pubmedly 0.2.0

checksums.yaml

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+SHA256:
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+  data.tar.gz: 93feffd74c056084fee11e5bc75307ff9a91b5fc301da2082e36fb180b0da6fb
+SHA512:
+  metadata.gz: e6bd4ef020f8e5f85d44843acd24170ae5d08b519944041b938055584e85fd92c1bb5674e457634eb4348caa7c9a113957fc2c01acaebb5242ca2179b37c55f8
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data/.rspec

@@ -0,0 +1,3 @@
+--format documentation
+--color
+--require spec_helper

data/.rubocop.yml

@@ -0,0 +1,44 @@
+require:
+  - rubocop-rake
+  - rubocop-rspec
+
+AllCops:
+  TargetRubyVersion: 3.0
+  SuggestExtensions: true
+  NewCops: enable
+
+Gemspec/DevelopmentDependencies:
+  EnforcedStyle: gemspec
+
+Layout/FirstHashElementIndentation:
+  Enabled: false
+
+Layout/HashAlignment:
+  EnforcedColonStyle: table
+
+Layout/LineLength:
+  Max: 120
+
+Metrics/ModuleLength:
+  Exclude:
+    - "spec/**/*"
+
+RSpec/ExampleLength:
+  Enabled: False
+
+RSpec/MultipleExpectations:
+  Enabled: False
+
+Style/NumericLiterals:
+  Enabled: false
+
+Style/StringLiterals:
+  Enabled: true
+  EnforcedStyle: double_quotes
+
+Style/StringLiteralsInInterpolation:
+  Enabled: true
+  EnforcedStyle: double_quotes
+
+Style/TrailingCommaInHashLiteral:
+  EnforcedStyleForMultiline: consistent_comma

data/CHANGELOG.md

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+## [Unreleased]
+
+## [0.2.0] - 2023-05-20
+
+- Pubmed and Client classes
+- Updated README
+- Specs
+- Convenience objects in console, @client and @pubmed
+- Configure and obey Rubocop
+
+## [0.1.0] - 2023-04-08
+
+- Initial release

