opencpu 0.12.0 → 0.13.2

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data/README.md CHANGED
@@ -41,7 +41,7 @@ client = OpenCPU.client
41
41
 
42
42
  By default we send data using the json format. This format is efficient and safe, but only supports strings and numeric parameters (see [opencpu page](https://www.opencpu.org/api.html#api-arguments))
43
43
 
44
- If you want to send R code argument, you'll need to specify format: :urlencoded in your request. Note that you need to enclose your string parameters in quotes in that case, since they will be seen as variables otherwise:
44
+ If you want to send R code argument or files, you'll need to specify format: :urlencoded in your request. Note that you need to enclose your string parameters in quotes in that case, since they will be seen as variables otherwise:
45
45
 
46
46
  ```Ruby
47
47
  client.execute :digest, :hmac, data: { key: "'foo'", object: "'bar'" }, format: :urlencoded
data/lib/opencpu.rb CHANGED
@@ -1,4 +1,4 @@
1
- require 'httmultiparty'
1
+ require 'httparty'
2
2
  require 'yajl'
3
3
 
4
4
  begin
@@ -3,7 +3,7 @@ require 'opencpu/errors'
3
3
  module OpenCPU
4
4
  class Client
5
5
  include Errors
6
- include HTTMultiParty
6
+ include HTTParty
7
7
 
8
8
  def initialize
9
9
  self.class.base_uri OpenCPU.configuration.endpoint_url
@@ -94,8 +94,8 @@ module OpenCPU
94
94
  when :json
95
95
  options[:body] = data.to_json if data
96
96
  options[:headers] = {"Content-Type" => 'application/json'}
97
- when :urlencoded
98
- options[:query] = data if data
97
+ else # :urlencoded / :multipart if a file is present.
98
+ options[:body] = data if data
99
99
  end
100
100
 
101
101
  if OpenCPU.configuration.username && OpenCPU.configuration.password
@@ -1,9 +1,9 @@
1
1
  module OpenCPU
2
2
  class UnsupportedFormatError < StandardError; end
3
3
  class ResponseNotAvailableError < StandardError; end
4
-
4
+
5
5
  class DelayedCalculation
6
- include HTTMultiParty
6
+ include HTTParty
7
7
 
8
8
  attr_accessor :location
9
9
  attr_accessor :available_resources
@@ -1,6 +1,6 @@
1
1
  module OpenCPU
2
2
  MAJOR = 0
3
- MINOR = 12
4
- TINY = 0
3
+ MINOR = 13
4
+ TINY = 2
5
5
  VERSION = [MAJOR, MINOR, TINY].join('.')
6
6
  end
@@ -0,0 +1,96 @@
1
+ ---
2
+ http_interactions:
3
+ - request:
4
+ method: post
5
+ uri: https://public.opencpu.org/ocpu/library/utils/R/read.csv/json
6
+ body:
7
+ encoding: UTF-8
8
+ string: "--------------------------uMeWJC8mkGqpOEXA\r\nContent-Disposition:
9
+ form-data; name=\"file\"; filename=\"test.csv\"\r\nContent-Type: text/csv\r\n\r\n\"head1\",
10
+ \"head2\", \"head3\"\n1, 2, 3\n4, 5, 6\n\r\n--------------------------uMeWJC8mkGqpOEXA--\r\n"
11
+ headers:
12
+ Accept-Encoding:
13
+ - gzip;q=1.0,deflate;q=0.6,identity;q=0.3
14
+ Accept:
15
+ - "*/*"
16
+ User-Agent:
17
+ - Ruby
18
+ Content-Type:
19
+ - multipart/form-data; boundary=------------------------uMeWJC8mkGqpOEXA
20
+ response:
21
+ status:
22
+ code: 201
23
+ message: Created
24
