osc_machete_rails 1.3.1 → 2.0.0.pre1
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- checksums.yaml +5 -5
- data/CHANGELOG.md +3 -41
- data/README.md +0 -5
- data/lib/osc_machete_rails/statusable.rb +1 -1
- data/lib/osc_machete_rails/version.rb +1 -1
- data/test/dummy/app/controllers/simulations_controller.rb +2 -10
- data/test/dummy/app/models/simulation.rb +1 -2
- data/test/dummy/app/models/simulation_job.rb +1 -1
- data/test/dummy/bin/bundle +1 -1
- data/test/dummy/bin/rails +1 -1
- data/test/dummy/config/application.rb +12 -12
- data/test/dummy/config/boot.rb +4 -3
- data/test/dummy/config/environment.rb +2 -2
- data/test/dummy/config/environments/development.rb +5 -37
- data/test/dummy/config/environments/production.rb +29 -43
- data/test/dummy/config/environments/test.rb +4 -14
- data/test/dummy/config/initializers/mime_types.rb +1 -0
- data/test/dummy/config/initializers/wrap_parameters.rb +2 -2
- data/test/dummy/config/locales/en.yml +0 -10
- data/test/dummy/db/migrate/20151230193910_create_simulations.rb +1 -1
- data/test/dummy/db/migrate/20151230193911_create_simulation_jobs.rb +1 -1
- data/test/dummy/db/{development.sqlite3 → production.sqlite3} +0 -0
- data/test/dummy/db/schema.rb +16 -14
- data/test/dummy/log/production.log +0 -0
- data/test/dummy/tmp/cache/assets/production/sprockets/0ff4cb4a6c217771a1336b307c51cf4e +0 -0
- data/test/dummy/tmp/cache/assets/production/sprockets/2f5173deea6c795b8fdde723bb4b63af +0 -0
- data/test/dummy/tmp/cache/assets/production/sprockets/57261b7c75c19be33229517e39e47528 +0 -0
- data/test/dummy/tmp/cache/assets/production/sprockets/f7cbd26ba1d28d48de824f0e94586655 +0 -0
- data/test/test_helper.rb +0 -4
- data/test/unit/statusable_test.rb +1 -6
- metadata +62 -443
- data/test/dummy/app/assets/config/manifest.js +0 -3
- data/test/dummy/app/models/application_record.rb +0 -3
- data/test/dummy/bin/setup +0 -36
- data/test/dummy/bin/update +0 -31
- data/test/dummy/bin/yarn +0 -11
- data/test/dummy/config/cable.yml +0 -10
- data/test/dummy/config/initializers/application_controller_renderer.rb +0 -8
- data/test/dummy/config/initializers/assets.rb +0 -14
- data/test/dummy/config/initializers/content_security_policy.rb +0 -25
- data/test/dummy/config/initializers/cookies_serializer.rb +0 -5
- data/test/dummy/config/initializers/new_framework_defaults_5_2.rb +0 -38
- data/test/dummy/config/storage.yml +0 -34
- data/test/dummy/db/test.sqlite3 +0 -0
- data/test/dummy/log/development.log +0 -203
- data/test/dummy/log/test.log +0 -81521
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- data/test/dummy/tmp/cache/assets/sprockets/v4.0.0/-U/-UiBfw_occnrRHYH5aQhHa718gofqkZJOpKEIYScKsM.cache +0 -1
- data/test/dummy/tmp/cache/assets/sprockets/v4.0.0/-v/-vzZTpKRXzW-jXinwE6t0T7RxXG3VamWjnGzd6ysZp8.cache +0 -0
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- data/test/dummy/tmp/cache/assets/sprockets/v4.0.0/yA/yA8t9TIsNsxTouSrIzNi9Ss0M9GK_lD6uaB8xCc5UJw.cache +0 -1
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- data/test/dummy/tmp/cache/bootsnap-load-path-cache +0 -0
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
|
-
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
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2
|
+
SHA1:
|
3
|
+
metadata.gz: 532dd20ce410fdf6ef08f67364f2bc0f3f5ffd68
|
4
|
+
data.tar.gz: 0b2e520c82c4f185e8b70c0a1725b5becf656f64
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 450668a0aebdd9c4691cb29ee7ddd62a337b980db69bc6ed0d40432a74bde44c4976ee4572d7c299b5289591f9dd778d13076f13aac32ff61fd9e6bbe78c0259
|
7
|
+
data.tar.gz: 6e7fe6f48805ac128673610b3bc2eb36d1951087e87069d69c255bbe607d996d5854e40a23de4d396f9c18bfb940de3a2bfec041295f0de0621ab770dd5bc019
|
data/CHANGELOG.md
CHANGED
@@ -4,43 +4,10 @@ All notable changes to this project will be documented in this file.