data/CODE_OF_CONDUCT.md

@@ -0,0 +1,84 @@
+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+We as members, contributors, and leaders pledge to make participation in our community a harassment-free experience for everyone, regardless of age, body size, visible or invisible disability, ethnicity, sex characteristics, gender identity and expression, level of experience, education, socio-economic status, nationality, personal appearance, race, religion, or sexual identity and orientation.
+
+We pledge to act and interact in ways that contribute to an open, welcoming, diverse, inclusive, and healthy community.
+
+## Our Standards
+
+Examples of behavior that contributes to a positive environment for our community include:
+
+* Demonstrating empathy and kindness toward other people
+* Being respectful of differing opinions, viewpoints, and experiences
+* Giving and gracefully accepting constructive feedback
+* Accepting responsibility and apologizing to those affected by our mistakes, and learning from the experience
+* Focusing on what is best not just for us as individuals, but for the overall community
+
+Examples of unacceptable behavior include:
+
+* The use of sexualized language or imagery, and sexual attention or
+  advances of any kind
+* Trolling, insulting or derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or email
+  address, without their explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Enforcement Responsibilities
+
+Community leaders are responsible for clarifying and enforcing our standards of acceptable behavior and will take appropriate and fair corrective action in response to any behavior that they deem inappropriate, threatening, offensive, or harmful.
+
+Community leaders have the right and responsibility to remove, edit, or reject comments, commits, code, wiki edits, issues, and other contributions that are not aligned to this Code of Conduct, and will communicate reasons for moderation decisions when appropriate.
+
+## Scope
+
+This Code of Conduct applies within all community spaces, and also applies when an individual is officially representing the community in public spaces. Examples of representing our community include using an official e-mail address, posting via an official social media account, or acting as an appointed representative at an online or offline event.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported to the community leaders responsible for enforcement at robsimpsondev@gmail.com. All complaints will be reviewed and investigated promptly and fairly.
+
+All community leaders are obligated to respect the privacy and security of the reporter of any incident.
+
+## Enforcement Guidelines
+
+Community leaders will follow these Community Impact Guidelines in determining the consequences for any action they deem in violation of this Code of Conduct:
+
+### 1. Correction
+
+**Community Impact**: Use of inappropriate language or other behavior deemed unprofessional or unwelcome in the community.
+
+**Consequence**: A private, written warning from community leaders, providing clarity around the nature of the violation and an explanation of why the behavior was inappropriate. A public apology may be requested.
+
+### 2. Warning
+
+**Community Impact**: A violation through a single incident or series of actions.
+
+**Consequence**: A warning with consequences for continued behavior. No interaction with the people involved, including unsolicited interaction with those enforcing the Code of Conduct, for a specified period of time. This includes avoiding interactions in community spaces as well as external channels like social media. Violating these terms may lead to a temporary or permanent ban.
+
+### 3. Temporary Ban
+
+**Community Impact**: A serious violation of community standards, including sustained inappropriate behavior.
+
+**Consequence**: A temporary ban from any sort of interaction or public communication with the community for a specified period of time. No public or private interaction with the people involved, including unsolicited interaction with those enforcing the Code of Conduct, is allowed during this period. Violating these terms may lead to a permanent ban.
+
+### 4. Permanent Ban
+
+**Community Impact**: Demonstrating a pattern of violation of community standards, including sustained inappropriate behavior,  harassment of an individual, or aggression toward or disparagement of classes of individuals.
+
+**Consequence**: A permanent ban from any sort of public interaction within the community.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 2.0,
+available at https://www.contributor-covenant.org/version/2/0/code_of_conduct.html.
+
+Community Impact Guidelines were inspired by [Mozilla's code of conduct enforcement ladder](https://github.com/mozilla/diversity).
+
+[homepage]: https://www.contributor-covenant.org
+
+For answers to common questions about this code of conduct, see the FAQ at
+https://www.contributor-covenant.org/faq. Translations are available at https://www.contributor-covenant.org/translations.

data/Gemfile

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+# frozen_string_literal: true
+
+source "https://rubygems.org"
+
+# Specify gem dependencies in pubmedly.gemspec
+gemspec