+ headers:
25
+ Date:
26
+ - Thu, 25 Mar 2021 16:45:28 GMT
27
+ Content-Type:
28
+ - application/json
29
+ Content-Length:
30
+ - '68'
31
+ Connection:
32
+ - keep-alive
33
+ Set-Cookie:
34
+ - __cfduid=ddcca6afafd864d5be3ebf54be87d3fd81616690728; expires=Sat, 24-Apr-21
35
+ 16:45:28 GMT; path=/; domain=.opencpu.org; HttpOnly; SameSite=Lax
36
+ Cache-Control:
37
+ - max-age=300, public
38
+ X-Ocpu-Session:
39
+ - x022b0ae9efe318
40
+ Location:
41
+ - https://public.opencpu.org/ocpu/tmp/x022b0ae9efe318/
42
+ Access-Control-Allow-Origin:
43
+ - "*"
44
+ Access-Control-Expose-Headers:
45
+ - Location, X-ocpu-session, Content-Type, Cache-Control
46
+ Access-Control-Allow-Headers:
47
+ - Origin, Content-Type, Accept, Accept-Encoding, Cache-Control, Authorization
48
+ Access-Control-Allow-Credentials:
49
+ - 'true'
50
+ X-Ocpu-R:
51
+ - R version 4.0.4 (2021-02-15)
52
+ X-Ocpu-Locale:
53
+ - en_US.UTF-8
54
+ X-Ocpu-Time:
55
+ - 2021-03-25 16:45:28 UTC
56
+ X-Ocpu-Version:
57
+ - 2.2.2
58
+ X-Ocpu-Server:
59
+ - rApache
60
+ Vary:
61
+ - Accept-Encoding
62
+ X-Ocpu-Cache:
63
+ - MISS
64
+ Cf-Cache-Status:
65
+ - DYNAMIC
66
+ Cf-Request-Id:
67
+ - '090bdfe60e0000fa74cd15a000000001'
68
+ Expect-Ct:
69
+ - max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
70
+ Report-To:
71
+ - '{"group":"cf-nel","max_age":604800,"endpoints":[{"url":"https:\/\/a.nel.cloudflare.com\/report?s=CSE68Tj98VN34FsQ6GxERhvu4VRaA0JzlUz%2BC4SjYpsvmgJnt0QIplPYttApcvWjIGElSwKCQchbvehe0OpnRaaXHiJeYFgodWCihTPBJYt9%2FP4%3D"}]}'
72
+ Nel:
73
+ - '{"max_age":604800,"report_to":"cf-nel"}'
74
+ Server:
75
+ - cloudflare
76
+ Cf-Ray:
77
+ - 63599c1ceefafa74-AMS
78
+ Alt-Svc:
79
+ - h3-27=":443"; ma=86400, h3-28=":443"; ma=86400, h3-29=":443"; ma=86400
80
+ body:
81
+ encoding: ASCII-8BIT
82
+ string: |
83
+ [
84
+ {
85
+ "head1": 1,
86
+ "head2": 2,
87
+ "head3": 3
88
+ },
89
+ {
90
+ "head1": 4,
91
+ "head2": 5,
92
+ "head3": 6
93
+ }
94
+ ]
95
+ recorded_at: Thu, 25 Mar 2021 16:45:28 GMT
96
+ recorded_with: VCR 6.0.0
@@ -2,7 +2,7 @@
2
2
  http_interactions:
3
3
  - request:
4
4
  method: post
5
- uri: https://foo:bar@staging.opencpu.roqua.nl/ocpu/user/deploy/library/digest/R/hmac/json
5
+ uri: https://staging.opencpu.roqua.nl/ocpu/user/deploy/library/digest/R/hmac/json
6
6
  body:
7
7
  encoding: UTF-8
8
8
  string: '{"key":"foo","object":"bar"}'
@@ -9,8 +9,8 @@ describe OpenCPU::Client do
9
9
  end
10
10
  end
11
11
 
12
- it 'initializes with HTTMultiParty' do
13
- expect(described_class.ancestors).to include HTTMultiParty
12
+ it 'initializes with HTTParty' do
13
+ expect(described_class.ancestors).to include HTTParty
14
14
  end
15
15
 
16
16
  it 'defines #execute' do
@@ -143,13 +143,8 @@ describe OpenCPU::Client do
143
143
 
144
144
  context 'multipart form / file uploads' do
145
145
  it "works" do
146
- skip # vcr is broken for file uploads https://github.com/vcr/vcr/issues/441
147
146
  VCR.use_cassette :multi_part_request do |cassette|
148
- # VCR.turn_off!
