openseek-api 0.9.1

checksums.yaml

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+---
+SHA1:
+  metadata.gz: 9d09a04d182af1ff95a8bfeeac27b0ce337ce951
+  data.tar.gz: 1f97c0b533e95d4c33b65a69583294f4c546960c
+SHA512:
+  metadata.gz: 9cf6b345c70e1434fa35611f7dfbfee696c0a67e879f7c7b57338400fe10a80301fede9fb0022ddb5f35b6b04642e161c61bfee3c76b951c964a6799ea3b9966
+  data.tar.gz: b21e81c4a38ce206c886de149aaaa3a33a7eab0671b64e68ed0318d98ff649e4f2a9392b246607e0cab2870bd0ed78b26e46c419a964cbd1378c2e68521cf905

data/.coveralls.yml

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+service_name: travis-ci

data/.gitignore

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+*.rbc
+capybara-*.html
+.rspec
+/log
+/tmp
+/db/*.sqlite3
+/public/system
+/coverage/
+/test/coverage/
+/spec/tmp
+**.orig
+rerun.txt
+pickle-email-*.html
+.idea/
+
+# TODO Comment out these rules if you are OK with secrets being uploaded to the repo
+config/initializers/secret_token.rb
+config/secrets.yml
+
+## Environment normalisation:
+/.bundle
+/vendor/bundle
+
+# these should all be checked in to normalise the environment:
+# Gemfile.lock, .ruby-version, .ruby-gemset
+
+# unless supporting rvm < 1.11.0 or doing something fancy, ignore this:
+.rvmrc
+
+# if using bower-rails ignore default bower_components path bower.json files
+/vendor/assets/bower_components
+*.bowerrc
+bower.json
+test/tmp

data/.ruby-gemset

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+openbis-api-gem

data/.ruby-version

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+ruby-2.1.9

data/.travis.yml

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+language: ruby
+
+sudo: false
+
+cache: bundler
+
+rvm:
+  - 2.1.9
+
+jdk:
+  - oraclejdk8
+  - oraclejdk7
+  - openjdk7
+
+script:
+  - bundle exec rake test
+
+notifications:
+  slack:
+    secure: fK3kbDHg/kwFCjxhFkg0wkOcwXoFwkfJJdRFwZQtnMDkY4yHNtr9SWIHWOiI9OceNgWLeHwvvm/7737WBWnTf4RF3mn0/D9xYtOn+DfV2gb1xXVjDb33oBQWrFN8P1x4xFNOMw38LQ46NYvsv6bfPmZRJpKuvHPVJUsBCINx14w=

data/Gemfile

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+source "https://rubygems.org"
+
+# Specify your gem's dependencies in openseek-api-gem.gemspec
+gemspec