|
|
4
4
|
This project adheres to [Semantic Versioning](http://semver.org/).
|
5
5
|
|
6
6
|
## [Unreleased]
|
7
|
-
## [1.3.1] - 2020-04-02
|
8
|
-
### Fixed
|
9
|
-
|
10
|
-
- Fixed [#71](https://github.com/OSC/osc_machete_rails/pull/71).
|
11
|
-
|
12
|
-
## [1.3.0] - 2020-01-21
|
13
|
-
|
14
|
-
### Changed
|
15
|
-
|
16
|
-
- dependency on rails has been increased from 4.2 to > 5.
|
17
|
-
- this changed a lot in the test cases, nothing in the actual library.
|
18
|
-
|
19
|
-
## [1.2.2] - 2016-07-26
|
20
|
-
|
21
|
-
### Changed
|
22
|
-
|
23
|
-
- dependency from osc-machete 1.1 to 1.2 which ups the pbs dependency to 2.0
|
24
|
-
|
25
|
-
### Fixed
|
26
|
-
|
27
|
-
- use latest version of osc-machete gem so `Job#host` exists so after submitting a
|
28
|
-
job we save the host to the database
|
29
|
-
|
30
|
-
## [1.2.1] - 2016-07-26
|
31
|
-
|
32
|
-
### Fixed
|
33
|
-
|
34
|
-
- bug where `results_valid?` might not call results validation method
|
35
|
-
|
36
|
-
## [1.2.0] - 2016-06-07
|
37
7
|
|
38
8
|
### Changed
|
39
9
|
|
40
10
|
- remove `AwesimRails` as a dependency
|
41
|
-
- README and spec changes for rubygems release
|
42
|
-
- `Workflow#staging_target_dir` now accepts `dataroot` path keyword argument
|
43
|
-
- change Rails dependency to allow any minor version of Rails 4
|
44
11
|
|
45
12
|
## [1.1.0] - 2016-03-03
|
46
13
|
|
@@ -103,12 +70,7 @@ statusable.rb (from v0.6.3 of osc-machete to latest osc_machete_rails)
|
|
103
70
|
### Removed
|
104
71
|
|
105
72
|
|
106
|
-
[Unreleased]: https://github.com/OSC/osc_machete_rails/compare/v1.
|
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-
[1.
|
108
|
-
[1.
|
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-
[1.2.2]: https://github.com/OSC/osc_machete_rails/compare/v1.2.1...v1.2.2
|
110
|
-
[1.2.1]: https://github.com/OSC/osc_machete_rails/compare/v1.2.0...v1.2.1
|
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|
-
[1.2.0]: https://github.com/OSC/osc_machete_rails/compare/v1.1.0...v1.2.0
|
112
|
-
[1.1.0]: https://github.com/OSC/osc_machete_rails/compare/v1.0.1...v1.1.0
|
113
|
-
[1.0.1]: https://github.com/OSC/osc_machete_rails/compare/v1.0.0...v1.0.1
|
73
|
+
[Unreleased]: https://github.com/AweSim-OSC/osc_machete_rails/compare/v1.1.0...master
|
74
|
+
[1.1.0]: https://github.com/AweSim-OSC/osc_machete_rails/compare/v1.0.1...v1.1.0
|
75
|
+
[1.0.1]: https://github.com/AweSim-OSC/osc_machete_rails/compare/v1.0.0...v1.0.1
|
114
76
|
|
data/README.md
CHANGED
@@ -133,7 +133,7 @@ module OscMacheteRails
|
|
133
133
|
# @return [String] A string representing a validation method name from script_name attr
|
134
134
|
# using ActiveSupport methods
|
135
135
|
def results_validation_method_name
|
136
|
-
File.basename(script_name, ".*").underscore.parameterize(
|
136
|
+
File.basename(script_name, ".*").underscore.parameterize('_') + "_results_valid?"
