openbel-api 1.1.0-java → 1.1.1-java

checksums.yaml

@@ -1,7 +1,7 @@
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-  data.tar.gz: 9e132e96f9542dff268447a45ae9a3d38440239d
+  metadata.gz: 121260d75016a848b38d53fd21034b6a3d487401
+  data.tar.gz: 23ebb2c2df88257a76db162dd0fbf05269977237
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data/CHANGELOG.md

@@ -3,6 +3,24 @@ All notable changes to openbel-api will be documented in this file. The curated
 
 This project adheres to [Semantic Versioning][Semantic Versioning].
 
+## [1.1.0][1.1.0] - 2017-01-21
+
+### Added
+- Updated BEL Statement Completion - added semantic completion
+
+### Changed
+- Enhanced deployment tooling using make and bumpversion
+
+- Altered validation to return 422 when BEL Statement is invalid
+
+- Annotation and Namespace API endpoints with prefixes will uppercase prefix as prefixes are now stored in Uppercase format
+
+- POST/PUT /api/nanopubs uses default namespaces/annotations if references object is not part of nanopub
+
+- Now /completions and /validation both return the same resource type for the "validation" JSON object
+
+- Added location to POST /api/nanopub to response body
+
 ## [1.0.4][1.0.4] - 2016-12-28
 ### Added
 - Docker containers for development and production use of OpenBEL

data/README.md

@@ -257,25 +257,17 @@ API documentation with *Try it* functionality is available here [OpenBEL API doc
 
 Releases of *openbel-api* should follow these steps:
 
-1. Update the version in the `VERSION` file.
 
-2. Add changes for this version to the `CHANGELOG` file. This file is modelled after http://keepachangelog.com/.
+1. Add changes for this version to the `CHANGELOG` file. This file is modelled after http://keepachangelog.com/.
 
-3. Push the changes for `VERSION` and `CHANGELOG` on the master branch.
+1. Push the changes for `CHANGELOG` on the master branch.
 
-4. Ensure the *master* branch has all of the required changes.
+1. Ensure the *master* branch has all of the required changes.
 
-5. Create a git tag, named after the version, on the *master* branch. Push this tag to GitHub.
+1. Run `make deploy-{major|minor|patch}` in order to bump the version, tag and push tag
 
-6. Create the Ruby and Java RubyGem for *openbel-api*.
+1. Create a release on GitHub for this version and attach the gem file (openbel-api-VERSION-java.gem)
 
-  `gem build .gemspec`
-
-7. Create a release on GitHub for this version and attach the gem file.
-
-8. Push gems to RubyGems.
-
-  `gem push openbel-api-VERSION-java.gem`
 
 -----
 

data/VERSION

@@ -1 +1 @@
-1.1.0
+1.1.1

data/app/openbel/api/resources/nanopub_transform.rb

@@ -22,9 +22,10 @@ module OpenBEL
           if nanopub
             experiment_context = nanopub.experiment_context
             if experiment_context != nil
-              experiment_context.values.map! { |annotation|
-                transform_annotation(annotation, base_url)
-              }
+              nanopub.experiment_context.values =
+                experiment_context.values.flat_map { |annotation|
+                  transform_annotation(annotation, base_url)
+                }
             end
           end
         end
@@ -62,29 +63,49 @@ module OpenBEL
         def structured_annotation(name, value, base_url)
           annotation = @annotations.find(name).first
           if annotation
+            annotation_label  = annotation.pref_label.first.to_s
+            annotation_prefix = annotation.prefix.first.to_s
+
             if value.respond_to?(:each)
-              {
-                :name  => annotation.prefLabel.to_s,
-                :value => value.map { |v|
-                  mapped = annotation.find(v).first
-                  mapped ? mapped.prefLabel.to_s : v
-                }
+              value.map { |v|
+                annotation_value = annotation.find(v).first
+
+                if annotation_value
+                  identifier  = annotation_value.identifier.first.to_s
+                  value_label = annotation_value.pref_label.first.to_s
+                  {
+                    :name  => annotation_label,
+                    :value => value_label,
+                    :uri   => ANNOTATION_VALUE_URI % [
+                      base_url,
+                      annotation_prefix,
+                      identifier
+                    ]
+                  }
+                else
+                  {
+                    :name  => annotation_label,
+                    :value => v
+                  }
+                end
               }
             else
               annotation_value = annotation.find(value).first
+              identifier       = annotation_value.identifier.first.to_s
+              value_label      = annotation_value.pref_label.first.to_s
               if annotation_value
                 {
-                  :name  => annotation.prefLabel.to_s,
-                  :value => annotation_value.prefLabel.to_s,
+                  :name  => annotation_label,
+                  :value => value_label,
                   :uri   => ANNOTATION_VALUE_URI % [
                     base_url,
-                    annotation.prefix.to_s,
-                    annotation_value.identifier.to_s
+                    annotation_prefix,
+                    identifier
                   ]
                 }
               else
                 {
-                  :name  => annotation.prefLabel.to_s,
+                  :name  => annotation_label,
                   :value => value
                 }
               end