data/Gemfile.lock

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+PATH
+  remote: .
+  specs:
+    openseek-api (0.9.1)
+      cocaine
+
+GEM
+  remote: https://rubygems.org/
+  specs:
+    addressable (2.5.0)
+      public_suffix (~> 2.0, >= 2.0.2)
+    ast (2.3.0)
+    axiom-types (0.1.1)
+      descendants_tracker (~> 0.0.4)
+      ice_nine (~> 0.11.0)
+      thread_safe (~> 0.3, >= 0.3.1)
+    climate_control (0.1.0)
+    cocaine (0.5.8)
+      climate_control (>= 0.0.3, < 1.0)
+    codeclimate-engine-rb (0.4.0)
+      virtus (~> 1.0)
+    coercible (1.0.0)
+      descendants_tracker (~> 0.0.1)
+    coveralls (0.8.19)
+      json (>= 1.8, < 3)
+      simplecov (~> 0.12.0)
+      term-ansicolor (~> 1.3)
+      thor (~> 0.19.1)
+      tins (~> 1.6)
+    descendants_tracker (0.0.4)
+      thread_safe (~> 0.3, >= 0.3.1)
+    docile (1.1.5)
+    equalizer (0.0.11)
+    erubis (2.7.0)
+    flay (2.8.1)
+      erubis (~> 2.7.0)
+      path_expander (~> 1.0)
+      ruby_parser (~> 3.0)
+      sexp_processor (~> 4.0)
+    flog (4.6.1)
+      path_expander (~> 1.0)
+      ruby_parser (~> 3.1, > 3.1.0)
+      sexp_processor (~> 4.8)
+    ice_nine (0.11.2)
+    json (2.0.3)
+    launchy (2.4.3)
+      addressable (~> 2.3)
+    parser (2.3.3.1)
+      ast (~> 2.2)
+    path_expander (1.0.1)
+    powerpack (0.1.1)
+    public_suffix (2.0.5)
+    rainbow (2.2.1)
+    rake (10.4.2)
+    reek (4.5.6)
+      codeclimate-engine-rb (~> 0.4.0)
+      parser (>= 2.3.1.2, < 2.5)
+      rainbow (~> 2.0)
+    rubocop (0.47.1)
+      parser (>= 2.3.3.1, < 3.0)
+      powerpack (~> 0.1)
+      rainbow (>= 1.99.1, < 3.0)
+      ruby-progressbar (~> 1.7)
+      unicode-display_width (~> 1.0, >= 1.0.1)
+    ruby-progressbar (1.8.1)
+    ruby_parser (3.8.4)
+      sexp_processor (~> 4.1)
+    rubycritic (3.1.3)
+      flay (~> 2.8)
+      flog (~> 4.4)
+      launchy (= 2.4.3)
+      parser (= 2.3.3.1)
+      rainbow (~> 2.1)
+      reek (~> 4.4)
+      ruby_parser (~> 3.8)
+      virtus (~> 1.0)
+    sexp_processor (4.8.0)
+    simplecov (0.12.0)
+      docile (~> 1.1.0)
+      json (>= 1.8, < 3)
+      simplecov-html (~> 0.10.0)
+    simplecov-html (0.10.0)
+    term-ansicolor (1.4.0)
+      tins (~> 1.0)
+    thor (0.19.4)
+    thread_safe (0.3.6)
+    tins (1.13.2)
+    unicode-display_width (1.1.3)
+    virtus (1.0.5)
+      axiom-types (~> 0.1)
+      coercible (~> 1.0)
+      descendants_tracker (~> 0.0, >= 0.0.3)
+      equalizer (~> 0.0, >= 0.0.9)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  coveralls
+  openseek-api!
+  rake (~> 10.0)
+  rubocop
+  rubycritic
+
+BUNDLED WITH
+   1.13.6

data/LICENSE

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+Copyright (c) 2015, FAIRdom
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice,
+  this list of conditions and the following disclaimer in the documentation
+  and/or other materials provided with the distribution.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+

data/README.md

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+[![Build Status](https://travis-ci.org/FAIRdom/openseek-api-gem.png?branch=master)](https://travis-ci.org/FAIRdom/openseek-api-gem)
+
+[![Coverage Status](https://coveralls.io/repos/github/FAIRdom/openseek-api/badge.svg)](https://coveralls.io/github/FAIRdom/openseek-api)
+
+[![Code Climate](https://codeclimate.com/github/FAIRdom/openseek-api-gem/badges/gpa.svg)](https://codeclimate.com/github/FAIRdom/openseek-api-gem)
+
+## Installation
+
+Java 1.8 (JRE) is required.
+
+  gem "openseek-api-gem", :git=>"https://github.com/FAIRdom/openseek-api-gem.git"
+
+## Usage
+
+*   Use to query entities in Openbis, filtered on a property with a defined property value. 
+*   Entity type is for example Experiment, Sample, DataSet.
+*   Property is normally the SEEK_ID, which is used to map Openbis entity with SEEK entity.
+
+    include Fairdom::OpenbisApi
+    
+    instance = Fairdom::OpenbisApi::Query.new(username, password, endpoint)
+    
+    json_result = instance.query(type, property, property_value)

data/Rakefile

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+require "bundler/gem_tasks"
+require 'rake'
+require 'rake/testtask'
+
+Rake::TestTask.new do |t|
+  t.test_files = FileList['test/*_test.rb']
+end
+
+task :default => :test

