,000 documents)
+processor.train(
+  n_components: 50,  # More components
+  n_neighbors: 30,   # More neighbors
+  min_dist: 0.1      # Standard distance
+)
+```
+
+## Performance Considerations
+
+### Memory Usage
+
+- **Indexing**: ~100MB per 1000 documents (768D embeddings)
+- **UMAP Training**: ~80MB for 10,000 vectors
+- **Query Processing**: ~50MB overhead for models (reduced with LLM caching)
+- **LLM Caching**: Single model instance (~500MB-2GB depending on model size)
+
+### Speed Benchmarks
+
+- **Indexing**: ~10 documents/second (including embedding)
+- **UMAP Training**: 30-60 seconds for 10,000 vectors
+- **Query Processing**: 1-3 seconds per query (faster with cached LLM)
+- **Vector Search**: <100ms for 100,000 vectors
+- **Context Repacking**: <50ms for typical document sets
+- **LLM Loading**: 2-5 seconds (only on first query with caching)
+
+### Optimization Tips
+
+1. **Use UMAP** for datasets >1000 documents
+2. **Batch index** large document collections
+3. **Cache embeddings** for repeated queries
+4. **Adjust chunk size** based on document type:
+   - Technical docs: 500-1000 tokens
+   - Narrative text: 200-500 tokens
+   - Q&A content: 100-300 tokens
+
+## Troubleshooting
+
+### Common Issues
+
+**UMAP fails with "index out of bounds"**
+- Cause: Too few samples for the requested parameters
+- Solution: System auto-adjusts, but you can manually set lower n_neighbors
+
+**Slow indexing performance**
+- Try smaller chunk sizes
+- Use batch processing
+- Consider using a faster embedding model
+
+**Poor query results**
+- Index more documents (RAG works best with 100+ documents)
+- Adjust chunk size and overlap
+- Try different embedding models
+
+## Development
+
+```bash
+# Install dependencies
+bundle install
+
+# Run tests
+bundle exec rspec
+
+# Build gem
+gem build ragnar.gemspec
+```
+
+## Architecture Details
+
+### Component Responsibilities
+
+| Component | Purpose | Key Methods |
+|-----------|---------|-------------|
+| Chunker | Split text into semantic chunks | `chunk_text()` |
+| Embedder | Generate vector embeddings | `embed_text()`, `embed_batch()` |
+| Database | Store and search vectors | `add_document()`, `search_similar()` |
+| LLMManager | Cache and manage LLM instances | `get_llm()`, `default_llm()` |
+| ContextRepacker | Optimize retrieved context | `repack()`, `repack_with_summary()` |
+| QueryRewriter | Analyze and expand queries | `rewrite()` |
+| QueryProcessor | Orchestrate query pipeline | `query()` |
+| UmapProcessor | Reduce embedding dimensions | `train()`, `apply()` |
+
+### Data Flow
+
+1. **Documents** → Chunker → Text chunks
+2. **Text chunks** → Embedder → Embeddings (768D)
+3. **Embeddings** → Database → Stored vectors
+4. **Stored vectors** → UMAP → Reduced vectors (2-50D)
+5. **Query** → Rewriter (w/ cached LLM) → Sub-queries
+6. **Sub-queries** → Embedder → Query vectors
+7. **Query vectors** → Database → Similar documents
+8. **Documents** → Reranker → Top results
+9. **Top results** → Context Repacker → Optimized context
+10. **Optimized context** → LLM (same cached instance) → Final answer
+
+## Contributing
+
+Contributions are welcome! Please:
+
+1. Fork the repository
+2. Create a feature branch
+3. Add tests for new functionality
+4. Ensure all tests pass
+5. Submit a pull request
+
+## License
+
+MIT License - see LICENSE file for details
+
+## Acknowledgments
+
+This project integrates several excellent Ruby gems:
+- [red-candle](https://github.com/red-candle) - Ruby ML/LLM toolkit
+- [lancelot](https://github.com/lancelot) - Lance database bindings
+- [clusterkit](https://github.com/cpetersen/clusterkit) - UMAP and clustering implementation
+- [parsekit](https://github.com/cpetersen/parsekit) - Content extraction
+- [baran](https://github.com/baran) - Text splitting utilities
+
+## Roadmap
+
+- [ ] Add support for PDF and HTML documents
+- [ ] Implement incremental indexing
+- [ ] Add conversation memory for multi-turn queries
+- [ ] Support for hybrid search (vector + keyword)
+- [ ] Web UI for interactive queries
+- [ ] Docker containerization
+- [ ] Performance benchmarking suite
+- [ ] Support for multiple embedding models simultaneously
+- [ ] Query result caching
+- [ ] Automatic index optimization

