orf_finder 0.1.6 → 0.1.7
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- checksums.yaml +4 -4
- data/lib/orf.rb +2 -1
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 6b571260f3399603182bc3aaa82c992b873814a3
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4
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data.tar.gz: 1f78452c8f2b7790d0dcac50f082c538d4b9e7b5
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 807e947a451efafb347f58aff5e69338d09f0ae1029e5995af93771f2f908970257bd7dbacb319c998fbfdf950a09395f6115d592cc4402713a4900dea1a5590
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7
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data.tar.gz: 434ea3e354678eb4f7bcd8ae2201b84a30cc39770d5b1350082ae23e39c3dbbcc3bc33cd027b693dba1892f66b960fb9daa6615d650f2e2077b9d8159d7df796
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data/lib/orf.rb
CHANGED
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@@ -134,7 +134,7 @@ class ORF
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# run find method if search has not been done
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find if @orf.nil?
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#
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-
res_nt = { frame1: '', frame2: '', frame3: '' }
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+
res_nt = { frame1: [''], frame2: [''], frame3: [''] }
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res_aa = res_nt.clone
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# if @orf is empty then no point in continuing
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return res_nt if @orf.nil? || @orf.size == 0
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@@ -143,6 +143,7 @@ class ORF
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res_nt[key] = val[:longest].collect do |el|
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get_range(el)
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end
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+
res_nt[key] = [Bio::Sequence::NA.new('')] if res_nt[key].empty?
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end
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@res_nt = res_nt
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# translate to aa sequence
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