data/lib/fairdom/openbis_api/application_server_query.rb

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+module Fairdom
+  module OpenbisApi
+    class ApplicationServerQuery < OpenbisQuery
+      attr_reader :as_endpoint
+
+      def initialize(as_endpoint, token)
+        super(token)
+        @as_endpoint = as_endpoint
+      end
+
+      def root_command_options
+        " -endpoints {%as%:%#{as_endpoint}%\,%sessionToken%:%#{token}%}"
+      end
+    end
+  end
+end

data/lib/fairdom/openbis_api/authentication.rb

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+module Fairdom
+  module OpenbisApi
+    class Authentication < OpenbisQuery
+      attr_reader :as_endpoint, :username, :password
+
+      def initialize(username, password, as_endpoint)
+        @username = username
+        @password = password
+        @as_endpoint = as_endpoint
+      end
+
+      def login
+        execute []
+      end
+
+      def execute_command(_options)
+        java_root_command
+      end
+
+      def root_command_options
+        " -account {%username%:%#{username}%\,%password%:%#{password}%} -endpoints {%as%:%#{as_endpoint}%}"
+      end
+    end
+  end
+end

data/lib/fairdom/openbis_api/data_store_download.rb

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+module Fairdom
+  module OpenbisApi
+    class DataStoreDownload < DataStoreQuery
+      def download(options)
+        execute(options)
+      end
+
+      def command_option_key
+        'download'
+      end
+    end
+  end
+end

data/lib/fairdom/openbis_api/data_store_query.rb

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+
+
+module Fairdom
+  module OpenbisApi
+    class DataStoreQuery < OpenbisQuery
+      attr_reader :dss_endpoint
+
+      def initialize(dss_endpoint, token)
+        super(token)
+        @dss_endpoint = dss_endpoint
+      end
+
+      def root_command_options
+        " -endpoints {%dss%:%#{dss_endpoint}%\,%sessionToken%:%#{token}%}"
+      end
+    end
+  end
+end

data/lib/fairdom/openbis_api/java_execution.rb

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+require 'cocaine'
+require 'json'
+
+module Fairdom
+  module OpenbisApi
+    class JavaExecution
+      attr_reader :query_object
+
+      def initialize(query_object)
+        @query_object = query_object
+      end
+
+      def execute(options)
+        command = execute_command(options)
+        output = Cocaine::CommandLine.new(command).run
+        JSON.parse(output.strip)
+      rescue Cocaine::ExitStatusError => exception
+        raise OpenbisQueryException, exception.message
+      end
+
+      private
+
+      def execute_command(options)
+        "#{java_root_command} -#{query_object.command_option_key} {#{command_from_options(options)}}"
+      end
+
+      def command_from_options(options)
+        options.collect do |key, value|
+          "%#{key}%:%#{value.tr(' ', '+')}%"
+        end.join("\,")
+      end
+
+      def java_root_command
+        "java -jar #{jar_path} #{query_object.root_command_options}"
+      end
+
+      def jar_path
+        File.join(File.dirname(__dir__), "../../jars/#{jar_file}")
+      end
+
+      def jar_file
+        "openseek-api-#{Fairdom::OpenbisApi::JAR_VERSION}.jar"
+      end
+    end
+  end
+end

data/lib/fairdom/openbis_api/openbis_query.rb

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+require 'fairdom/openbis_api/java_execution'
+
+module Fairdom
+  module OpenbisApi
+    class OpenbisQuery
+      attr_reader :token
+
+      def initialize(token)
+        @token = token
+      end
+
+      def query(options)
+        execute(options)
+      end
+
+      def command_option_key
+        'query'
+      end
+
+      private
+
+      def execute(options)
+        JavaExecution.new(self).execute(options)
+      end
+    end
+  end
+end

data/lib/fairdom/openbis_api/openbis_query_exception.rb

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+module Fairdom
+  module OpenbisApi
+    class OpenbisQueryException < RuntimeError; end
+  end
+end

