quality-measure-engine 3.0.0.beta.2 → 3.0.0

checksums.yaml

@@ -1,7 +1,7 @@
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data/Gemfile.lock

@@ -1,12 +1,10 @@
 PATH
   remote: .
   specs:
-    quality-measure-engine (3.0.0.beta.2)
+    quality-measure-engine (3.0.0)
       delayed_job_mongoid (~> 2.0.0)
       mongoid (~> 3.1.4)
       moped (~> 1.5.1)
-      nokogiri (~> 1.6.0)
-      rubyXL (~> 1.2.10)
       rubyzip (~> 0.9.9)
 
 GEM
@@ -62,7 +60,6 @@ GEM
       treetop (~> 1.4.8)
     method_source (0.8.2)
     mime-types (1.24)
-    mini_portile (0.5.2)
     minitest (4.7.5)
     mongoid (3.1.6)
       activemodel (~> 3.2)
@@ -71,8 +68,6 @@ GEM
       tzinfo (~> 0.3.29)
     moped (1.5.2)
     multi_json (1.8.2)
-    nokogiri (1.6.0)
-      mini_portile (~> 0.5.0)
     origin (1.1.0)
     polyglot (0.3.3)
     pry (0.9.12.2)
@@ -112,7 +107,6 @@ GEM
     rake (10.1.0)
     rdoc (3.12.2)
       json (~> 1.4)
-    rubyXL (1.2.10)
     rubyzip (0.9.9)
     simplecov (0.7.1)
       multi_json (~> 1.0)

data/lib/qme/quality_measure.rb

@@ -1,6 +1,6 @@
 module QME
   class QualityMeasure
-    
+
     include Mongoid::Document
     store_in collection: 'measures'
 
@@ -13,5 +13,6 @@ module QME
     field :map_fn, type: String
     field :population_ids, type: Hash
     field :parameters, type: Hash, default: {}
+
   end
 end

data/lib/qme/quality_report.rb

@@ -153,36 +153,45 @@ module QME
     end
 
 
-  def patient_cache_matcher
-    match = {'value.measure_id' => self.measure_id, 
-             'value.sub_id'           => self.sub_id,
-             'value.effective_date'   => self.effective_date,
-             'value.test_id'          => test_id,
-             'value.manual_exclusion' => {'$in' => [nil, false]}}
-
-    if(filters)
-      if (filters['races'] && filters['races'].size > 0)
-        match['value.race.code'] = {'$in' => filters['races']}
-      end
-      if (filters['ethnicities'] && filters['ethnicities'].size > 0)
-        match['value.ethnicity.code'] = {'$in' => filters['ethnicities']}
-      end
-      if (filters['genders'] && filters['genders'].size > 0)
-        match['value.gender'] = {'$in' => filters['genders']}
-      end
-      if (filters['providers'] && filters['providers'].size > 0)
-        providers = filters['providers'].map { |pv| Moped::BSON::ObjectId(pv) }
-        match['value.provider_performances.provider_id'] = {'$in' => providers}
-      end
-      if (filters['languages'] && filters['languages'].size > 0)
-        match["value.languages"] = {'$in' => filters['languages']}
+    def patient_cache_matcher
+      match = {'value.measure_id' => self.measure_id, 
+               'value.sub_id'           => self.sub_id,
+               'value.effective_date'   => self.effective_date,
+               'value.test_id'          => test_id,
+               'value.manual_exclusion' => {'$in' => [nil, false]}}
+
+      if(filters)
+        if (filters['races'] && filters['races'].size > 0)
+          match['value.race.code'] = {'$in' => filters['races']}
+        end
+        if (filters['ethnicities'] && filters['ethnicities'].size > 0)
+          match['value.ethnicity.code'] = {'$in' => filters['ethnicities']}
+        end
+        if (filters['genders'] && filters['genders'].size > 0)
+          match['value.gender'] = {'$in' => filters['genders']}
+        end
+        if (filters['providers'] && filters['providers'].size > 0)
+          providers = filters['providers'].map { |pv| Moped::BSON::ObjectId(pv) }
+          match['value.provider_performances.provider_id'] = {'$in' => providers}
+        end
+        if (filters['languages'] && filters['languages'].size > 0)
+          match["value.languages"] = {'$in' => filters['languages']}
+        end
       end
+      match
     end
-    match
-  end
-
 