data/Gemfile.lock

@@ -0,0 +1,109 @@
+PATH
+  remote: .
+  specs:
+    pubmedly (0.2.0)
+      nokogiri
+
+GEM
+  remote: https://rubygems.org/
+  specs:
+    addressable (2.8.4)
+      public_suffix (>= 2.0.2, < 6.0)
+    ast (2.4.2)
+    byebug (11.1.3)
+    coderay (1.1.3)
+    crack (0.4.5)
+      rexml
+    diff-lcs (1.5.0)
+    ffi (1.15.5)
+    hashdiff (1.0.1)
+    json (2.6.3)
+    listen (3.8.0)
+      rb-fsevent (~> 0.10, >= 0.10.3)
+      rb-inotify (~> 0.9, >= 0.9.10)
+    method_source (1.0.0)
+    nokogiri (1.14.3-arm64-darwin)
+      racc (~> 1.4)
+    nokogiri (1.14.3-x86_64-linux)
+      racc (~> 1.4)
+    os (1.1.4)
+    parallel (1.22.1)
+    parser (3.2.2.0)
+      ast (~> 2.4.1)
+    pry (0.14.2)
+      coderay (~> 1.1)
+      method_source (~> 1.0)
+    pry-reload (0.3)
+      listen (~> 3.4)
+    public_suffix (5.0.1)
+    racc (1.6.2)
+    rainbow (3.1.1)
+    rake (13.0.6)
+    rb-fsevent (0.11.2)
+    rb-inotify (0.10.1)
+      ffi (~> 1.0)
+    regexp_parser (2.7.0)
+    rexml (3.2.5)
+    rspec (3.12.0)
+      rspec-core (~> 3.12.0)
+      rspec-expectations (~> 3.12.0)
+      rspec-mocks (~> 3.12.0)
+    rspec-core (3.12.1)
+      rspec-support (~> 3.12.0)
+    rspec-expectations (3.12.2)
+      diff-lcs (>= 1.2.0, < 2.0)
+      rspec-support (~> 3.12.0)
+    rspec-mocks (3.12.5)
+      diff-lcs (>= 1.2.0, < 2.0)
+      rspec-support (~> 3.12.0)
+    rspec-support (3.12.0)
+    rubocop (1.49.0)
+      json (~> 2.3)
+      parallel (~> 1.10)
+      parser (>= 3.2.0.0)
+      rainbow (>= 2.2.2, < 4.0)
+      regexp_parser (>= 1.8, < 3.0)
+      rexml (>= 3.2.5, < 4.0)
+      rubocop-ast (>= 1.28.0, < 2.0)
+      ruby-progressbar (~> 1.7)
+      unicode-display_width (>= 2.4.0, < 3.0)
+    rubocop-ast (1.28.0)
+      parser (>= 3.2.1.0)
+    rubocop-capybara (2.18.0)
+      rubocop (~> 1.41)
+    rubocop-factory_bot (2.23.1)
+      rubocop (~> 1.33)
+    rubocop-rake (0.6.0)
+      rubocop (~> 1.0)
+    rubocop-rspec (2.22.0)
+      rubocop (~> 1.33)
+      rubocop-capybara (~> 2.17)
+      rubocop-factory_bot (~> 2.22)
+    ruby-progressbar (1.13.0)
+    unicode-display_width (2.4.2)
+    vcr (6.1.0)
+    webmock (3.18.1)
+      addressable (>= 2.8.0)
+      crack (>= 0.3.2)
+      hashdiff (>= 0.4.0, < 2.0.0)
+
+PLATFORMS
+  arm64-darwin-22
+  x86_64-linux
+
+DEPENDENCIES
+  byebug
+  os
+  pry
+  pry-reload
+  pubmedly!
+  rake
+  rspec
+  rubocop
+  rubocop-rake
+  rubocop-rspec
+  vcr
+  webmock
+
+BUNDLED WITH
+   2.4.10

data/LICENSE.txt

@@ -0,0 +1,21 @@
+The MIT License (MIT)
+
+Copyright (c) 2023 Rob Simpson
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

