qa 0.9.0 → 0.10.0
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- checksums.yaml +4 -4
- data/README.md +6 -1
- data/lib/qa.rb +1 -0
- data/lib/qa/authorities/local/mysql_table_based_authority.rb +1 -1
- data/lib/qa/authorities/local/table_based_authority.rb +10 -1
- data/lib/qa/services.rb +5 -0
- data/lib/qa/services/rdf_authority_parser.rb +59 -0
- data/lib/qa/version.rb +1 -1
- data/spec/fixtures/lexvo_snippet.rdf +91 -0
- data/spec/lib/services/rdf_authority_parser_spec.rb +27 -0
- data/spec/spec_helper.rb +3 -1
- metadata +22 -2
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: e5ce81b7b841779705a850c38259249eb3d87911
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data.tar.gz: 57de65366200cca987411cf3a0ee8fe9c65320b1
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 4cba3e3e087eeaa9a5b754d53bfa55f6b89033b1b108ea750e999aec6b3c68fb7c4c1ac1a82024c6a77d1e1c5046ea57fc2f4bc818e7d386071d7480c5ba2e4a
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7
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data.tar.gz: b5d1f9021e03bf74c8f7a9a576f95483fa212a51f70a13ac7666de3fb59f4ece0a5f9da57c93f533bbcff9321577c504ebd83e01b17c539372e769b63019e4ce
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data/README.md
CHANGED
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@@ -278,7 +278,12 @@ Results are in JSON.
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278
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The entire list (up to the first 1000 terms) can also be returned using:
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/qa/terms/local/languages/
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-
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+
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#### Loading RDF data into database tables
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You can use the Qa::Services::RDFAuthorityParser to import rdf files into yopur database tables. See the class file, lib/qa/services/rdf_authority_parser.rb, for examples and more information.
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285
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To run the class in your local project you must include `gem 'linkeddata'` into your Gemfile and `require 'linkeddata'` into an initializer or your application.rb
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### Medical Subject Headings (MeSH)
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Provides autocompletion of [MeSH terms](http://www.nlm.nih.gov/mesh/introduction.html). This
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data/lib/qa.rb
CHANGED
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@@ -5,7 +5,7 @@ module Qa
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5
5
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class MysqlTableBasedAuthority < Local::TableBasedAuthority
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6
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def self.check_for_index
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7
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conn = ActiveRecord::Base.connection
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-
if
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8
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if table_or_view_exists? && conn.index_name_exists?(:qa_local_authority_entries, 'index_qa_local_authority_entries_on_lower_label_and_authority', :default).blank?
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9
9
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Rails.logger.error "You've installed mysql local authority tables, but you haven't indexed the lower label. Rails doesn't support functional indexes in migrations, so we tried to execute it for you but something went wrong...\n" \
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'Make sure your table has a lower_label column which is virtuall created and that column is indexed' \
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' ALTER TABLE qa_local_authority_entries ADD lower_label VARCHAR(256) GENERATED ALWAYS AS (lower(label)) VIRTUAL' \
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@@ -2,7 +2,7 @@ module Qa::Authorities
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2
2
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class Local::TableBasedAuthority < Base
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3
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def self.check_for_index
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4
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conn = ActiveRecord::Base.connection
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-
if
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5
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if table_or_view_exists? && !conn.indexes('local_authority_entries').find { |i| i.name == 'index_local_authority_entries_on_lower_label' }
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Rails.logger.error "You've installed local authority tables, but you haven't indexed the label. Rails doesn't support functional indexes in migrations, so you'll have to add this manually:\n" \
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"CREATE INDEX \"index_qa_local_authority_entries_on_lower_label\" ON \"qa_local_authority_entries\" (local_authority_id, lower(label))\n" \
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" OR on Sqlite: \n" \
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@@ -34,6 +34,15 @@ module Qa::Authorities
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34
34
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private
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def self.table_or_view_exists?
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conn = ActiveRecord::Base.connection
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if conn.respond_to?(:data_source_exists?)
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conn.data_source_exists?('qa_local_authority_entries')
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else
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conn.table_exists?('qa_local_authority_entries')
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end
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end
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def base_relation
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Qa::LocalAuthorityEntry.where(local_authority: local_authority)
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end
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data/lib/qa/services.rb
ADDED
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@@ -0,0 +1,59 @@
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# frozen_string_literal: true
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module Qa
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module Services
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# Class to parse downloaded content from rdf sources such as
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# Library of Congress and Lexvo to create LocalAuthorityEntries
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# for a named LocalAuthority.
