radiation 0.0.1

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data/.gitignore

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+*.gem
+*.rbc
+.bundle
+.config
+.yardoc
+Gemfile.lock
+InstalledFiles
+_yardoc
+coverage
+doc/
+lib/bundler/man
+pkg
+rdoc
+spec/reports
+test/tmp
+test/version_tmp
+tmp

data/.rspec

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+#--color

data/.travis.yml

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+rvm:
+  - 1.9

data/CHANGELOG.md

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+## v0.0.1
+
+* initial release

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in radiation.gemspec
+gemspec

data/LICENSE.txt

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+Copyright (c) 2013 Jan Mayer
+
+MIT License
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README.md

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+# Radiation
+
+This gem provides easy access to energies and intensities from the decay of radioactive nuclei. 
+Currently two data sources are accessible: Internal (see bib files in `./data/`) and recommended values 
+by [Laboratoire National Henri Becquerel](http://www.nucleide.org/DDEP_WG/DDEPdata.htm)
+
+## Example Usage
+
+    Radiation::Source.new(nuclide: "Ra-226").energies.collect{|e| e.value}
+
+
+## Planned features
+
+Energy and efficiency calibration for given peaks or spectra.
+
+
+## Installation
+
+Requirement is a (local) ruby with rubygems. Using rvm is recommended
+    
+    $ \curl -L https://get.rvm.io | bash -s stable --ruby=1.9.3
+
+Add this line to your application's Gemfile:
+
+    gem 'radiation'
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install radiation

data/Rakefile

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+require "bundler/gem_tasks"
+require 'rspec/core/rake_task'
+
+RSpec::Core::RakeTask.new(:spec)
+
+task default: :spec

data/data/Eu-152.bib

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+@book{IAEATECDOC619,
+title = "X-ray and gamma-ray standards for detector calibration",
+journal = "IAEA TECDOC",
+volume = "619",
+year = "1991",
+issn = "1011-4289"
+url = "http://www-pub.iaea.org/books/iaeabooks/875/X-ray-and-Gamma-ray-Standards-for-Detector-Calibration",
+author = "A. Lorenz and H.D. Leram"
+}

data/data/Eu-152.csv

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+121.8;0.2837;0.0013
+123.1;0.412;0.005
+244.7;0.0753;0.0004
+344.3;0.2657;0.0011
+411.1;0.02238;0.0001
+444.0;0.03125;0.00014
+778.9;0.1297;0.0006
+867.4;0.04214;0.00025
+964.0;0.1463;0.0006
+1085.9;0.1013;0.0005
+1089.7;0.01731;0.00009
+1112.1;0.1354;0.0006
+1212.9;0.01412;0.00008
+1299.1;0.01626;0.00011
+1408.0;0.2085;0.0009

data/data/Ra-226.bib

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+@article{Delgado2002137,
+title = "Measurements of photon emission probabilities from the decay of 226Ra and daughters ",
+journal = "Applied Radiation and Isotopes ",
+volume = "56",
+number = "1–2",
+pages = "137 - 143",
+year = "2002",
+note = "<ce:title>Proceedings of the Conference on Radionuclide Metrology and its A pplications, ICRM'01</ce:title> ",
+issn = "0969-8043",
+doi = "10.1016/S0969-8043(01)00179-8",
+url = "http://www.sciencedirect.com/science/article/pii/S0969804301001798",
+author = "José U Delgado and Jean Morel and Michel Etcheverry"
+}

data/data/Ra-226.csv

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+186.2;3.502;0.8
+242.0;7.13;0.7
+258.8;0.525;1.0
+274.2;0.472;1.2
+295.2;18.09;0.7
+351.9;35.04;0.7
+388.0;0.690;1.5
+455.0;0.287;2.0
+480.5;0.336;1.4
+487.1;0.431;1.4
+580.3;0.369;1.5
+609.3;44.83;0.7
+665.4;1.506;0.8
+768.4;4.78;0.8
+785.8;1.097;1.1
+806.2;1.250;1.0
+934.1;3.041;0.8
+1120.3;14.66;0.7
+1155.2;1.611;1.2
+1238.1;5.75;0.8
+1281.0;1.411;1.1
+1377.7;3.895;0.8
+1385.3;0.782;1.2
+1401.5;1.311;0.9
+1408.0;2.346;0.8
+1509.2;2.065;1.5
+1661.3;1.063;1.6
+1729.6;2.791;0.8
+1764.5;15.03;0.7
+1847.4;1.994;1.0
+2118.5;1.137;1.0
+2204.1;4.82;0.8
+2293.36;0.298;2.6
+2447.7;1.525;0.9