data/README.md

@@ -0,0 +1,98 @@
+# Pubmedly
+
+**WIP**
+
+This gem provides a `Pubmedly::Client` with methods that get data from the NCBI's [Pubmed database](https://pubmed.ncbi.nlm.nih.gov/) using their [eutils APIs](https://www.ncbi.nlm.nih.gov/books/NBK25499/).
+
+Furthermore, this gem provides a `Pubmedly::Pubmed` class that makes interacting with the eutils APIs easier by parsing the XML responses into useful Ruby objects.
+
+You will need an API key to use this gem; doing this is simple and described with context [here](https://www.ncbi.nlm.nih.gov/books/NBK25497/).
+
+## Installation
+
+Requirements: Ruby.
+
+TODO: Replace `UPDATE_WITH_YOUR_GEM_NAME_PRIOR_TO_RELEASE_TO_RUBYGEMS_ORG` with your gem name right after releasing it to RubyGems.org. Please do not do it earlier due to security reasons. Alternatively, replace this section with instructions to install your gem from git if you don't plan to release to RubyGems.org.
+
+Install the gem and add to the application's Gemfile by executing:
+
+    $ bundle add UPDATE_WITH_YOUR_GEM_NAME_PRIOR_TO_RELEASE_TO_RUBYGEMS_ORG
+
+If bundler is not being used to manage dependencies, install the gem by executing:
+
+    $ gem install UPDATE_WITH_YOUR_GEM_NAME_PRIOR_TO_RELEASE_TO_RUBYGEMS_ORG
+
+## Usage
+
+`Pubmedly::Client` has methods synonymous with the NCBI's eutils API, and the raw web responses are returned with data in XML (default) or JSON.
+
+```ruby
+client = Pubmedly::Client.new("<YOUR_NCBI_API_KEY>")
+#<Pubmedly::Client:0x00000001089768d8 @api_key="<YOUR_NCBI_API_KEY>">
+
+response = client.search("Bifidobacterium longum", retmax: 10)
+#<Net::HTTPOK 200 OK readbody=true>
+
+puts response.body
+#<?xml version="1.0" encoding="UTF-8" ?>
+#<!DOCTYPE eSearchResult PUBLIC "-//NLM//DTD esearch 20060628//EN" "https://eutils.ncbi.nlm.nih.gov/eutils/dtd/20060628/esearch.dtd">
+#<eSearchResult><Count>2321</Count><RetMax>10</RetMax><RetStart>0</RetStart><IdList>
+#<Id>37180228</Id>
+#<Id>37176158</Id>
+#<Id>37175970</Id>
+#<Id>37174650</Id>
+#<Id>37172455</Id>
+# ...
+
+response = client.fetch(37180228)
+#<Net::HTTPOK 200 OK readbody=true>
+
+puts response.body
+#<?xml version="1.0" ?>
+#<!DOCTYPE PubmedArticleSet PUBLIC "-//NLM//DTD PubMedArticle, 1st January 2023//EN" "https://dtd.nlm.nih.gov/ncbi/pubmed/out/pubmed_230101.dtd">
+#<PubmedArticleSet>
+#  <PubmedArticle>
+#    <MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM" IndexingMethod="Automated">
+#      <PMID Version="1">37180228</PMID>
+# ...
+```
+
+`Pubmedly::Pubmed` wraps the NCBI API methods implemented in `Pubmedly::Client` to make the return types more useful.
+
+```ruby
+pubmed = Pubmedly::Pubmed.new("<YOUR_NCBI_API_KEY>")
+#<Pubmedly::Pubmed:0x0000000108a97d20 @client=#<Pubmedly::Client:0x0000000108a97c58 @api_key="<YOUR_NCBI_API_KEY>">>
+
+```
+
+## Development
+
+After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment. for convenience the console will initialize with `@client` and `@pubmed` objects if `NCBI_API_KEY` is defined in your environment.
+
+To install this gem onto your local machine, run `bundle exec rake install`.
+
+## Contributing
+
+Bug reports and pull requests are welcome on GitHub at https://github.com/robsimpsondev/pubmedly. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [code of conduct](https://github.com/robsimpsondev/pubmedly/blob/main/CODE_OF_CONDUCT.md).
+
+With write access to the `main` branch one can release a new version by updating the version number in `version.rb`, and running `bundle exec rake release`, which will create a git tag for the version, push git commits and the created tag, and push the `.gem` file to [rubygems.org](https://rubygems.org).
+
+## Versioning
+
+This project uses [Semantic Versioning](https://semver.org/).
+
+Given a version number MAJOR.MINOR.PATCH, increment the:
+
+ - MAJOR version when you make incompatible API changes
+ - MINOR version when you add functionality in a backward compatible manner
+ - PATCH version when you make backward compatible bug fixes
+ 
+Additional labels for pre-release and build metadata are available as extensions to the MAJOR.MINOR.PATCH format.
+
+## License
+
+The gem is available as open source under the terms of the [MIT License](https://opensource.org/licenses/MIT).
+
+## Code of Conduct
+
+Everyone interacting in the Pubmedly project's codebases, issue trackers, chat rooms and mailing lists is expected to follow the [code of conduct](https://github.com/robsimpsondev/pubmedly/blob/main/CODE_OF_CONDUCT.md).