data/lib/fairdom/openbis_api/versions.rb

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+module Fairdom
+  module OpenbisApi
+    VERSION = '0.9.1'.freeze
+    JAR_VERSION = '0.9'.freeze
+  end
+end

data/lib/openseek-api-gem.rb

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+require 'rubygems'
+require 'bundler/setup'
+
+require 'fairdom/openbis_api/versions'
+require 'fairdom/openbis_api/openbis_query'
+require 'fairdom/openbis_api/openbis_query_exception'
+
+require 'fairdom/openbis_api/authentication'
+
+require 'fairdom/openbis_api/application_server_query'
+require 'fairdom/openbis_api/data_store_query'
+require 'fairdom/openbis_api/data_store_download'

data/openseek-api-gem.gemspec

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+# -*- encoding: utf-8 -*-
+$:.push File.expand_path("../lib", __FILE__)
+require 'fairdom/openbis_api/versions'
+
+Gem::Specification.new do |s|
+  s.name        = "openseek-api"
+  s.version     = Fairdom::OpenbisApi::VERSION
+  s.authors     = ["quyen"]
+  s.email       = ["thucquyendn@gmail.com"]
+  s.homepage    = ""
+  s.summary     = %q{ruby gem to talk to openbis-api java}
+  s.description = %q{ruby gem to talk to openbis-api java}
+
+  s.files         = `git ls-files`.split("\n")
+  s.test_files    = `git ls-files -- {test,spec,features}/*`.split("\n")
+  s.executables   = `git ls-files -- bin/*`.split("\n").map{ |f| File.basename(f) }
+  s.require_paths = ["lib"]
+
+  # specify any dependencies here; for example:
+  s.add_development_dependency("coveralls", ['>= 0'])
+  s.add_development_dependency('rubocop', ['>= 0'])
+  s.add_development_dependency('rubycritic', ['>= 0'])
+  s.add_development_dependency("rake",['~> 10.0'])
+
+  s.add_dependency('cocaine', ['>= 0'])
+
+end