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#
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# Example calls:
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# RDFAuthorityParser.import_rdf('subjects',['/tmp/authoritiessubjects.nt'])
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10
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# RDFAuthorityParser.import_rdf('languages',['/tmp/lexvo_2013-02-09.rdf'],
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# format: 'rdfxml',
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# predicate: RDF::URI("http://www.w3.org/2008/05/skos#prefLabel"))
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#
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class RDFAuthorityParser
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class << self
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# import the rdf from the sources and store them as entries for the
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# named LocalAuthority
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#
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# @param [String] name The name of the authority to update
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# @param [Array] sources An array of file names to process
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# @param [Hash] opts options for processing
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# @option [opts] :format format of the rdf to parse
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# see RDF::Reader for valid options
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# defaults to :ntripples
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# @option [opts] :predicate label predicate to use for
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# LocalAuthorityEntry.label, which
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# must match a field in the source file(s)
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# defaults to http://www.w3.org/2004/02/skos/core#prefLabel
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def import_rdf(name, sources, opts = {})
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authority = Qa::LocalAuthority.find_or_create_by(name: name)
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format = opts.fetch(:format, :ntriples)
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predicate = opts.fetch(:predicate, ::RDF::Vocab::SKOS.prefLabel)
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sources.each do |uri|
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34
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import_source(authority, format, predicate, uri)
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end
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end
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private
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def import_source(authority, format, predicate, uri)
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::RDF::Reader.open(uri, format: format) do |reader|
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reader.each_statement do |statement|
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parse_statement(statement, predicate, authority)
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end
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end
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end
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48
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def parse_statement(statement, predicate, authority)
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49
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return unless statement.predicate == predicate
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Qa::LocalAuthorityEntry.create(local_authority: authority,
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label: statement.object.to_s,
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uri: statement.subject.to_s)
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rescue ActiveRecord::RecordNotUnique
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Rails.logger.warn("Duplicate record: #{statement.subject}")
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55
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end
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end
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end
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end
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59
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end
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data/lib/qa/version.rb
CHANGED
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@@ -0,0 +1,91 @@
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1
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<?xml version="1.0" encoding="UTF-8" ?>
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<rdf:RDF
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xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
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xmlns:lvont="http://lexvo.org/ontology#"
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xmlns:lexvo="http://lexvo.org/id/"
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xmlns:owl="http://www.w3.org/2002/07/owl#"
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xmlns:skos="http://www.w3.org/2008/05/skos#"
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9
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xmlns:skosxl="http://www.w3.org/2008/05/skos-xl#"
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10
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xmlns:foaf="http://xmlns.com/foaf/0.1/"
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#" >
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<!--
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This data file is a part of
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15
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Lexvo
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http://www.lexvo.org/
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Gerard de Melo, 2008-2013
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License: Creative Commons Attribution-Share Alike 3.0 Unported
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http://creativecommons.org/licenses/by-sa/3.0/
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22
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Portions copyright various contributors (e.g. article authors on Wikipedia).