|
137
137
|
end
|
138
138
|
|
139
139
|
# A hook that can be overidden with custom code
|
@@ -55,20 +55,12 @@ class SimulationsController < ApplicationController
|
|
55
55
|
# DELETE /simulations/1.json
|
56
56
|
def destroy
|
57
57
|
respond_to do |format|
|
58
|
-
|
59
|
-
# in rails 5 doesn't seem to want to actually rescue exceptions in simulation.destroy and do it's
|
60
|
-
# rails magic, but instead they bubble up into the test case. so we force the rescue here
|
61
|
-
# and add it to simulation.errors.
|
62
|
-
begin
|
63
|
-
@simulation.destroy
|
58
|
+
if @simulation.destroy
|
64
59
|
format.html { redirect_to simulations_url, notice: 'Simulation was successfully destroyed.' }
|
65
60
|
format.json { head :no_content }
|
66
|
-
|
67
|
-
rescue PBS::BadhostError => e
|
68
|
-
@simulation.errors.add(:name, :not_implemented, message: e.to_s)
|
61
|
+
else
|
69
62
|
format.html { render :show, status: 500, alert: 'A problem occurred when trying to destroy the simulation.' }
|
70
63
|
format.json { render json: @simulation.errors, status: 500 }
|
71
|
-
next
|
72
64
|
end
|
73
65
|
end
|
74
66
|
end
|
@@ -1,4 +1,4 @@
|
|
1
|
-
class Simulation <
|
1
|
+
class Simulation < ActiveRecord::Base
|
2
2
|
has_many :simulation_jobs, dependent: :destroy
|
3
3
|
has_machete_workflow_of :simulation_jobs
|
4
4
|
|
@@ -23,5 +23,4 @@ class Simulation < ApplicationRecord
|
|
23
23
|
def copy
|
24
24
|
self.dup
|
25
25
|
end
|
26
|
-
|
27
26
|
end
|
data/test/dummy/bin/bundle
CHANGED
data/test/dummy/bin/rails
CHANGED
@@ -1,23 +1,23 @@
|
|
1
|
-
|
1
|
+
require File.expand_path('../boot', __FILE__)
|
2
2
|
|
3
3
|
require 'rails/all'
|
4
4
|
|
5
|
-
# Require the gems listed in Gemfile, including any gems
|
6
|
-
# you've limited to :test, :development, or :production.
|
7
5
|
Bundler.require(*Rails.groups)
|
6
|
+
require "osc_machete_rails"
|
8
7
|
|
9
8
|
module Dummy
|
10
9
|
class Application < Rails::Application
|
11
|
-
# Initialize configuration defaults for originally generated Rails version.
|
12
|
-
config.load_defaults 5.2
|
13
|
-
|
14
10
|
# Settings in config/environments/* take precedence over those specified here.
|
15
|
-
# Application configuration
|
16
|
-
# -- all .rb files in that directory are automatically loaded
|
17
|
-
|
18
|
-
|
11
|
+
# Application configuration should go into files in config/initializers
|
12
|
+
# -- all .rb files in that directory are automatically loaded.
|
13
|
+
|
14
|
+
# Set Time.zone default to the specified zone and make Active Record auto-convert to this zone.
|
15
|
+
# Run "rake -D time" for a list of tasks for finding time zone names. Default is UTC.
|
16
|
+
# config.time_zone = 'Central Time (US & Canada)'
|
19
17
|
|
20
|
-
#
|
21
|
-
config.