data/test/application_query_test.rb

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+ENV['RAILS_ENV'] ||= 'test'
+require 'coveralls'
+Coveralls.wear!
+
+require 'test/unit'
+require 'openseek-api-gem'
+
+class ApplicationServerQueryTest < Test::Unit::TestCase
+  include Fairdom::OpenbisApi
+
+  def setup
+    @as_endpoint = 'https://openbis-api.fair-dom.org/openbis/openbis'
+    username = 'apiuser'
+    password = 'apiuser'
+    @token = Authentication.new(username, password, @as_endpoint).login['token']
+
+    @options = { entityType: 'Experiment', queryType: 'PROPERTY', property: 'SEEK_STUDY_ID', propertyValue: 'Study_1' }
+  end
+
+  def test_query_property
+    instance = ApplicationServerQuery.new(@as_endpoint, @token)
+    result = instance.query(@options)
+    experiments = result['experiments']
+    refute experiments.empty?
+  end
+
+  def test_query_for_spaces
+    @options = { entityType: 'Space', queryType: 'ATTRIBUTE', attribute: 'PermID', attributeValue: '' }
+    instance = ApplicationServerQuery.new(@as_endpoint, @token)
+    result = instance.query(@options)
+    spaces = result['spaces']
+    refute spaces.empty?
+    assert_equal 2, spaces.count
+    space = spaces[0]
+    assert_equal 'API-SPACE', space['code']
+    assert_equal 'use for testing openbis api integration', space['description'].strip
+    experiments = space['experiments']
+    assert_equal 1, experiments.size
+    assert_equal ['20151216143716562-2'], experiments
+
+    projects = space['projects']
+    assert_equal ['20151216135152196-1'], projects
+
+    datasets = space['datasets']
+    assert_equal 8, datasets.size
+    assert_includes datasets, '20160210130359377-22'
+
+    space = spaces[1]
+    assert_equal 'DEFAULT', space['code']
+    assert_nil space['description']
+  end
+
+  def test_query_property_no_result
+    instance = ApplicationServerQuery.new(@as_endpoint, @token)
+    @options[:propertyValue] = 'Some_value'
+    result = instance.query(@options)
+    assert result.empty?
+  end
+
+  def test_unrecognized_type
+    instance = ApplicationServerQuery.new(@as_endpoint, @token)
+    invalid_type = 'SomeType'
+    @options[:entityType] = 'Some_value'
+    assert_raise OpenbisQueryException do
+      instance.query(@options)
+    end
+  end
+
+  def test_empty_property
+    instance = ApplicationServerQuery.new(@as_endpoint, @token)
+    @options[:property] = ''
+    result = instance.query(@options)
+    assert result.empty?
+  end
+
+  def test_any_property
+    instance = ApplicationServerQuery.new(@as_endpoint, @token)
+    @options[:property] = 'any_property'
+    result = instance.query(@options)
+    assert result.empty?
+  end
+
+  def test_query_perm_id_attribute
+    instance = ApplicationServerQuery.new(@as_endpoint, @token)
+    @options[:queryType] = 'ATTRIBUTE'
+    @options[:attribute] = 'permId'
+    @options[:attributeValue] = '20151216143716562-2'
+    result = instance.query(@options)
+    experiments = result['experiments']
+    refute experiments.empty?
+  end
+
+  def test_query_multiple_perm_id_attribute_values
+    instance = ApplicationServerQuery.new(@as_endpoint, @token)
+    @options[:queryType] = 'ATTRIBUTE'
+    @options[:attribute] = 'permId'
+    @options[:attributeValue] = '20151216112932823-1,20151216143716562-2'
+    result = instance.query(@options)
+    experiments = result['experiments']
+    refute experiments.empty?
+  end
+
+  def test_query_all_permid
+    instance = ApplicationServerQuery.new(@as_endpoint, @token)
+    @options[:queryType] = 'ATTRIBUTE'
+    @options[:attribute] = 'PermID'
+    @options[:attributeValue] = ''
+    result = instance.query(@options)
+    refute result['experiments'].empty?
+  end
+end

data/test/authentication_test.rb

@@ -0,0 +1,30 @@
+ENV['RAILS_ENV'] ||= 'test'
+require 'coveralls'
+Coveralls.wear!
+
+require 'test/unit'
+require 'openseek-api-gem'
+
+class AuthenticationTest < Test::Unit::TestCase
+  include Fairdom::OpenbisApi
+
+  def setup
+    @as_endpoint = 'https://openbis-api.fair-dom.org/openbis/openbis'
+    @username = 'apiuser'
+    @password = 'apiuser'
+  end
+
+  def test_successful_authentication
+    au = Authentication.new(@username, @password, @as_endpoint)
+    session_token = au.login
+    assert_not_nil session_token['token']
+  end
+
+  def test_failed_authentication
+    invalid_password = 'blabla'
+    au = Authentication.new(@username, invalid_password, @as_endpoint)
+    assert_raise OpenbisQueryException do
+      au.login
+    end
+  end
+end