data/lib/radiation/source/resource/internal.rb

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+# encoding: utf-8
+require 'csv'
+
+class Radiation::Source
+	class Resource
+		private
+		def datasource_internal(nuclide)
+			begin
+				path = File.join(File.dirname(__FILE__), "../../../../data")
+				@data[:nuclide] = nuclide.to_s
+				@data[:lines] = CSV.read("#{path}/#{nuclide}.csv",  {col_sep: ';', converters: :numeric}).collect{|row| {:energy => row[0].pm(0), :intensity => row[1].pm(row[2])} }
+			rescue
+				raise "No Data for #{nuclide}"
+			end
+		end
+	end
+end

data/lib/radiation/source/resource/nucleideorg.rb

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+# encoding: utf-8
+require 'plusminus'
+
+require 'open-uri'
+require 'open-uri/cached'
+require 'tmpdir'
+
+
+class Radiation::Source
+	class Resource
+
+		private
+		def datasource_nukleideorg(nuclide)
+			nuclide = "Ra-226D" if nuclide == "Ra-226" #Ra-226 in equlibrium with daughters
+			begin
+				@data[:nuclide] = nuclide.to_s
+				OpenURI::Cache.cache_path = "#{Dir.tmpdir}/radiation/"
+				uri = open("http://www.nucleide.org/DDEP_WG/Nuclides/#{nuclide}.lara.txt").readlines
+				start = 0
+				uri.each_with_index do |line, lineno|
+					if line.start_with?("------")
+						start = lineno + 2
+						break
+					end
+				end
+				return @data[:lines] = [] if start == 0 or uri.count < start
+				@data[:lines] = uri[start...-1].collect{|line| line.split(' ; ')}.select!{|row| row[4] == "g"}.collect do |row|
+				 {:energy => row[0].to_f.pm(row[1].to_f), :intensity => row[2].to_f.pm(row[3].to_f)} 
+				end
+			rescue
+				raise "No Data for #{nuclide}"
+			end
+		end
+
+	end
+end

data/lib/radiation/source/resource.rb

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+# encoding: utf-8
+require 'radiation/source/resource/internal'
+require 'radiation/source/resource/nucleideorg'
+
+class Radiation::Source
+	class Resource
+		
+		def initialize(resource)
+			@resource = resource
+		end
+
+		def data(nuclide)
+			@data = {}
+			case @resource
+				when "internal" then datasource_internal(nuclide)
+				when "nucleide.org" then datasource_nukleideorg(nuclide)
+				else raise "Unknown Datasource"
+			end
+			return @data
+		end
+
+	end
+end

data/lib/radiation/source.rb

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+# encoding: utf-8
+require 'radiation/source/resource'
+
+class Radiation::Source
+	attr_reader :data
+
+	def initialize(options={})
+		@resource = options.key?(:resource) ? options[:resource].to_s : "internal"
+		fetch(options[:nuclide].to_s) if options.key?(:nuclide)
+	end
+
+	def fetch(nuclide)
+		raise "Nuclide :#{nuclide} is not valid." unless is_nuclide?(nuclide)
+		@data = Resource.new(@resource).data(nuclide)
+	end
+
+	def nuclide
+		@data[:nuclide]
+	end
+
+	def energies
+		@data[:lines].collect{|line| line[:energy]}
+	end
+
+	def intensities
+		@data[:lines].select{|line| line[:intensity] > 0}.collect{|line| {:energy => line[:energy], :intensity => line[:intensity]} }
+	end
+
+	def is_nuclide?(nuclide)
+		!!(nuclide =~ /\A[a-zA-Z]{1,2}-\d{1,3}\z/)
+	end
+end

data/lib/radiation/version.rb

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+module Radiation
+  VERSION = "0.0.1"
+end

data/lib/radiation.rb

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+require "radiation/version"
+require "radiation/source"
+
+module Radiation
+  # Your code goes here...
+end

data/radiation.gemspec

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+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'radiation/version'
+
+Gem::Specification.new do |spec|
+  spec.name          = "radiation"
+  spec.version       = Radiation::VERSION
+  spec.authors       = ["Jan Mayer"]
+  spec.email         = ["jan.mayer@ikp.uni-koeln.de"]
+  spec.description   = %q{Decay Radiation}
+  spec.summary       = %q{This gem provides easy access to energies and intensities from the decay of radioactive nuclei}
+  spec.homepage      = ""
+  spec.license       = "MIT"
+
+  spec.files         = `git ls-files`.split($/)
+  spec.executables   = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
+  spec.test_files    = spec.files.grep(%r{^(test|spec|features)/})
+  spec.require_paths = ["lib"]
+
+  spec.add_dependency "plusminus"
+  spec.add_dependency "open-uri-cached"
+  
+  spec.add_development_dependency "bundler", "~> 1.3"
+  spec.add_development_dependency "rake"
+  spec.add_development_dependency "rspec"
+end

