pets 0.1.3 → 0.1.4
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- checksums.yaml +4 -4
- data/lib/pets/version.rb +1 -1
- data/pets.gemspec +1 -1
- metadata +27 -3
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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|
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1
1
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---
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2
2
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SHA1:
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|
3
|
-
metadata.gz:
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|
4
|
-
data.tar.gz:
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|
3
|
+
metadata.gz: 3f3b413edeba4bc2d9a20b64d41364f5a4db3c4e
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|
4
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+
data.tar.gz: 156cd005a31f16e359cc51c66410a0859a07b629
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|
5
5
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SHA512:
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|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
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|
6
|
+
metadata.gz: 612e9eb2c04e6279c40bf129a706c725a11f4c2007a5909b6fe244120d65cfe5ea7cb805d7bad1abd7a914e34d3d284a6762a5bc647668074d7c049de77b7440
|
|
7
|
+
data.tar.gz: f79a5bf9564c6fdf205517e220bb5ab62b0e02727f990a4694dd2242158d863ef4e1a757461ea6c12f52739f591653ca5630541a2dc5e242ec54e07ff78c93ae
|
data/lib/pets/version.rb
CHANGED
data/pets.gemspec
CHANGED
|
@@ -33,7 +33,7 @@ Gem::Specification.new do |spec|
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|
|
33
33
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`git ls-files -z`.split("\x0").reject { |f| f.match(%r{^(test|spec|features)/}) }
|
|
34
34
|
end
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|
35
35
|
spec.bindir = "bin"
|
|
36
|
-
spec.executables = spec.files.grep(%r{^
|
|
36
|
+
spec.executables = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
|
|
37
37
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spec.require_paths = ["lib"]
|
|
38
38
|
|
|
39
39
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spec.add_development_dependency "bundler", "~> 2.0"
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
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--- !ruby/object:Gem::Specification
|
|
2
2
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name: pets
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.1.
|
|
4
|
+
version: 0.1.4
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Elena Rojano, Pedro Seoane
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2019-
|
|
11
|
+
date: 2019-11-04 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: bundler
|
|
@@ -105,7 +105,31 @@ description: PETS suite includes three different tools. CohortAnalyzer performs
|
|
|
105
105
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of a list of pathological phenotypes observed in a patient.
|
|
106
106
|
email:
|
|
107
107
|
- elenarojano@uma.es, seoanezonjic@uma.es
|
|
108
|
-
executables:
|
|
108
|
+
executables:
|
|
109
|
+
- area_under_curve_pr.rb
|
|
110
|
+
- association_metrics_average.rb
|
|
111
|
+
- coPatReporter.rb
|
|
112
|
+
- console
|
|
113
|
+
- fmeasure_index.rb
|
|
114
|
+
- get_PR_values.rb
|
|
115
|
+
- get_clusters.R
|
|
116
|
+
- get_network_nodes.rb
|
|
117
|
+
- lines.R
|
|
118
|
+
- merge_by_cluster.rb
|
|
119
|
+
- merge_pairs.rb
|
|
120
|
+
- paco_translator.rb
|
|
121
|
+
- phen2reg.rb
|
|
122
|
+
- phen2reg_predictor_check.rb
|
|
123
|
+
- plot_area.R
|
|
124
|
+
- plot_boxplot.R
|
|
125
|
+
- plot_density.R
|
|
126
|
+
- plot_scatterplot.R
|
|
127
|
+
- reg2phen.rb
|
|
128
|
+
- region_to_patients_generator.rb
|
|
129
|
+
- relate_CI_to_association_value.rb
|
|
130
|
+
- setup
|
|
131
|
+
- standardize_scores.R
|
|
132
|
+
- xyplot_graph.R
|
|
109
133
|
extensions: []
|
|
110
134
|
extra_rdoc_files: []
|
|
111
135
|
files:
|