data/exe/ragnar

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+#!/usr/bin/env ruby
+# frozen_string_literal: true
+
+require "ragnar"
+
+Ragnar::CLI.start(ARGV)

data/lib/ragnar/chunker.rb

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+module Ragnar
+  class Chunker
+    attr_reader :chunk_size, :chunk_overlap
+    
+    def initialize(chunk_size: Ragnar::DEFAULT_CHUNK_SIZE, chunk_overlap: Ragnar::DEFAULT_CHUNK_OVERLAP)
+      @chunk_size = chunk_size
+      @chunk_overlap = chunk_overlap
+      # Use RecursiveCharacterTextSplitter for better chunking
+      @splitter = Baran::RecursiveCharacterTextSplitter.new(
+        chunk_size: chunk_size,
+        chunk_overlap: chunk_overlap,
+        separators: ["\n\n", "\n", ". ", " ", ""]
+      )
+    end
+    
+    def chunk_text(text, metadata = {})
+      return [] if text.nil? || text.strip.empty?
+      
+      # Use Baran to split the text into chunks
+      chunks = @splitter.chunks(text)
+      
+      # Add metadata to each chunk
+      # Baran returns chunks as hashes with :text and :cursor keys
+      chunks.map.with_index do |chunk_data, index|
+        # Extract the actual text from the chunk
+        chunk_text = if chunk_data.is_a?(Hash)
+          chunk_data[:text] || chunk_data["text"]
+        else
+          chunk_data.to_s
+        end
+        
+        {
+          text: chunk_text,
+          index: index,
+          metadata: metadata.merge(
+            chunk_index: index,
+            total_chunks: chunks.size,
+            chunk_size: chunk_text.size
+          )
+        }
+      end
+    rescue => e
+      puts "Error chunking text: #{e.message}"
+      []
+    end
+    
+    def chunk_file(file_path)
+      unless File.exist?(file_path)
+        raise "File not found: #{file_path}"
+      end
+      
+      text = File.read(file_path, encoding: 'utf-8', invalid: :replace, undef: :replace)
+      
+      metadata = {
+        file_path: File.absolute_path(file_path),
+        file_name: File.basename(file_path),
+        file_size: File.size(file_path),
+        file_modified: File.mtime(file_path).to_s
+      }
+      
+      chunk_text(text, metadata)
+    end
+    
+    def chunk_documents(documents)
+      all_chunks = []
+      
+      documents.each do |doc|
+        if doc.is_a?(String)
+          # If it's a file path
+          if File.exist?(doc)
+            all_chunks.concat(chunk_file(doc))
+          else
+            # Treat as raw text
+            all_chunks.concat(chunk_text(doc))
+          end
+        elsif doc.is_a?(Hash)
+          # If it's a document hash with text and metadata
+          text = doc[:text] || doc["text"]
+          metadata = doc[:metadata] || doc["metadata"] || {}
+          all_chunks.concat(chunk_text(text, metadata))
+        end
+      end
+      
+      all_chunks
+    end
+    
+    def self.semantic_chunker(model: nil)
+      # Future enhancement: Use more sophisticated chunking with semantic boundaries
+      # Could use sentence embeddings to find natural break points
+      Baran::RecursiveCharacterTextSplitter.new(
+        chunk_size: Ragnar::DEFAULT_CHUNK_SIZE,
+        chunk_overlap: Ragnar::DEFAULT_CHUNK_OVERLAP,
+        separators: ["\n\n", "\n", ". ", " ", ""]
+      )
+    end
+  end
+end