data/Rakefile

@@ -0,0 +1,12 @@
+# frozen_string_literal: true
+
+require "bundler/gem_tasks"
+require "rspec/core/rake_task"
+
+RSpec::Core::RakeTask.new(:spec)
+
+require "rubocop/rake_task"
+
+RuboCop::RakeTask.new
+
+task default: %i[spec rubocop]

data/lib/pubmedly/client.rb

@@ -0,0 +1,60 @@
+# frozen_string_literal: true
+
+require "net/http"
+
+module Pubmedly
+  # The Client class provides methods for accessing the NCBI's eutils Pubmed API that
+  # return HTTP objects.
+  #
+  # The NCBI eutils API provides access to many databases, but these out of the scope of pubmedly:
+  #   https://www.ncbi.nlm.nih.gov/books/NBK25497/table/chapter2.T._entrez_unique_identifiers_ui/?report=objectonly
+  class Client
+    BASE_URL = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/"
+    NCBI_DB  = "pubmed"
+
+    def initialize(api_key)
+      @api_key = api_key
+    end
+
+    # https://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.ESearch
+    # For guidance on search terms: https://pubmed.ncbi.nlm.nih.gov/help/#how-do-i-search-pubmed
+    # To understand term mapping:   https://pubmed.ncbi.nlm.nih.gov/help/#automatic-term-mapping
+    # List of all field tags:       https://pubmed.ncbi.nlm.nih.gov/help/#search-tags
+    # Parameters for retrieval:     https://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.ESearch
+    # datetype parameter options:   https://dataguide.nlm.nih.gov/eutilities/utilities.html#esearch-date-filter-parameters
+    def search(term, **kwargs)
+      url = URI.parse("#{BASE_URL}esearch.fcgi")
+
+      params = kwargs.merge({
+        db:      NCBI_DB,
+        api_key: @api_key,
+        term:    term,
+      })
+
+      url.query = URI.encode_www_form(params)
+
+      http         = Net::HTTP.new(url.host, url.port)
+      http.use_ssl = true
+
+      http.request(Net::HTTP::Get.new(url.request_uri))
+    end
+
+    # https://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.EFetch
+    def fetch(*ids, **kwargs)
+      url = URI.parse("#{BASE_URL}efetch.fcgi")
+
+      params = kwargs.merge(
+        db:      NCBI_DB,
+        api_key: @api_key,
+        id:      ids.join(",")
+      )
+
+      url.query = URI.encode_www_form(params)
+
+      http         = Net::HTTP.new(url.host, url.port)
+      http.use_ssl = true
+
+      http.request(Net::HTTP::Get.new(url.request_uri))
+    end
+  end
+end

data/lib/pubmedly/parsers/article.rb

@@ -0,0 +1,49 @@
+# frozen_string_literal: true
+
+require "nokogiri"
+require "date"
+
+module Pubmedly
+  module Parsers
+    # The Article class provides methods to access Article data.
+    class Article
+      attr_reader :xml
+
+      def initialize(xml)
+        @xml = xml
+      end
+
+      def to_s
+        "#{authors.first.split(",").first} (#{publication_date.year}) #{title}"
+      end
+
+      def title
+        @xml.xpath(".//ArticleTitle").text
+      end
+
+      def publication_date
+        date_str = @xml.xpath(".//PubDate").text
+        begin
+          date_str.empty? ? "" : Date.parse(date_str)
+        rescue Date::Error
+          Date.strptime(date_str.strip, "%Y")
+        end
+      end
+
+      def abstract
+        @xml.xpath(".//Abstract").text
+      end
+
+      def authors
+        @xml.xpath(".//Author").map do |author|
+          "#{author.xpath(".//LastName").text}, #{author.xpath(".//ForeName").text}"
+        end
+      end
+
+      def pmid
+        id = @xml.xpath(".//PMID").text.to_i
+        id.zero? ? nil : id
+      end
+    end
+  end
+end