+    protected
+
+     #In the older version of QME QualityReport was not treated as apersisted object. As
+     # a result anytime you wanted to get the cached results for a calculation you would create
+     # a new QR object which would then go to the db and see if the calculation was performed or
+     # not yet and then return the results.  now that QR objects are persisted you need to go through
+     # the find_or_create by method to ensure that duplicate entries are not being created.  Protecting
+     # this method causes an exception to be thrown for anyone attempting to use this version of QME with the 
+     # sematics of the older version to highlight the issue
+    def initialize(attrs = nil, options = nil)
+      super(attrs, options)
+    end
   end
-
-
 end

data/lib/qme/version.rb

@@ -1,3 +1,3 @@
 module QME
-  VERSION = "3.0.0.beta.2"
+  VERSION = "3.0.0"
 end

data/lib/quality-measure-engine.rb

@@ -3,7 +3,6 @@ require "bundler/setup"
 require 'moped'
 require 'delayed_job_mongoid'
 require 'zip/zip'
-require 'rubyXL'
 
 require "qme/version"
 require 'qme/database_access'

data/quality-measure-engine.gemspec

@@ -21,8 +21,6 @@ Gem::Specification.new do |gem|
   gem.add_dependency 'mongoid', '~> 3.1.4'
   gem.add_dependency 'rubyzip', '~> 0.9.9'
   gem.add_dependency 'delayed_job_mongoid', '~> 2.0.0'
-  gem.add_dependency 'nokogiri', '~> 1.6.0'
-  gem.add_dependency 'rubyXL', '~> 1.2.10'
 
   gem.add_development_dependency "minitest", "~> 4.1.0"
   gem.add_development_dependency "simplecov", "~> 0.7.1"

data/test/unit/qme/map/map_reduce_executor_test.rb

@@ -97,4 +97,16 @@ class MapReduceExecutorTest < MiniTest::Unit::TestCase
     assert_equal 0, QME::PatientCache.count
     assert result[QME::QualityReport::NUMERATOR]
   end
+
+  def test_get_patient_result_with_bundle_id
+    measure_id = "2E679CD2-3FEC-4A75-A75A-61403E5EFEE8"
+    bundle_id = get_db()['bundles'].find.first
+    get_db()['measures'].find('id' => measure_id).update(:$set => {'bundle_id' => bundle_id})
+    executor = QME::MapReduce::Executor.new(measure_id, nil,
+                                            'effective_date' => Time.gm(2011, 1, 15).to_i, 'bundle_id' => bundle_id)
+    result = executor.get_patient_result("12345")
+    assert_equal 0, get_db['patient_cache'].find().count
+    assert result[QME::QualityReport::NUMERATOR]
+  end
+
 end

data/test/unit/qme/quality_measure_test.rb

@@ -1,7 +1,7 @@
 require 'test_helper'
 
 class QualityMeasureTest < MiniTest::Unit::TestCase
-	include QME::DatabaseAccess
+  include QME::DatabaseAccess
   def setup
 
     collection_fixtures(get_db(), 'measures')

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: quality-measure-engine
 version: !ruby/object:Gem::Version
-  version: 3.0.0.beta.2
+  version: 3.0.0
 platform: ruby
 authors:
 - Marc Hadley
@@ -12,7 +12,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-02-28 00:00:00.000000000 Z
+date: 2014-03-25 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: moped
@@ -70,34 +70,6 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: 2.0.0
-- !ruby/object:Gem::Dependency
-  name: nokogiri
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: 1.6.0
-  type: :runtime
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: 1.6.0
-- !ruby/object:Gem::Dependency
-  name: rubyXL
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: 1.2.10
-  type: :runtime
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: 1.2.10
 - !ruby/object:Gem::Dependency
   name: minitest
   requirement: !ruby/object:Gem::Requirement
@@ -207,12 +179,12 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
-  - - ">"
+  - - ">="
     - !ruby/object:Gem::Version
-      version: 1.3.1
+      version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.2.2
+rubygems_version: 2.0.14
 signing_key: 
 specification_version: 4
 summary: This library can run JavaScript based clinical quality measures on a repository