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For information about the data sources and the respective copyrights,
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please see:
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+
http://www.lexvo.org/linkeddata/sources.html
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-->
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<rdf:Description rdf:about="http://lexvo.org/id/iso639-3/aab">
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<rdf:type rdf:resource="lvont:Language" />
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30
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<rdfs:comment xml:lang="en">Alumu (Alumu–Akpondu, Alumu–Tesu) is a Niger–Congo language spoken by approxi
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31
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mately 7000 people in Nassarawa State, Nigeria. It has lost the nominal affix system characteristic of the
|
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32
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Niger–Congo family.</rdfs:comment>
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<rdfs:label xml:lang="de">Alumu-Tesu</rdfs:label>
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34
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<rdfs:label xml:lang="en">Alumu language</rdfs:label>
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<rdfs:label xml:lang="en">Alumu-Tesu</rdfs:label>
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<rdfs:label xml:lang="hr">Alumu-Tesu jezik</rdfs:label>
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<rdfs:label xml:lang="nl">Alumu-Tesu</rdfs:label>
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<rdfs:label xml:lang="pms">Lenga Alumu-Tesu</rdfs:label>
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<owl:sameAs rdf:resource="http://dbpedia.org/resource/Alumu_language" />
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<owl:sameAs rdf:resource="http://www.mpii.de/yago/resource/Alumu_language" />
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<lvont:iso639P3PCode rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aab</lvont:iso639P3PCode>
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<lvont:label rdf:resource="http://lexvo.org/id/term/deu/Alumu-Tesu" /> <!-- Alumu-Tesu -->
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<lvont:label rdf:resource="http://lexvo.org/id/term/eng/Alumu%20language" /> <!-- Alumu language -->
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<lvont:label rdf:resource="http://lexvo.org/id/term/eng/Alumu-Tesu" /> <!-- Alumu-Tesu -->
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<lvont:label rdf:resource="http://lexvo.org/id/term/hrv/Alumu-Tesu%20jezik" /> <!-- Alumu-Tesu jezik -->
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<lvont:label rdf:resource="http://lexvo.org/id/term/nld/Alumu-Tesu" /> <!-- Alumu-Tesu -->
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<lvont:label rdf:resource="http://lexvo.org/id/term/pms/Lenga%20Alumu-Tesu" /> <!-- Lenga Alumu-Tesu -->
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<skos:prefLabel xml:lang="en">Alumu-Tesu</skos:prefLabel>
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</rdf:Description>
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50
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<rdf:Description rdf:about="http://lexvo.org/id/iso639-3/aac">
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<rdf:type rdf:resource="lvont:Language" />
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<rdfs:comment xml:lang="en">The Ari language is a Papuan language of the Trans–New Guinea family. As of the 2000 census there were only 50 Ari speakers, living in two villages.</rdfs:comment>
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<rdfs:label xml:lang="en">Ari language</rdfs:label>
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54
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<rdfs:label xml:lang="en">Ari</rdfs:label>
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<rdfs:label xml:lang="fr">Ari</rdfs:label>
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56
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<rdfs:label xml:lang="hr">Ari jezik</rdfs:label>
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<rdfs:label xml:lang="nl">Ari</rdfs:label>
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<rdfs:label xml:lang="pms">Lenga Ari</rdfs:label>
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59
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<owl:sameAs rdf:resource="http://dbpedia.org/resource/Ari_language" />
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60
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<owl:sameAs rdf:resource="http://www.lingvoj.org/lang/aac" />
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61
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<owl:sameAs rdf:resource="http://www.mpii.de/yago/resource/Ari_language" />
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62
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<lvont:iso639P3PCode rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aac</lvont:iso639P3PCode>
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63
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<lvont:label rdf:resource="http://lexvo.org/id/term/eng/Ari%20language" /> <!-- Ari language -->
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<lvont:label rdf:resource="http://lexvo.org/id/term/eng/Ari" /> <!-- Ari -->
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<lvont:label rdf:resource="http://lexvo.org/id/term/fra/Ari" /> <!-- Ari -->
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<lvont:label rdf:resource="http://lexvo.org/id/term/hrv/Ari%20jezik" /> <!-- Ari jezik -->
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<lvont:label rdf:resource="http://lexvo.org/id/term/nld/Ari" /> <!-- Ari -->
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68
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<lvont:label rdf:resource="http://lexvo.org/id/term/pms/Lenga%20Ari" /> <!-- Lenga Ari -->
