protein_maker 0.1.2

checksums.yaml

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+---
+SHA256:
+  metadata.gz: 04fa58016b0d2f0dca901e981ebbc467b0f82ccbb43cfdf18e407b448025394f
+  data.tar.gz: c3c353cc045dc83fbf20e42696ebaa2fdbfa7e1dee373ec2483338f4819d7e53
+SHA512:
+  metadata.gz: 25e0cd65ee59f309191aad242aad39d251d46dbe94d25856923b7591ea03c9600225ea4f7b025a5ae867b03aefb80e17b1d6351088faa772035a5680d6245f14
+  data.tar.gz: 63d49691788a56b28e88001cca97f48ef24445654481fa4b8826b74bc4b370782f3e1302f77d01cca812e4b7529bf3d51ac27379495c4cad7091fa4b2a096abe

data/lib/dna_worker.rb

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+require 'genetic_constants'
+
+module DnaWorker
+    def self.print_complementary_base_pairing(sequence)
+        sequence = sequence.map(&:to_sym)
+
+        mRNA_sequence = sequence.map { |base| GeneticConstants.nitrogenous_base_pairs[base] }
+
+        mRNA_sequence
+    end
+
+    
+    def self.initiate_translation(codon_collection)
+      
+      puts "intiating translation of mRNA sequence"
+      puts ""
+      puts "resulting amino acid sequence..."
+      puts ""
+      
+      codon_collection.each do |codon|
+        if GeneticConstants.genetic_code[codon.join("")].nil?
+          next
+        elsif GeneticConstants.genetic_code[codon.join("")] == "STOP"
+          print "#{GeneticConstants.genetic_code[codon.join("")]}"
+          puts ""
+          puts "=>translation of mRNA sequence terminated.<="
+          break
+        else
+          print "#{GeneticConstants.genetic_code[codon.join("")]}---"
+        end
+      end
+      print "STOP"
+      puts ""
+    end
+  end
+  
+  

data/lib/genetic_constants.rb

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+module GeneticConstants
+    def self.nitrogenous_base_pairs
+      {
+        :A => :U, 
+        :T => :A,
+        :G => :C,
+        :C => :G
+    }
+    end
+  
+    def self.genetic_code
+      {
+  
+        "UUU" => "Phe",
+        "UUC" => "Phe",
+        "UUA" => "Leu",
+        "UUG" => "Leu",
+        "CUU" => "Leu",
+        "CUC" => "Leu",
+        "CUA" => "Leu",
+        "CUG" => "Leu",
+        "AUU" => "Ile",
+        "AUC" => "Ile",
+        "AUA" => "Ile",
+        "AUG" => "Met", 
+        "GUU" => "Val",
+        "GUC" => "Val",
+        "GUA" => "Val",
+        "GUG" => "Val",
+        "UCU" => "Ser",
+        "UCC" => "Ser",
+        "UCA" => "Ser",
+        "UCG" => "Ser",
+        "CCU" => "Pro",
+        "CCC" => "Pro",
+        "CCA" => "Pro",
+        "CCG" => "Pro",
+        "ACU" => "Thr",
+        "ACC" => "Thr",
+        "ACA" => "Thr",
+        "ACG" => "Thr",
+        "GCU" => "Ala",
+        "GCC" => "Ala",
+        "GCA" => "Ala",
+        "GCG" => "Ala",
+        "UAU" => "Tyr",
+        "UAC" => "Tyr",
+        "UAA" => "STOP",
+        "UAG" => "STOP",
+        "CAU" => "His",
+        "CAC" => "His",
+        "CAA" => "Gln",
+        "CAG" => "Gln",
+        "AAU" => "Asn",
+        "AAC" => "Asn",
+        "AAA" => "Lys",
+        "AAG" => "Lys",
+        "GAU" => "Asp",
+        "GAC" => "Asp",
+        "GAA" => "Glu",
+        "GAG" => "Glu",
+        "UGU" => "Cys",
+        "UGC" => "Cys",
+        "UGA" => "STOP",
+        "UGG" => "Trp",
+        "CGU" => "Arg",
+        "CGC" => "Arg",
+        "CGA" => "Arg",
+        "CGG" => "Arg",
+        "AGU" => "Ser",
+        "AGC" => "Ser",
+        "AGA" => "Arg",
+        "AGG" => "Arg",
+        "GGU" => "Gly",
+        "GGC" => "Gly",
+        "GGA" => "Gly",
+        "GGG" => "Gly"
+      }
+    end
+  end

data/lib/protein_maker.rb

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+require 'genetic_constants'
+require 'dna_worker'
+
+
+  class ProteinMaker
+    include GeneticConstants
+    include DnaWorker
+
+    attr_accessor :input_sequence
+    attr_reader :purified_array_sequence, :complementary_mRNA_sequence, :codon_collection, :amino_acid_strand
+
+    def initialize(input_sequence=nil)
+      raise 'No Input Sequence' if input_sequence.nil?
+      
+      @input_sequence = input_sequence
+      @codon_collection = []
+    end
+    
+    def synthesize_amino_acid_strand
+        @purified_array_sequence = @input_sequence.split('')
+        @purified_array_sequence = @purified_array_sequence.map(&:upcase)
+        @purified_array_sequence.select! { |ele| GeneticConstants.nitrogenous_base_pairs.keys.include?(ele.to_sym) }
+
+        @complementary_mRNA_sequence = DnaWorker.print_complementary_base_pairing(@purified_array_sequence)
+        @complementary_mRNA_sequence.join('')
+
+        @complementary_mRNA_sequence.each_slice(3) { |codon| @codon_collection << codon }
+        DnaWorker.initiate_translation(@codon_collection)
+    end
+  end

metadata

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+--- !ruby/object:Gem::Specification
+name: protein_maker
+version: !ruby/object:Gem::Version
+  version: 0.1.2
+platform: ruby
+authors:
+- Paa-Yaw
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2021-11-29 00:00:00.000000000 Z
+dependencies: []
+description: A simple ruby program that reads and synthesizes complementary mRNA sequence,
+  and then translates mRNA sequence to make a chain of amino acids
+email: deepsky_5@live.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- lib/dna_worker.rb
+- lib/genetic_constants.rb
+- lib/protein_maker.rb
+homepage: https://github.com/paa-yaw/ruby-project-protein-synthesis
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubygems_version: 3.3.0.dev
+signing_key: 
+specification_version: 4
+summary: A simple ruby program that reads and synthesizes complementary mRNA sequence,
+  and then translates mRNA sequence to make a chain of amino acids
+test_files: []