149
- # WebMock.disable!
150
- response = client.execute(:utils, 'read.csv', format: nil, data: { file: File.new('spec/fixtures/test.csv') })
151
- # WebMock.enable!
152
- # VCR.turn_on!
147
+ response = client.execute(:utils, 'read.csv', format: :urlencoded, data: {file: File.new('spec/fixtures/test.csv')})
153
148
  expect(response).to eq [{"head1"=>1, "head2"=>2, "head3"=>3}, {"head1"=>4, "head2"=>5, "head3"=>6}]
154
149
  end
155
150
  end
data/spec/spec_helper.rb CHANGED
@@ -1,6 +1,3 @@
1
- require "codeclimate-test-reporter"
2
- CodeClimate::TestReporter.start
3
-
4
1
  require 'vcr'
5
2
 
6
3
  require File.expand_path('../../lib/opencpu.rb', __FILE__)
@@ -8,5 +5,4 @@ require File.expand_path('../../lib/opencpu.rb', __FILE__)
8
5
  VCR.configure do |c|
9
6
  c.cassette_library_dir = 'spec/fixtures/vcr_cassettes'
10
7
  c.hook_into :webmock
11
- c.ignore_hosts 'codeclimate.com'
12
8
  end
metadata CHANGED
@@ -1,14 +1,15 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: opencpu
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.12.0
4
+ version: 0.13.2
5
5
  platform: ruby
6
6
  authors:
7
7
  - Ivan Malykh
8
- autorequire:
8
+ - Henk van der Veen
9
+ autorequire:
9
10
  bindir: bin
10
11
  cert_chain: []
11
- date: 2017-12-12 00:00:00.000000000 Z
12
+ date: 2021-03-25 00:00:00.000000000 Z
12
13
  dependencies:
13
14
  - !ruby/object:Gem::Dependency
14
15
  name: yajl-ruby
@@ -31,26 +32,23 @@ dependencies:
31
32
  - !ruby/object:Gem::Version
32
33
  version: 1.3.1
33
34
  - !ruby/object:Gem::Dependency
34
- name: httmultiparty
35
+ name: httparty
35
36
  requirement: !ruby/object:Gem::Requirement
36
37
  requirements:
37
38
  - - "~>"
38
39
  - !ruby/object:Gem::Version
39
- version: 0.3.16
40
+ version: '0.16'
40
41
  type: :runtime
41
42
  prerelease: false
42
43
  version_requirements: !ruby/object:Gem::Requirement
43
44
  requirements:
44
45
  - - "~>"
45
46
  - !ruby/object:Gem::Version
46
- version: 0.3.16
47
+ version: '0.16'
47
48
  - !ruby/object:Gem::Dependency
48
49
  name: bundler
49
50
  requirement: !ruby/object:Gem::Requirement
50
51
  requirements:
51
- - - "~>"
52
- - !ruby/object:Gem::Version
53
- version: '1.6'
54
52
  - - ">="
55
53
  - !ruby/object:Gem::Version
56
54
  version: 1.6.0
@@ -58,9 +56,6 @@ dependencies:
58
56
  prerelease: false
59
57
  version_requirements: !ruby/object:Gem::Requirement
60
58
  requirements:
61
- - - "~>"
62
- - !ruby/object:Gem::Version
63
- version: '1.6'
64
59
  - - ">="
65
60
  - !ruby/object:Gem::Version
66
61
  version: 1.6.0
@@ -68,22 +63,16 @@ dependencies:
68
63
  name: rake
69
64
  requirement: !ruby/object:Gem::Requirement
70
65
  requirements:
71
- - - "~>"
72
- - !ruby/object:Gem::Version
73
- version: '10.3'
74
66
  - - ">="
75
67
  - !ruby/object:Gem::Version
76
- version: 10.3.1
68
+ version: 12.3.3
77
69
  type: :development
78
70
  prerelease: false
79
71
  version_requirements: !ruby/object:Gem::Requirement
80
72
  requirements:
81
- - - "~>"
82
- - !ruby/object:Gem::Version
83
- version: '10.3'
84
73
  - - ">="
85
74
  - !ruby/object:Gem::Version
86
- version: 10.3.1
75
+ version: 12.3.3
87
76
  - !ruby/object:Gem::Dependency