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<skos:prefLabel xml:lang="en">Ari</skos:prefLabel>
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70
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</rdf:Description>
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71
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<rdf:Description rdf:about="http://lexvo.org/id/iso639-3/aac">
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72
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<rdf:type rdf:resource="lvont:Language" />
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73
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<rdfs:comment xml:lang="en">The Ari language is a Papuan language of the Trans–New Guinea family. As of the 2000 census there were only 50 Ari speakers, living in two villages.</rdfs:comment>
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<rdfs:label xml:lang="en">Ari language</rdfs:label>
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75
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<rdfs:label xml:lang="en">Ari</rdfs:label>
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<rdfs:label xml:lang="fr">Ari</rdfs:label>
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<rdfs:label xml:lang="hr">Ari jezik</rdfs:label>
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<rdfs:label xml:lang="nl">Ari</rdfs:label>
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79
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<rdfs:label xml:lang="pms">Lenga Ari</rdfs:label>
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80
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<owl:sameAs rdf:resource="http://dbpedia.org/resource/Ari_language" />
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81
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<owl:sameAs rdf:resource="http://www.lingvoj.org/lang/aac" />
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82
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<owl:sameAs rdf:resource="http://www.mpii.de/yago/resource/Ari_language" />
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83
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<lvont:iso639P3PCode rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aac</lvont:iso639P3PCode>
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84
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+
<lvont:label rdf:resource="http://lexvo.org/id/term/eng/Ari%20language" /> <!-- Ari language -->
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85
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<lvont:label rdf:resource="http://lexvo.org/id/term/eng/Ari" /> <!-- Ari -->
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86
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<lvont:label rdf:resource="http://lexvo.org/id/term/fra/Ari" /> <!-- Ari -->
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87
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<lvont:label rdf:resource="http://lexvo.org/id/term/hrv/Ari%20jezik" /> <!-- Ari jezik -->
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88
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<lvont:label rdf:resource="http://lexvo.org/id/term/nld/Ari" /> <!-- Ari -->
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89
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+
<lvont:label rdf:resource="http://lexvo.org/id/term/pms/Lenga%20Ari" /> <!-- Lenga Ari -->
|
|
90
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+
<skos:prefLabel xml:lang="en">Ari</skos:prefLabel>
|
|
91
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+
</rdf:Description>
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@@ -0,0 +1,27 @@
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1
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# frozen_string_literal: true
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2
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+
require 'spec_helper'
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|
3
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+
|
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4
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+
describe Qa::Services::RDFAuthorityParser do
|
|
5
|
+
let(:source) {[File.join(fixture_path,'lexvo_snippet.rdf')] }
|
|
6
|
+
let(:format) { 'rdfxml' }
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|
7
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+
let(:predicate) { RDF::URI("http://www.w3.org/2008/05/skos#prefLabel") }
|
|
8
|
+
let(:name) { 'language' }
|
|
9
|
+
let(:alum_entry) { Qa::LocalAuthorityEntry.find_by(label: 'Alumu-Tesu') }
|
|
10
|
+
let(:ari_entry) { Qa::LocalAuthorityEntry.find_by(label: 'Ari') }
|
|
11
|
+
|
|
12
|
+
describe "#import_rdf" do
|
|
13
|
+
before do
|
|
14
|
+
blah = Qa::LocalAuthority.find_by_name(name)
|
|
15
|
+
described_class.import_rdf(name, source, format: format, predicate: predicate)
|
|
16
|
+
end
|
|
17
|
+
it "creates the authority and authority entries" do
|
|
18
|
+
expect(Qa::LocalAuthority.count).to eq(1)
|
|
19
|
+
expect(Qa::LocalAuthority.find_by(name: name)).not_to be_nil
|
|
20
|
+
expect(Qa::LocalAuthorityEntry.count).to eq(2)
|
|
21
|
+
expect(alum_entry).not_to be_nil
|
|
22
|
+
expect(alum_entry.uri).to eq('http://lexvo.org/id/iso639-3/aab')
|
|
23
|
+
expect(ari_entry).not_to be_nil
|
|
24
|
+
expect(ari_entry.uri).to eq('http://lexvo.org/id/iso639-3/aac')
|
|
25
|
+
end
|
|
26
|
+
end
|
|
27
|
+
end
|
data/spec/spec_helper.rb
CHANGED
|
@@ -1,4 +1,6 @@
|
|
|
1
1
|
|
|
2
|
+
require 'linkeddata'
|
|
3
|
+
|
|
2
4
|
require 'engine_cart'
|
|
3
5
|
require 'simplecov'
|
|
4
6
|
require 'byebug' unless ENV['TRAVIS']
|
|
@@ -18,7 +20,7 @@ Dir[Rails.root.join("spec/support/**/*.rb")].each { |f| require f }
|
|
|
18
20
|
|
|
19
21
|
RSpec.configure do |config|
|
|
20
22
|
|
|
21
|
-
config.fixture_path =
|
|
23
|
+
config.fixture_path = File.expand_path("../fixtures", __FILE__)
|
|
22
24
|
|
|
23
25
|
config.use_transactional_fixtures = true
|
|
24
26
|
|
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: qa
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.