data/test/data_store_download_test.rb

@@ -0,0 +1,62 @@
+ENV['RAILS_ENV'] ||= 'test'
+require 'coveralls'
+Coveralls.wear!
+
+require 'test/unit'
+require 'openseek-api-gem'
+
+class DataStoreDownloadTest < Test::Unit::TestCase
+  include Fairdom::OpenbisApi
+
+  def setup
+    @dss_endpoint = 'https://openbis-api.fair-dom.org/datastore_server'
+    @as_endpoint = 'https://openbis-api.fair-dom.org/openbis/openbis'
+    username = 'apiuser'
+    password = 'apiuser'
+    @token = Authentication.new(username, password, @as_endpoint).login['token']
+
+    @dest_folder = File.dirname(__FILE__) + '/tmp/'
+    FileUtils.mkdir_p @dest_folder unless File.exist?(@dest_folder)
+  end
+
+  def test_download_file
+    instance = DataStoreDownload.new(@dss_endpoint, @token)
+    dest = @dest_folder + 'utf8.txt'
+    options = { downloadType: 'file', permID: '20160210130359377-22', source: 'original/utf8.txt', dest: dest }
+    FileUtils.remove_file(dest) if File.exist?(dest)
+    result = instance.download(options)
+    assert File.exist?(dest)
+  end
+
+  def test_download_file_with_space_in_name
+    instance = DataStoreDownload.new(@dss_endpoint, @token)
+    dest = @dest_folder + 'Genes List Nature Paper Test.docx'
+    options = { downloadType: 'file', permID: '20160322172551664-35', source: 'original/Genes List Nature Paper Test.docx', dest: dest }
+    FileUtils.remove_file(dest) if File.exist?(dest)
+    result = instance.download(options)
+    assert File.exist?(dest)
+  end
+
+  def test_download_folder
+    instance = DataStoreDownload.new(@dss_endpoint, @token)
+    source = 'original/DEFAULT'
+    dest = @dest_folder
+    options = { downloadType: 'folder', permID: '20160215111736723-31', source: source, dest: dest }
+    FileUtils.remove_dir(dest + source) if File.exist?(dest + source)
+    result = instance.download(options)
+    assert File.exist?(dest + source)
+    assert File.exist?(dest + source + '/fairdom-logo-compact.svg')
+    assert File.exist?(dest + source + '/Stanford_et_al-2015-Molecular_Systems_Biology.pdf')
+  end
+
+  def test_download_dataset_files
+    instance = DataStoreDownload.new(@dss_endpoint, @token)
+    source = 'original'
+    dest = @dest_folder
+    options = { downloadType: 'dataset', permID: '20151217153943290-5', source: source, dest: dest }
+    FileUtils.remove_dir(dest + source) if File.exist?(dest + source)
+    result = instance.download(options)
+    assert File.exist?(dest + source)
+    assert File.exist?(dest + source + '/api-test')
+  end
+end

data/test/data_store_query_test.rb

@@ -0,0 +1,60 @@
+ENV['RAILS_ENV'] ||= 'test'
+require 'coveralls'
+Coveralls.wear!
+
+require 'test/unit'
+require 'openseek-api-gem'
+
+class DataStoreQueryTest < Test::Unit::TestCase
+  include Fairdom::OpenbisApi
+
+  def setup
+    @dss_endpoint = 'https://openbis-api.fair-dom.org/datastore_server'
+    @as_endpoint = 'https://openbis-api.fair-dom.org/openbis/openbis'
+    username = 'apiuser'
+    password = 'apiuser'
+    @token = Authentication.new(username, password, @as_endpoint).login['token']
+
+    @options = { entityType: 'DataSetFile', queryType: 'PROPERTY', property: 'SEEK_DATAFILE_ID', propertyValue: 'DataFile_1' }
+  end
+
+  def test_query
+    instance = DataStoreQuery.new(@dss_endpoint, @token)
+    result = instance.query(@options)
+    assert !result['datasetfiles'].empty?
+  end
+
+  def test_query_permid_attribute
+    instance = DataStoreQuery.new(@dss_endpoint, @token)
+    @options[:queryType] = 'ATTRIBUTE'
+    @options[:attribute] = 'PermID'
+    @options[:attributeValue] = '20151217153943290-5'
+    result = instance.query(@options)
+    assert !result['datasetfiles'].empty?
+  end
+
+  def test_query_multiple_permid_attribute_values
+    instance = DataStoreQuery.new(@dss_endpoint, @token)
+    @options[:queryType] = 'ATTRIBUTE'
+    @options[:attribute] = 'PermID'
+    @options[:attributeValue] = '20151217153943290-5,20160210130359377-22'
+    result = instance.query(@options)
+    assert !result['datasetfiles'].empty?
+  end
+
+  def test_query_all_permid
+    instance = DataStoreQuery.new(@dss_endpoint, @token)
+    @options[:queryType] = 'ATTRIBUTE'
+    @options[:attribute] = 'PermID'
+    @options[:attributeValue] = ''
+    result = instance.query(@options)
+    assert !result['datasetfiles'].empty?
+  end
+
+  def test_query_no_result
+    instance = DataStoreQuery.new(@dss_endpoint, @token)
+    @options[:propertyValue] = 'Some_value'
+    result = instance.query(@options)
+    assert result.empty?
+  end
+end