88
77
  name: rspec
89
78
  requirement: !ruby/object:Gem::Requirement
@@ -110,63 +99,43 @@ dependencies:
110
99
  requirements:
111
100
  - - "~>"
112
101
  - !ruby/object:Gem::Version
113
- version: '1.17'
114
- - - ">="
115
- - !ruby/object:Gem::Version
116
- version: 1.17.4
102
+ version: '3.12'
117
103
  type: :development
118
104
  prerelease: false
119
105
  version_requirements: !ruby/object:Gem::Requirement
120
106
  requirements:
121
107
  - - "~>"
122
108
  - !ruby/object:Gem::Version
123
- version: '1.17'
124
- - - ">="
125
- - !ruby/object:Gem::Version
126
- version: 1.17.4
109
+ version: '3.12'
127
110
  - !ruby/object:Gem::Dependency
128
111
  name: vcr
129
112
  requirement: !ruby/object:Gem::Requirement
130
113
  requirements:
131
114
  - - "~>"
132
115
  - !ruby/object:Gem::Version
133
- version: '2.9'
134
- - - ">="
135
- - !ruby/object:Gem::Version
136
- version: 2.9.0
116
+ version: '6.0'
137
117
  type: :development
138
118
  prerelease: false
139
119
  version_requirements: !ruby/object:Gem::Requirement
140
120
  requirements:
141
121
  - - "~>"
142
122
  - !ruby/object:Gem::Version
143
- version: '2.9'
144
- - - ">="
145
- - !ruby/object:Gem::Version
146
- version: 2.9.0
123
+ version: '6.0'
147
124
  description: This gem wraps the OpenCPU REST API.
148
125
  email:
149
- - ivan@roqua.nl
126
+ - support@roqua.nl
150
127
  executables: []
151
128
  extensions: []
152
129
  extra_rdoc_files: []
153
130
  files:
154
- - ".gitignore"
155
- - ".travis.yml"
156
- - CHANGELOG.md
157
- - Gemfile
158
- - Guardfile
159
131
  - LICENSE.txt
160
132
  - README.md
161
- - Rakefile
162
- - circle.yml
163
133
  - lib/opencpu.rb
164
134
  - lib/opencpu/client.rb
165
135
  - lib/opencpu/configuration.rb
166
136
  - lib/opencpu/delayed_calculation.rb
167
137
  - lib/opencpu/errors.rb
168
138
  - lib/opencpu/version.rb
169
- - opencpu.gemspec
170
139
  - spec/fixtures/test.csv
171
140
  - spec/fixtures/vcr_cassettes/animation_flip_coin.yml
172
141
  - spec/fixtures/vcr_cassettes/bad_request.yml
@@ -175,6 +144,7 @@ files:
175
144
  - spec/fixtures/vcr_cassettes/digest_hmac_no_parameters.yml
176
145
  - spec/fixtures/vcr_cassettes/github_animation_flip_coin.yml
177
146
  - spec/fixtures/vcr_cassettes/github_animation_flip_coin_error.yml
147
+ - spec/fixtures/vcr_cassettes/multi_part_request.yml
178
148
  - spec/fixtures/vcr_cassettes/prepare.yml
179
149
  - spec/fixtures/vcr_cassettes/response_with_na_values.yml
180
150
  - spec/fixtures/vcr_cassettes/url_encoded_request.yml
@@ -188,7 +158,7 @@ homepage: http://roqua.nl
188
158
  licenses:
189
159
  - MIT
190
160
  metadata: {}
191
- post_install_message:
161
+ post_install_message:
192
162
  rdoc_options: []
193
163
  require_paths:
194
164
  - lib
@@ -196,33 +166,33 @@ required_ruby_version: !ruby/object:Gem::Requirement
196
166
  requirements:
197
167
  - - ">="
198
168
  - !ruby/object:Gem::Version
199
- version: 1.9.3
169
+ version: 2.5.0
200
170
  required_rubygems_version: !ruby/object:Gem::Requirement
201
171
  requirements:
202
172
  - - ">="
203
173
  - !ruby/object:Gem::Version
204
174
  version: '0'
205
175
  requirements: []
206
