pipet 0.0.0

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data/.rspec ADDED
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+ --color
data/.rvmrc ADDED
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+ rvm use --create 1.9.3-p385@pipet
data/Gemfile ADDED
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+ source 'http://rubygems.org'
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+
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+
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+ group :development do
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+ gem 'rspec', '2.14.1'
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+ gem 'bundler', '1.3.5'
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+ gem 'jeweler', '1.8.6'
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+ end
data/Rakefile ADDED
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+ # encoding: utf-8
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+
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+ require 'rubygems'
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+ require 'bundler'
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+ begin
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+ Bundler.setup(:default, :development)
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+ rescue Bundler::BundlerError => e
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+ $stderr.puts e.message
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+ $stderr.puts "Run `bundle install` to install missing gems"
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+ exit e.status_code
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+ end
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+ require 'rake'
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+
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+ require 'jeweler'
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+ Jeweler::Tasks.new do |gem|
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+ # gem is a Gem::Specification... see http://docs.rubygems.org/read/chapter/20 for more options
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+ gem.name = "pipet"
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+ gem.homepage = "http://github.com/audy/pipet"
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+ gem.license = "MIT"
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+ gem.summary = %Q{package manager for bioinformatics databases}
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+ gem.description = %Q{Pipet is a package manager for bioinformatics databases that allows users to easily retrieve databases from their sources using the command line. Pipet also checks for database integrity via checksum}
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+ gem.email = "harekrishna@gmail.com"
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+ gem.authors = ["Austin Richardson"]
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+ # dependencies defined in Gemfile
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+ end
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+ Jeweler::RubygemsDotOrgTasks.new
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+
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+ require 'rspec/core'
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+ require 'rspec/core/rake_task'
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+ RSpec::Core::RakeTask.new(:spec) do |spec|
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+ spec.pattern = FileList['spec/**/*_spec.rb']
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+ end
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+
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+ RSpec::Core::RakeTask.new(:rcov) do |spec|
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+ spec.pattern = 'spec/**/*_spec.rb'
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+ spec.rcov = true
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+ end
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+
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+ task :default => :spec
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+
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+ require 'rdoc/task'
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+ Rake::RDocTask.new do |rdoc|
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+ version = File.exist?('VERSION') ? File.read('VERSION') : ""
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+
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+ rdoc.rdoc_dir = 'rdoc'
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+ rdoc.title = "pipet #{version}"
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+ rdoc.rdoc_files.include('README*')
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+ rdoc.rdoc_files.include('lib/**/*.rb')
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+ end
data/VERSION ADDED
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+ 0.0.0
data/lib/pipet.rb ADDED
File without changes
data/pipet.gemspec ADDED
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+ # Generated by jeweler
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+ # DO NOT EDIT THIS FILE DIRECTLY
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+ # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
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+ # -*- encoding: utf-8 -*-
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+
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+ Gem::Specification.new do |s|
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+ s.name = "pipet"
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+ s.version = "0.0.0"
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+
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+ s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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+ s.authors = ["Austin Richardson"]
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+ s.date = "2013-07-18"
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+ s.description = "Pipet is a package manager for bioinformatics databases that allows users to easily retrieve databases from their sources using the command line. Pipet also checks for database integrity via checksum"
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+ s.email = "harekrishna@gmail.com"
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+ s.files = [
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+ ".rspec",
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+ ".rvmrc",
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+ "Gemfile",
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+ "Rakefile",
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+ "VERSION",
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+ "lib/pipet.rb",
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+ "pipet.gemspec",
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+ "readme.md",
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+ "spec/.pipet_spec.rb.swp",
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+ "spec/pipet_spec.rb",
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+ "spec/spec_helper.rb"
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+ ]
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+ s.homepage = "http://github.com/audy/pipet"
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+ s.licenses = ["MIT"]
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+ s.require_paths = ["lib"]
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+ s.rubygems_version = "1.8.25"
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+ s.summary = "package manager for bioinformatics databases"
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+
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+ if s.respond_to? :specification_version then
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+ s.specification_version = 3
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+
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+ if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
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+ s.add_development_dependency(%q<rspec>, ["= 2.14.1"])
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+ s.add_development_dependency(%q<bundler>, ["= 1.3.5"])
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+ s.add_development_dependency(%q<jeweler>, ["= 1.8.6"])
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+ else
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+ s.add_dependency(%q<rspec>, ["= 2.14.1"])
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+ s.add_dependency(%q<bundler>, ["= 1.3.5"])
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+ s.add_dependency(%q<jeweler>, ["= 1.8.6"])
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+ end
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+ else
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+ s.add_dependency(%q<rspec>, ["= 2.14.1"])
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+ s.add_dependency(%q<bundler>, ["= 1.3.5"])
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+ s.add_dependency(%q<jeweler>, ["= 1.8.6"])
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+ end
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+ end
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+
data/readme.md ADDED
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+ = pipet
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+
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+ Description goes here.
