qu-mfeindex 1.1.1 → 1.1.2

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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+  data.tar.gz: 3e091af0bd3f45be7ffe1462be75e9187aadd93f
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data/lib/qu/mfeindex.rb

@@ -47,6 +47,18 @@ module Qu
       File.exist?(db + DB_SQLITE3) and File.exist?(db + DB_JSON) and File.exist?(db + DB_2BIT)
     end
 
+    def create_db_seq_desc(db)
+      info_json = {}
+
+      Bio::FlatFile.new(Bio::FastaFormat, File.open(db)).each do |record|
+        info_json[record.entry_name] = {'id' => record.entry_name, 'desc' => record.desc, 'size' => record.naseq.size}
+      end
+
+      File.open(db + DB_JSON, 'w') do |fh|
+        fh.write(JSON.dump(info_json))
+      end
+    end
+
     def MFEprimerIndex(fasta_file, k = 9, reindex = false)
       return if !reindex and db_indexed?(fasta_file)
 

data/lib/qu/mfeindex/version.rb

@@ -1,5 +1,5 @@
 module Qu
   module Mfeindex
-    VERSION = "1.1.1"
+    VERSION = "1.1.2"
   end
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: qu-mfeindex
 version: !ruby/object:Gem::Version
-  version: 1.1.1
+  version: 1.1.2
 platform: ruby
 authors:
 - Wubin Qu
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-05-26 00:00:00.000000000 Z
+date: 2014-06-01 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: qu-utils