- rubyforge_project:
207
- rubygems_version: 2.5.2
208
- signing_key:
176
+ rubygems_version: 3.1.4
177
+ signing_key:
209
178
  specification_version: 4
210
179
  summary: Wrapper around OpenCPU REST API
211
180
  test_files:
181
+ - spec/spec_helper.rb
182
+ - spec/lib/opencpu_spec.rb
183
+ - spec/lib/opencpu/client_spec.rb
184
+ - spec/lib/opencpu/configuration_spec.rb
185
+ - spec/lib/opencpu/delayed_calculation_spec.rb
212
186
  - spec/fixtures/test.csv
213
- - spec/fixtures/vcr_cassettes/animation_flip_coin.yml
214
- - spec/fixtures/vcr_cassettes/bad_request.yml
215
- - spec/fixtures/vcr_cassettes/description.yml
216
- - spec/fixtures/vcr_cassettes/digest_hmac.yml
217
- - spec/fixtures/vcr_cassettes/digest_hmac_no_parameters.yml
218
- - spec/fixtures/vcr_cassettes/github_animation_flip_coin.yml
187
+ - spec/fixtures/vcr_cassettes/url_encoded_request.yml
219
188
  - spec/fixtures/vcr_cassettes/github_animation_flip_coin_error.yml
220
- - spec/fixtures/vcr_cassettes/prepare.yml
189
+ - spec/fixtures/vcr_cassettes/digest_hmac_no_parameters.yml
190
+ - spec/fixtures/vcr_cassettes/description.yml
221
191
  - spec/fixtures/vcr_cassettes/response_with_na_values.yml
222
- - spec/fixtures/vcr_cassettes/url_encoded_request.yml
192
+ - spec/fixtures/vcr_cassettes/bad_request.yml
193
+ - spec/fixtures/vcr_cassettes/prepare.yml
194
+ - spec/fixtures/vcr_cassettes/github_animation_flip_coin.yml
195
+ - spec/fixtures/vcr_cassettes/digest_hmac.yml
196
+ - spec/fixtures/vcr_cassettes/animation_flip_coin.yml
223
197
  - spec/fixtures/vcr_cassettes/user_digest_hmac.yml
224
- - spec/lib/opencpu/client_spec.rb
225
- - spec/lib/opencpu/configuration_spec.rb
226
- - spec/lib/opencpu/delayed_calculation_spec.rb
227
- - spec/lib/opencpu_spec.rb
228
- - spec/spec_helper.rb
198
+ - spec/fixtures/vcr_cassettes/multi_part_request.yml
data/.gitignore DELETED
@@ -1,22 +0,0 @@
1
- *.swp
2
- *.gem
3
- *.rbc
4
- .DS_Store
5
- .bundle
6
- .config
7
- .yardoc
8
- Gemfile.lock
9
- InstalledFiles
10
- _yardoc
11
- coverage
12
- doc/
13
- lib/bundler/man
14
- pkg
15
- rdoc
16
- spec/reports
17
- test/tmp
18
- test/version_tmp
19
- tmp
20
- .byebug-history
21
-
22
- .ruby-version
data/.travis.yml DELETED
@@ -1,8 +0,0 @@
1
- language: ruby
2
- rvm:
3
- - 1.9.3-p547
4
- - 2.0.0-p576
5
- - 2.1.3
6
- script: bundle exec rspec spec
7
- before_install:
8
- - gem install bundler
data/CHANGELOG.md DELETED
@@ -1,51 +0,0 @@
1
- # 0.11.0
2
-
3
- * BREAKING CHANGE: on unknown failure, it raises OpenCPUError instead of UnknownError
4
-
5
- # 0.10.0
6
-
7
- * BREAKING CHANGE: on request failure, it raises a specific error (BadRequest, InternalServerError or Unknown Error)
8
- instead of RuntimeError
9
-
10
- # 0.9.2
11
-
12
- * Added `OpenCPU::Client#description` to retrieve a packages' description file
13
-
14
- # 0.9.1
15
-
16
- * Added `convert_na_to_nil=true/false` option to Client#execute
17
-
18
- # 0.9.0
19
-
20
- * Added support for Github R repos through OpenCPU
21
-
22
- # 0.8.2
23
-
24
- * Added uri.port
25
-
26
- # 0.8.1
27
-
28
- * Better error messages
29
-
30
- # 0.8.0
31
-
32
- * BREAKING CHANGE: verify ssl of opencpu server by default again.