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+
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+ == Contributing to pipet
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+
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+ * Check out the latest master to make sure the feature hasn't been implemented or the bug hasn't been fixed yet.
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+ * Check out the issue tracker to make sure someone already hasn't requested it and/or contributed it.
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+ * Fork the project.
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+ * Start a feature/bugfix branch.
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+ * Commit and push until you are happy with your contribution.
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+ * Make sure to add tests for it. This is important so I don't break it in a future version unintentionally.
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+ * Please try not to mess with the Rakefile, version, or history. If you want to have your own version, or is otherwise necessary, that is fine, but please isolate to its own commit so I can cherry-pick around it.
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+
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+ == Copyright
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+
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+ Copyright (c) 2013 Austin Richardson. See LICENSE.txt for
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+ further details.
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+
Binary file
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+ require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
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+
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+ describe "Pipet" do
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+ it "fails" do
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+ fail "hey buddy, you should probably rename this file and start specing for real"
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+ end
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+ end
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+ $LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
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+ $LOAD_PATH.unshift(File.dirname(__FILE__))
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+
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+ require 'rspec'
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+ require 'pipet'
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+
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+ # Requires supporting files with custom matchers and macros, etc,
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+ # in ./support/ and its subdirectories.
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+ Dir["#{File.dirname(__FILE__)}/support/**/*.rb"].each {|f| require f}
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+
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+ RSpec.configure do |config|
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+
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+ end
metadata ADDED
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+ --- !ruby/object:Gem::Specification
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+ name: pipet
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+ version: !ruby/object:Gem::Version
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+ version: 0.0.0
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+ prerelease:
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+ platform: ruby
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+ authors:
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+ - Austin Richardson
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+ autorequire:
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+ bindir: bin
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+ cert_chain: []
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+ date: 2013-07-18 00:00:00.000000000 Z
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+ dependencies:
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+ - !ruby/object:Gem::Dependency
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+ name: rspec
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+ requirement: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - '='
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+ - !ruby/object:Gem::Version
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+ version: 2.14.1
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - '='
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+ - !ruby/object:Gem::Version
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+ version: 2.14.1
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+ - !ruby/object:Gem::Dependency
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+ name: bundler
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+ requirement: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - '='
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+ - !ruby/object:Gem::Version
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+ version: 1.3.5
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - '='
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+ - !ruby/object:Gem::Version
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+ version: 1.3.5
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+ - !ruby/object:Gem::Dependency
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+ name: jeweler
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+ requirement: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - '='
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+ - !ruby/object:Gem::Version
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+ version: 1.8.6
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - '='
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+ - !ruby/object:Gem::Version
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+ version: 1.8.6
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+ description: Pipet is a package manager for bioinformatics databases that allows users
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+ to easily retrieve databases from their sources using the command line. Pipet also
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+ checks for database integrity via checksum
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+ email: harekrishna@gmail.com
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+ executables: []
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+ extensions: []
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+ extra_rdoc_files: []
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+ files:
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+ - .rspec
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+ - .rvmrc
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+ - Gemfile
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+ - Rakefile
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+ - VERSION
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+ - lib/pipet.rb
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+ - pipet.gemspec
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+ - readme.md
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+ - spec/.pipet_spec.rb.swp
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+ - spec/pipet_spec.rb
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+ - spec/spec_helper.rb
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+ homepage: http://github.com/audy/pipet
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+ licenses:
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+ - MIT
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+ post_install_message:
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+ rdoc_options: []
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+ require_paths:
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+ - lib
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+ required_ruby_version: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ! '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ segments:
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+ - 0
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+ hash: -4135599796043976134
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+ required_rubygems_version: !ruby/object:Gem::Requirement
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+ none: false
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+ requirements:
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+ - - ! '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ requirements: []
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+ rubyforge_project:
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+ rubygems_version: 1.8.25
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+ signing_key:
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+ specification_version: 3
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+ summary: package manager for bioinformatics databases
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+ test_files: []