|
|
4
|
+
version: 0.10.0
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Stephen Anderson
|
|
@@ -15,7 +15,7 @@ authors:
|
|
|
15
15
|
autorequire:
|
|
16
16
|
bindir: bin
|
|
17
17
|
cert_chain: []
|
|
18
|
-
date: 2016-08-
|
|
18
|
+
date: 2016-08-16 00:00:00.000000000 Z
|
|
19
19
|
dependencies:
|
|
20
20
|
- !ruby/object:Gem::Dependency
|
|
21
21
|
name: rails
|
|
@@ -177,6 +177,20 @@ dependencies:
|
|
|
177
177
|
- - ">="
|
|
178
178
|
- !ruby/object:Gem::Version
|
|
179
179
|
version: '0'
|
|
180
|
+
- !ruby/object:Gem::Dependency
|
|
181
|
+
name: linkeddata
|
|
182
|
+
requirement: !ruby/object:Gem::Requirement
|
|
183
|
+
requirements:
|
|
184
|
+
- - ">="
|
|
185
|
+
- !ruby/object:Gem::Version
|
|
186
|
+
version: '0'
|
|
187
|
+
type: :development
|
|
188
|
+
prerelease: false
|
|
189
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
190
|
+
requirements:
|
|
191
|
+
- - ">="
|
|
192
|
+
- !ruby/object:Gem::Version
|
|
193
|
+
version: '0'
|
|
180
194
|
description: Provides a set of uniform RESTful routes to query any controlled vocabulary
|
|
181
195
|
or set of authority terms.
|
|
182
196
|
email:
|
|
@@ -244,6 +258,8 @@ files:
|
|
|
244
258
|
- lib/qa/authorities/web_service_base.rb
|
|
245
259
|
- lib/qa/data/TGN_LANGUAGES.xml
|
|
246
260
|
- lib/qa/engine.rb
|
|
261
|
+
- lib/qa/services.rb
|
|
262
|
+
- lib/qa/services/rdf_authority_parser.rb
|
|
247
263
|
- lib/qa/version.rb
|
|
248
264
|
- lib/tasks/mesh.rake
|
|
249
265
|
- lib/tasks/qa_tasks.rake
|
|
@@ -262,6 +278,7 @@ files:
|
|
|
262
278
|
- spec/fixtures/getty-aat-find-response.json
|
|
263
279
|
- spec/fixtures/getty-tgn-find-response.json
|
|
264
280
|
- spec/fixtures/getty-ulan-find-response.json
|
|
281
|
+
- spec/fixtures/lexvo_snippet.rdf
|
|
265
282
|
- spec/fixtures/loc-names-response.txt
|
|
266
283
|
- spec/fixtures/loc-response.txt
|
|
267
284
|
- spec/fixtures/loc-subject-find-response.txt
|
|
@@ -288,6 +305,7 @@ files:
|
|
|
288
305
|
- spec/lib/authorities/tgnlang_spec.rb
|
|
289
306
|
- spec/lib/authorities_loc_subauthorities.rb
|
|
290
307
|
- spec/lib/mesh_data_parser_spec.rb
|
|
308
|
+
- spec/lib/services/rdf_authority_parser_spec.rb
|
|
291
309
|
- spec/lib/tasks/mesh.rake_spec.rb
|
|
292
310
|
- spec/models/subject_mesh_term_spec.rb
|
|
293
311
|
- spec/routing/route_spec.rb
|
|
@@ -333,6 +351,7 @@ test_files:
|
|
|
333
351
|
- spec/fixtures/getty-aat-find-response.json
|
|
334
352
|
- spec/fixtures/getty-tgn-find-response.json
|
|
335
353
|
- spec/fixtures/getty-ulan-find-response.json
|
|
354
|
+
- spec/fixtures/lexvo_snippet.rdf
|
|
336
355
|
- spec/fixtures/loc-names-response.txt
|
|
337
356
|
- spec/fixtures/loc-response.txt
|
|
338
357
|
- spec/fixtures/loc-subject-find-response.txt
|
|
@@ -359,6 +378,7 @@ test_files:
|
|
|
359
378
|
- spec/lib/authorities/tgnlang_spec.rb
|
|
360
379
|
- spec/lib/authorities_loc_subauthorities.rb
|
|
361
380
|
- spec/lib/mesh_data_parser_spec.rb
|
|
381
|
+
- spec/lib/services/rdf_authority_parser_spec.rb
|
|
362
382
|
- spec/lib/tasks/mesh.rake_spec.rb
|
|
363
383
|
- spec/models/subject_mesh_term_spec.rb
|
|
364
384
|
- spec/routing/route_spec.rb
|