metadata

@@ -0,0 +1,180 @@
+--- !ruby/object:Gem::Specification
+name: openseek-api
+version: !ruby/object:Gem::Version
+  version: 0.9.1
+platform: ruby
+authors:
+- quyen
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2017-03-06 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: coveralls
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rubocop
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rubycritic
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+- !ruby/object:Gem::Dependency
+  name: cocaine
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+description: ruby gem to talk to openbis-api java
+email:
+- thucquyendn@gmail.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- ".coveralls.yml"
+- ".gitignore"
+- ".ruby-gemset"
+- ".ruby-version"
+- ".travis.yml"
+- Gemfile
+- Gemfile.lock
+- LICENSE
+- README.md
+- Rakefile
+- jars/lib/aopalliance.jar
+- jars/lib/aspectjweaver.jar
+- jars/lib/cglib-nodep.jar
+- jars/lib/cisd-args4j.jar
+- jars/lib/commons-codec.jar
+- jars/lib/commons-io.jar
+- jars/lib/commons-lang.jar
+- jars/lib/commons-logging.jar
+- jars/lib/dom4j-1.6.1.jar
+- jars/lib/dss_upload_gui.jar
+- jars/lib/geronimo-stax-api_1.0_spec-1.0.jar
+- jars/lib/guava-11.0.2.jar
+- jars/lib/httpclient.jar
+- jars/lib/httpcore.jar
+- jars/lib/ij.jar
+- jars/lib/image-viewer.jar
+- jars/lib/jackson-annotations-2.8.5.jar
+- jars/lib/jackson-core-2.8.5.jar
+- jars/lib/jackson-databind-2.8.5.jar
+- jars/lib/javassist-3.16.1-GA.jar
+- jars/lib/jline.jar
+- jars/lib/json-simple-1.1.jar
+- jars/lib/jsr305-1.3.9.jar
+- jars/lib/jython.jar
+- jars/lib/log4j.jar
+- jars/lib/openbis_api-16.05.2-r37019.jar
+- jars/lib/poi-ooxml-schemas.jar
+- jars/lib/poi-ooxml.jar
+- jars/lib/poi.jar
+- jars/lib/reflections-0.9.9-RC1.jar
+- jars/lib/sis-base.jar
+- jars/lib/spring-aop.jar
+- jars/lib/spring-beans.jar
+- jars/lib/spring-context.jar
+- jars/lib/spring-core.jar
+- jars/lib/spring-expression.jar
+- jars/lib/spring-web.jar
+- jars/lib/spring-webmvc.jar
+- jars/lib/stax-api.jar
+- jars/lib/stream-supporting-httpinvoker.jar
+- jars/lib/xml-apis-1.0.b2.jar
+- jars/lib/xmlbeans-2.3.0.jar
+- jars/openseek-api-0.9.jar
+- lib/fairdom/openbis_api/application_server_query.rb
+- lib/fairdom/openbis_api/authentication.rb
+- lib/fairdom/openbis_api/data_store_download.rb
+- lib/fairdom/openbis_api/data_store_query.rb
+- lib/fairdom/openbis_api/java_execution.rb
+- lib/fairdom/openbis_api/openbis_query.rb
+- lib/fairdom/openbis_api/openbis_query_exception.rb
+- lib/fairdom/openbis_api/versions.rb
+- lib/openseek-api-gem.rb
+- openseek-api-gem.gemspec
+- test/application_query_test.rb
+- test/authentication_test.rb
+- test/data_store_download_test.rb
+- test/data_store_query_test.rb
+homepage: ''
+licenses: []
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.4.8
+signing_key: 
+specification_version: 4
+summary: ruby gem to talk to openbis-api java
+test_files: []