|
18
|
+
# The default locale is :en and all translations from config/locales/*.rb,yml are auto loaded.
|
19
|
+
# config.i18n.load_path += Dir[Rails.root.join('my', 'locales', '*.{rb,yml}').to_s]
|
20
|
+
# config.i18n.default_locale = :de
|
22
21
|
end
|
23
22
|
end
|
23
|
+
|
data/test/dummy/config/boot.rb
CHANGED
@@ -1,4 +1,5 @@
|
|
1
|
-
|
1
|
+
# Set up gems listed in the Gemfile.
|
2
|
+
ENV['BUNDLE_GEMFILE'] ||= File.expand_path('../../../../Gemfile', __FILE__)
|
2
3
|
|
3
|
-
require 'bundler/setup'
|
4
|
-
|
4
|
+
require 'bundler/setup' if File.exists?(ENV['BUNDLE_GEMFILE'])
|
5
|
+
$LOAD_PATH.unshift File.expand_path('../../../../lib', __FILE__)
|
@@ -1,4 +1,4 @@
|
|
1
|
-
|
1
|
+
Dummy::Application.configure do
|
2
2
|
# Settings specified here will take precedence over those in config/application.rb.
|
3
3
|
|
4
4
|
# In the development environment your application's code is reloaded on
|
@@ -9,53 +9,21 @@ Rails.application.configure do
|
|
9
9
|
# Do not eager load code on boot.
|
10
10
|
config.eager_load = false
|
11
11
|
|
12
|
-
# Show full error reports.
|
13
|
-
config.consider_all_requests_local
|
14
|
-
|
15
|
-
# Enable/disable caching. By default caching is disabled.
|
16
|
-
# Run rails dev:cache to toggle caching.
|
17
|
-
if Rails.root.join('tmp', 'caching-dev.txt').exist?
|
18
|
-
config.action_controller.perform_caching = true
|
19
|
-
|
20
|
-
config.cache_store = :memory_store
|
21
|
-
config.public_file_server.headers = {
|
22
|
-
'Cache-Control' => "public, max-age=#{2.days.to_i}"
|
23
|
-
}
|
24
|
-
else
|
25
|
-
config.action_controller.perform_caching = false
|
26
|
-
|
27
|
-
config.cache_store = :null_store
|
28
|
-
end
|
29
|
-
|
30
|
-
# Store uploaded files on the local file system (see config/storage.yml for options)
|
31
|
-
config.active_storage.service = :local
|
12
|
+
# Show full error reports and disable caching.
|
13
|
+
config.consider_all_requests_local = true
|
14
|
+
config.action_controller.perform_caching = false
|
32
15
|
|
33
16
|
# Don't care if the mailer can't send.
|
34
17
|
config.action_mailer.raise_delivery_errors = false
|
35
18
|
|
36
|
-
config.action_mailer.perform_caching = false
|
37
|
-
|
38
19
|
# Print deprecation notices to the Rails logger.
|
39
20
|
config.active_support.deprecation = :log
|
40
21
|
|
41
|
-
# Raise an error on page load if there are pending migrations
|
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# Raise an error on page load if there are pending migrations
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config.active_record.migration_error = :page_load
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# Highlight code that triggered database queries in logs.
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config.active_record.verbose_query_logs = true
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-
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# Debug mode disables concatenation and preprocessing of assets.
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# This option may cause significant delays in view rendering with a large
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# number of complex assets.
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config.assets.debug = true
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-
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# Suppress logger output for asset requests.
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config.assets.quiet = true
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-
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# Raises error for missing translations
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# config.action_view.raise_on_missing_translations = true
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-
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# Use an evented file watcher to asynchronously detect changes in source code,
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# routes, locales, etc. This feature depends on the listen gem.
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config.file_watcher = ActiveSupport::EventedFileUpdateChecker
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end
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@@ -1,11 +1,11 @@
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1
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-
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1
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Dummy::Application.configure do
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# Settings specified here will take precedence over those in config/application.rb.
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3
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# Code is not reloaded between requests.
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config.cache_classes = true
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# Eager load code on boot. This eager loads most of Rails and
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# your application in memory, allowing both
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+
# your application in memory, allowing both thread web servers
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# and those relying on copy on write to perform better.
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# Rake tasks automatically ignore this option for performance.