data/app/openbel/api/routes/expressions.rb

@@ -215,7 +215,6 @@ module OpenBEL
           )
         end
 
-
         response.headers['Content-Type'] = 'application/json'
         MultiJson.dump({
           :expression_components => statement_components(statement, flatten),
@@ -271,19 +270,20 @@ module OpenBEL
       get '/api/expressions/*/validation/?' do
         bel = params[:splat].first
 
-        if request.accept.any? { |accept| accept.to_s == 'application/json' }
-          filter =
-            BELParser::ASTFilter.new(
-              BELParser::ASTGenerator.new("#{bel}\n"),
-              :simple_statement,
-              :observed_term,
-              :nested_statement
-            )
-          _, _, ast = filter.each.first
+        filter =
+          BELParser::ASTFilter.new(
+            BELParser::ASTGenerator.new("#{bel}\n"),
+            :simple_statement,
+            :observed_term,
+            :nested_statement
+          )
+        _, _, ast = filter.each.first
 
-          if ast.nil? || ast.empty?
-            response.headers['Content-Type'] = 'application/json'
-            return render_json(
+        if ast.nil? || ast.empty?
+          halt(
+            400,
+            {'Content-Type' => 'application/json'},
+            render_json(
               {
                 valid_syntax:    false,
                 valid_semantics: false,
@@ -292,62 +292,67 @@ module OpenBEL
                 term_signatures: []
               }
             )
-          end
+          )
+        end
 
-          message             = ''
-          terms               = ast.first.traverse.select { |node| node.type == :term }.to_a
-          semantics_functions =
-            BELParser::Language::Semantics.semantics_functions.reject { |fun|
-              fun == BELParser::Language::Semantics::SignatureMapping
-            }
+        message = ''
+        terms   = ast.first.traverse.select { |node| node.type == :term }.to_a
 
-          semantic_warnings =
-            ast
-              .first
-              .traverse
-              .flat_map { |node|
-                semantics_functions.flat_map { |func|
-                  func.map(node, @spec, @supported_namespaces)
-                }
-              }
-              .compact
+        semantics_functions =
+          BELParser::Language::Semantics.semantics_functions.reject { |fun|
+            fun == BELParser::Language::Semantics::SignatureMapping
+          }
 
-          if semantic_warnings.empty?
-            valid = true
-          else
-            valid = false
-            message =
-              semantic_warnings.reduce('') { |msg, warning|
-                msg << "#{warning}\n"
+        semantic_warnings =
+          ast
+            .first
+            .traverse
+            .flat_map { |node|
+              semantics_functions.flat_map { |func|
+                func.map(node, @spec, @supported_namespaces)
               }
-            message << "\n"
-          end
+            }
+            .compact
 