data/samples/get_some_data.rb

@@ -0,0 +1,6 @@
+# encoding: utf-8
+require 'radiation'
+require 'csv'
+
+puts ["E_ɣ", "ΔE_ɣ", "I_ɣ", "ΔI_ɣ"].join("\t")
+puts Radiation::Source.new(nuclide: "Ra-226", resource: "nucleide.org").intensities.collect{|l| [l[:energy].value, l[:energy].delta, l[:intensity].value, l[:intensity].delta].join("\t") }

data/spec/radiation_spec.rb

@@ -0,0 +1,56 @@
+# encoding: utf-8
+require 'spec_helper'
+
+describe Radiation do
+	describe Radiation::Source do
+
+		describe "Features" do
+			name = "Ra-226"
+			source = Radiation::Source.new(nuclide: name)
+	
+	
+			it "provides information about itself" do
+				source.nuclide.should eq(name)
+				#source.reference.should be_a_kind_of(String)
+				#source.halflive.should be_a_kind_of(Plusminus::PlusminusFloat)
+			end
+	
+			it "returns an array with gamma-ray energies for a given source" do
+				source.energies.should be_a_kind_of(Array)
+				source.energies.length.should be > 0
+				source.energies[0].should be_a_kind_of(Plusminus::PlusminusFloat)
+			end
+	
+			it "returns intensities for energies" do
+				source.intensities.should be_a_kind_of(Array)
+				source.intensities.first.should be_a_kind_of(Hash)
+				source.intensities.length.should be > 0
+			end
+
+			it "can access different data resources" do
+				expect { Radiation::Source.new(nuclide: "Ra-226") }.to_not raise_error
+				expect { Radiation::Source.new(nuclide: "Ra-226", resource: "nucleide.org") }.to_not raise_error
+			end
+	
+		end
+
+		describe "Errors" do
+			it "cheks for valid nuclei" do
+				Radiation::Source.new.is_nuclide?("Nukular9000").should be false
+				Radiation::Source.new.is_nuclide?("226Ra-226").should be false
+				Radiation::Source.new.is_nuclide?("Ra-226").should be true
+				Radiation::Source.new.is_nuclide?("C-14").should be true
+				Radiation::Source.new.is_nuclide?("H-1").should be true
+				expect { Radiation::Source.new(nuclide: "Nukular9000") }.to raise_error
+				expect { Radiation::Source.new(nuclide: "Ra-226") }.to_not raise_error
+			end
+
+			it "gives an error if no record is found" do
+				expect { Radiation::Source.new(nuclide: "Ra-15") }.to raise_error
+				expect { Radiation::Source.new(nuclide: "Ra-15", resource: "nucleide.org") }.to raise_error
+			end
+
+		end
+
+	end
+end

data/spec/spec_helper.rb

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+require 'radiation'
+require 'plusminus'

metadata

@@ -0,0 +1,139 @@
+--- !ruby/object:Gem::Specification
+name: radiation
+version: !ruby/object:Gem::Version
+  version: 0.0.1
+platform: ruby
+authors:
+- Jan Mayer
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2013-06-03 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: plusminus
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: open-uri-cached
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '1.3'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '1.3'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+description: Decay Radiation
+email:
+- jan.mayer@ikp.uni-koeln.de
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- .gitignore
+- .rspec
+- .travis.yml
+- CHANGELOG.md
+- Gemfile
+- LICENSE.txt
+- README.md
+- Rakefile
+- data/Eu-152.bib
+- data/Eu-152.csv
+- data/Ra-226.bib
+- data/Ra-226.csv
+- lib/radiation.rb
+- lib/radiation/source.rb
+- lib/radiation/source/resource.rb
+- lib/radiation/source/resource/internal.rb
+- lib/radiation/source/resource/nucleideorg.rb
+- lib/radiation/version.rb
+- radiation.gemspec
+- samples/get_some_data.rb
+- spec/radiation_spec.rb
+- spec/spec_helper.rb
+homepage: ''
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.0.3
+signing_key: 
+specification_version: 4
+summary: This gem provides easy access to energies and intensities from the decay
+  of radioactive nuclei
+test_files:
+- spec/radiation_spec.rb
+- spec/spec_helper.rb