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config.eager_load = true
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@@ -14,13 +14,13 @@ Rails.application.configure do
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config.consider_all_requests_local = false
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config.action_controller.perform_caching = true
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-
#
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-
#
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-
#
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# Enable Rack::Cache to put a simple HTTP cache in front of your application
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# Add `rack-cache` to your Gemfile before enabling this.
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# For large-scale production use, consider using a caching reverse proxy like nginx, varnish or squid.
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# config.action_dispatch.rack_cache = true
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# Disable
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-
|
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-
config.public_file_server.enabled = ENV['RAILS_SERVE_STATIC_FILES'].present?
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# Disable Rails's static asset server (Apache or nginx will already do this).
|
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+
config.serve_static_assets = false
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# Compress JavaScripts and CSS.
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config.assets.js_compressor = :uglifier
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@@ -29,66 +29,52 @@ Rails.application.configure do
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# Do not fallback to assets pipeline if a precompiled asset is missed.
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config.assets.compile = false
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-
#
|
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# Generate digests for assets URLs.
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+
config.assets.digest = true
|
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34
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|
34
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-
#
|
35
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-
|
35
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+
# Version of your assets, change this if you want to expire all your assets.
|
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+
config.assets.version = '1.0'
|
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|
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# Specifies the header that your server uses for sending files.
|
38
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-
# config.action_dispatch.x_sendfile_header =
|
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-
# config.action_dispatch.x_sendfile_header = 'X-Accel-Redirect' # for
|
40
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-
|
41
|
-
# Store uploaded files on the local file system (see config/storage.yml for options)
|
42
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-
config.active_storage.service = :local
|
43
|
-
|
44
|
-
# Mount Action Cable outside main process or domain
|
45
|
-
# config.action_cable.mount_path = nil
|
46
|
-
# config.action_cable.url = 'wss://example.com/cable'
|
47
|
-
# config.action_cable.allowed_request_origins = [ 'http://example.com', /http:\/\/example.*/ ]
|
39
|
+
# config.action_dispatch.x_sendfile_header = "X-Sendfile" # for apache
|
40
|
+
# config.action_dispatch.x_sendfile_header = 'X-Accel-Redirect' # for nginx
|
48
41
|
|
49
42
|
# Force all access to the app over SSL, use Strict-Transport-Security, and use secure cookies.
|
50
43
|
# config.force_ssl = true
|
51
44
|
|
52
|
-
#
|
53
|
-
|
54
|
-
config.log_level = :debug
|
45
|
+
# Set to :debug to see everything in the log.
|
46
|
+
config.log_level = :info
|
55
47
|
|
56
48
|
# Prepend all log lines with the following tags.
|
57
|
-
config.log_tags = [ :