data/lib/pubmedly/parsers/response.rb

@@ -0,0 +1,28 @@
+# frozen_string_literal: true
+
+require "nokogiri"
+
+module Pubmedly
+  module Parsers
+    # The Response class parses XML from the NCBI eutils API's responses.
+    class Response
+      def initialize(response)
+        @xml = Nokogiri::XML(response.body)
+      end
+
+      def count
+        @xml.xpath(".//Count")&.text.to_i
+      end
+
+      def ids
+        @xml.xpath(".//Id")&.map(&:text)&.map(&:to_i)&.to_a
+      end
+
+      def articles
+        @xml.xpath(".//PubmedArticle").map do |article_xml|
+          Pubmedly::Parsers::Article.new(article_xml)
+        end
+      end
+    end
+  end
+end

data/lib/pubmedly/pubmed.rb

@@ -0,0 +1,31 @@
+# frozen_string_literal: true
+
+module Pubmedly
+  # The Pubmed class is the main entry point for the gem. It is initialized
+  # with an NCBI API key and exposes methods for searching and fetching
+  # articles.
+  #
+  # @example
+  #   pubmed = Pubmedly::Pubmed.new("my_api_key")
+  #   pubmed.search("cancer")    # returns an array of Pubmed IDs
+  #   pubmed.fetch(37194105)     # returns an array of Articles
+  #   pubmed.articles("cancer")  # returns an array of Articles
+  #
+  class Pubmed
+    def initialize(api_key)
+      @client = Client.new(api_key)
+    end
+
+    def search(...)
+      Parsers::Response.new(@client.search(...)).ids
+    end
+
+    def fetch(...)
+      Parsers::Response.new(@client.fetch(...)).articles
+    end
+
+    def articles(term, **kwargs)
+      fetch(search(term, **kwargs), **kwargs)
+    end
+  end
+end

data/lib/pubmedly/version.rb

@@ -0,0 +1,5 @@
+# frozen_string_literal: true
+
+module Pubmedly
+  VERSION = "0.2.0"
+end

data/lib/pubmedly.rb

@@ -0,0 +1,12 @@
+# frozen_string_literal: true
+
+require_relative "pubmedly/version"
+require_relative "pubmedly/client"
+require_relative "pubmedly/parsers/article"
+require_relative "pubmedly/parsers/response"
+require_relative "pubmedly/pubmed"
+
+module Pubmedly
+  class ApiWarning < StandardError; end
+  # Your code goes here...
+end

metadata

@@ -0,0 +1,230 @@
+--- !ruby/object:Gem::Specification
+name: pubmedly
+version: !ruby/object:Gem::Version
+  version: 0.2.0
+platform: ruby
+authors:
+- Rob Simpson
+autorequire:
+bindir: exe
+cert_chain: []
+date: 2023-05-20 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: nokogiri
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: byebug
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: os
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: pry
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: pry-reload
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rubocop
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rubocop-rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rubocop-rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: vcr
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: webmock
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+description: Search the NIH database for medical research.
+email:
+- robsimpsondev@gmail.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- ".rspec"
+- ".rubocop.yml"
+- CHANGELOG.md
+- CODE_OF_CONDUCT.md
+- Gemfile
+- Gemfile.lock
+- LICENSE.txt
+- README.md
+- Rakefile
+- lib/pubmedly.rb
+- lib/pubmedly/client.rb
+- lib/pubmedly/parsers/article.rb
+- lib/pubmedly/parsers/response.rb
+- lib/pubmedly/pubmed.rb
+- lib/pubmedly/version.rb
+homepage: https://github.com/robsimpsondev/pubmedly
+licenses:
+- MIT
+metadata:
+  rubygems_mfa_required: 'true'
+  homepage_uri: https://github.com/robsimpsondev/pubmedly
+  source_code_uri: https://github.com/robsimpsondev/pubmedly
+  changelog_uri: https://github.com/robsimpsondev/pubmedly/CHANGELOG.md
+post_install_message:
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: 3.0.0
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubygems_version: 3.4.10
+signing_key:
+specification_version: 4
+summary: Ruby client for the NCBI eutils Pubmed API
+test_files: []