33
- * Added configuration option verify_ssl so you can disable it.
34
- * Added format: :urlencoded for sending R-code and file parameters.
35
-
36
- # 0.7.8
37
-
38
- * Fixed gem by forcing json again (will add format option in 0.8)
39
-
40
- # 0.7.7 Broken! Do not use!
41
-
42
- * Added support for multipart requests [@amaunz]
43
-
44
- # 0.7.6
45
-
46
- * Made gem compatible with Ruby 1.9.3
47
-
48
- # 0.7.0
49
-
50
- * Added support for user packages [@ivdma]
51
-
data/Gemfile DELETED
@@ -1,13 +0,0 @@
1
- source 'https://rubygems.org'
2
-
3
- group :development do
4
- gem 'listen', '~> 3.0.8'
5
- gem 'guard-rspec', '~> 4.2'
6
- gem 'guard-bundler', '~> 2.0'
7
- end
8
-
9
- group :test do
10
- gem "codeclimate-test-reporter", require: nil
11
- end
12
- # Specify your gem's dependencies in opencpu.gemspec
13
- gemspec
data/Guardfile DELETED
@@ -1,10 +0,0 @@
1
- guard :bundler do
2
- watch('Gemfile')
3
- watch(/^.+\.gemspec/)
4
- end
5
-
6
- guard :rspec, cmd: 'bundle exec rspec --color --format=documentation' do
7
- watch(%r{^spec/.+_spec\.rb$})
8
- watch(%r{^lib/(.+)\.rb$}) { |m| "spec/lib/#{m[1]}_spec.rb" }
9
- watch('spec/spec_helper.rb') { "spec" }
10
- end
data/Rakefile DELETED
@@ -1 +0,0 @@
1
- require 'bundler/gem_tasks'
data/circle.yml DELETED
@@ -1,5 +0,0 @@
1
- machine:
2
- environment:
3
- CODECLIMATE_REPO_TOKEN: ecaec3d271bf32a8e203cafb71cc565d57a86dc0571b5529b491935e786001ff
4
- ruby:
5
- version: 2.1.0
data/opencpu.gemspec DELETED
@@ -1,31 +0,0 @@
1
- # coding: utf-8
2
- lib = File.expand_path('../lib', __FILE__)
3
- $LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
4
- require 'opencpu/version'
5
-
6
- Gem::Specification.new do |spec|
7
- spec.name = "opencpu"
8
- spec.version = OpenCPU::VERSION
9
- spec.authors = ["Ivan Malykh"]
10
- spec.email = ["ivan@roqua.nl"]
11
- spec.summary = %q{Wrapper around OpenCPU REST API}
12
- spec.description = %q{This gem wraps the OpenCPU REST API.}
13
- spec.homepage = "http://roqua.nl"
14
- spec.license = "MIT"
15
-
16
- spec.files = `git ls-files -z`.split("\x0")
17
- spec.executables = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
18
- spec.test_files = spec.files.grep(%r{^(test|spec|features)/})
19
- spec.require_paths = ["lib"]
20
-
21
- spec.required_ruby_version = '>= 1.9.3'
22
-
23
- spec.add_dependency 'yajl-ruby', '~> 1.3', '>= 1.3.1'
24
- spec.add_dependency 'httmultiparty', '~> 0.3.16'
25
-
26
- spec.add_development_dependency 'bundler', '~> 1.6', '>= 1.6.0'
27
- spec.add_development_dependency 'rake', '~> 10.3', '>= 10.3.1'
28
- spec.add_development_dependency 'rspec', '~> 2.14', '>= 2.14.1'
29
- spec.add_development_dependency 'webmock', '~> 1.17', '>= 1.17.4'
30
- spec.add_development_dependency 'vcr', '~> 2.9', '>= 2.9.0'
31
- end