|
49
|
+
# config.log_tags = [ :subdomain, :uuid ]
|
50
|
+
|
51
|
+
# Use a different logger for distributed setups.
|
52
|
+
# config.logger = ActiveSupport::TaggedLogging.new(SyslogLogger.new)
|
58
53
|
|
59
54
|
# Use a different cache store in production.
|
60
55
|
# config.cache_store = :mem_cache_store
|
61
56
|
|
62
|
-
#
|
63
|
-
# config.
|
64
|
-
# config.active_job.queue_name_prefix = "dummy_#{Rails.env}"
|
57
|
+
# Enable serving of images, stylesheets, and JavaScripts from an asset server.
|
58
|
+
# config.action_controller.asset_host = "http://assets.example.com"
|
65
59
|
|
66
|
-
|
60
|
+
# Precompile additional assets.
|
61
|
+
# application.js, application.css, and all non-JS/CSS in app/assets folder are already added.
|
62
|
+
# config.assets.precompile += %w( search.js )
|
67
63
|
|
68
64
|
# Ignore bad email addresses and do not raise email delivery errors.
|
69
65
|
# Set this to true and configure the email server for immediate delivery to raise delivery errors.
|
70
66
|
# config.action_mailer.raise_delivery_errors = false
|
71
67
|
|
72
68
|
# Enable locale fallbacks for I18n (makes lookups for any locale fall back to
|
73
|
-
# the I18n.default_locale when a translation
|
69
|
+
# the I18n.default_locale when a translation can not be found).
|
74
70
|
config.i18n.fallbacks = true
|
75
71
|
|
76
72
|
# Send deprecation notices to registered listeners.
|
77
73
|
config.active_support.deprecation = :notify
|
78
74
|
|
75
|
+
# Disable automatic flushing of the log to improve performance.
|
76
|
+
# config.autoflush_log = false
|
77
|
+
|
79
78
|
# Use default logging formatter so that PID and timestamp are not suppressed.
|
80
79
|
config.log_formatter = ::Logger::Formatter.new
|
81
|
-
|
82
|
-
# Use a different logger for distributed setups.
|
83
|
-
# require 'syslog/logger'
|
84
|
-
# config.logger = ActiveSupport::TaggedLogging.new(Syslog::Logger.new 'app-name')
|
85
|
-
|
86
|
-
if ENV["RAILS_LOG_TO_STDOUT"].present?
|
87
|
-
logger = ActiveSupport::Logger.new(STDOUT)
|
88
|
-
logger.formatter = config.log_formatter
|
89
|
-
config.logger = ActiveSupport::TaggedLogging.new(logger)
|
90
|
-
end
|
91
|
-
|
92
|
-
# Do not dump schema after migrations.
|
93
|
-
config.active_record.dump_schema_after_migration = false
|
94
80
|
end
|
@@ -1,4 +1,4 @@
|
|
1
|
-
|
1
|
+
Dummy::Application.configure do
|
2
2
|
# Settings specified here will take precedence over those in config/application.rb.
|
3
3
|
|
4
4
|
# The test environment is used exclusively to run your application's
|
@@ -12,11 +12,9 @@ Rails.application.configure do
|
|
12
12
|
# preloads Rails for running tests, you may have to set it to true.
|
13
13
|
config.eager_load = false
|
14
14
|
|
15
|
-
# Configure
|
16
|
-
config.
|
17
|
-
config.
|
18
|
-
'Cache-Control' => "public, max-age=#{1.hour.to_i}"
|
19
|
-
}
|
15
|
+
# Configure static asset server for tests with Cache-Control for performance.
|
16
|
+
config.serve_static_assets = true
|
17
|
+
config.static_cache_control = "public, max-age=3600"
|
20
18
|
|
21
19
|
# Show full error reports and disable caching.
|
22
20
|
config.consider_all_requests_local = true
|
@@ -28,11 +26,6 @@ Rails.application.configure do
|
|
28
26
|
# Disable request forgery protection in test environment.
|
29
27
|
config.action_controller.allow_forgery_protection = false
|
30
28
|
|
31
|
-
# Store uploaded files on the local file system in a temporary directory
|
32
|
-
config.active_storage.service = :test
|
33
|
-
|
34
|
-
config.action_mailer.perform_caching = false
|
35
|
-
|
36
29
|
# Tell Action Mailer not to deliver emails to the real world.
|
37
30
|
# The :test delivery method accumulates sent emails in the
|
38
31
|
# ActionMailer::Base.deliveries array.
|
@@ -40,7 +33,4 @@ Rails.application.configure do
|
|
40
33
|
|
41
34
|
# Print deprecation notices to the stderr.
|
42
35
|
config.active_support.deprecation = :stderr
|
43
|
-
|
44
|
-
# Raises error for missing translations
|
45
|
-
# config.action_view.raise_on_missing_translations = true
|
46
36
|
end
|
@@ -5,10 +5,10 @@
|
|
5
5
|
|
6
6
|
# Enable parameter wrapping for JSON. You can disable this by setting :format to an empty array.
|
7
7
|
ActiveSupport.on_load(:action_controller) do
|
8
|
-
wrap_parameters format: [:json]
|
8
|
+
wrap_parameters format: [:json] if respond_to?(:wrap_parameters)
|
9
9
|
end
|
10
10
|
|
11
11
|
# To enable root element in JSON for ActiveRecord objects.
|
12
12
|
# ActiveSupport.on_load(:active_record) do
|
13
|
-
#
|
13
|
+
# self.include_root_in_json = true
|
14
14
|
# end
|