-          urir      = BELParser::Resource.default_uri_reader
-          urlr      = BELParser::Resource.default_url_reader
-          validator = BELParser::Language::ExpressionValidator.new(@spec, @supported_namespaces, urir, urlr)
-          term_semantics =
-            terms.map { |term|
-              term_result = validator.validate(term)
-              valid      &= term_result.valid_semantics?
-              bel_term    = serialize(term)
-
-              unless valid
-                message << "Term: #{bel_term}\n"
-                term_result.invalid_signature_mappings.map { |m|
-                  message << "  #{m}\n"
-                }
-                message << "\n"
-              end
+        if semantic_warnings.empty?
+          valid = true
+        else
+          valid = false
+          message =
+            semantic_warnings.reduce('') { |msg, warning|
+              msg << "#{warning}\n"
+            }
+          message << "\n"
+        end
 
-              {
-                term:               bel_term,
-                valid_signatures:   term_result.valid_signature_mappings.map(&:to_s),
-                invalid_signatures: term_result.invalid_signature_mappings.map(&:to_s)
+        urir      = BELParser::Resource.default_uri_reader
+        urlr      = BELParser::Resource.default_url_reader
+        validator = BELParser::Language::ExpressionValidator.new(@spec, @supported_namespaces, urir, urlr)
+        term_semantics =
+          terms.map { |term|
+            term_result = validator.validate(term)
+            valid      &= term_result.valid_semantics?
+            bel_term    = serialize(term)
+
+            unless valid
+              message << "Term: #{bel_term}\n"
+              term_result.invalid_signature_mappings.map { |m|
+                message << "  #{m}\n"
               }
+              message << "\n"
+            end
+
+            {
+              term:               bel_term,
+              valid:              term_result.valid_semantics?,
+              valid_signatures:   term_result.valid_signature_mappings.map(&:to_s),
+              invalid_signatures: term_result.invalid_signature_mappings.map(&:to_s)
             }
+          }
 
-          response.headers['Content-Type'] = 'application/json'
+        halt(
+          valid ? 200 : 422,
+          {'Content-Type' => 'application/json'},
           render_json(
             {
               validation: {
@@ -360,16 +365,7 @@ module OpenBEL
               }
             }
           )
-        else
-          response.headers['Content-Type'] = 'text/plain'
-          @expression_validator.each(
-            StringIO.new("#{bel}\n")
-          ) do |(_, _, _, result)|
-            return result.to_s
-          end
-
-          return "Invalid syntax."
-        end
+        )
       end
     end
   end

data/app/openbel/api/routes/nanopubs.rb

@@ -25,11 +25,31 @@ module OpenBEL
         tdb = OpenBEL::Settings[:resource_rdf][:jena][:tdb_directory]
         @rr = BEL::RdfRepository.plugins[:jena].create_repository(:tdb_directory => tdb)
 
-
-        # Annotations using RdfRepository
-        @annotations                    = BEL::Resource::Annotations.new(@rr)
+        # Annotations and Namespaces using RdfRepository
+        @annotations                   = BEL::Resource::Annotations.new(@rr)
+        @namespaces                    = BEL::Resource::Namespaces.new(@rr)
         @annotation_transform          = AnnotationTransform.new(@annotations)
         @annotation_grouping_transform = AnnotationGroupingTransform.new
+        @default_references            = {
+          :annotations => @annotations.each.map { |an|
+            prefix = an.prefix.first.capitalize
+
+            {
+              :keyword => prefix,
+              :type    => :uri,
+              :domain  => an.uri.to_s
+            }
+          },
+          :namespaces  => @namespaces.each.map  { |ns|
+            prefix = ns.prefix.first.upcase
+
+            {
+              :keyword => prefix,
+              :type    => :uri,
+              :domain  => ns.uri.to_s
+            }
+          }
+        }
       end
 
       configure :development do |config|
@@ -126,7 +146,10 @@ module OpenBEL
           )
         end
 
-        nanopub = ::BEL::Nanopub::Nanopub.create(nanopub_obj[:nanopub])
+        nanopub_hash                = nanopub_obj[:nanopub]
+        nanopub_hash[:references] ||= @default_references
+
+        nanopub = ::BEL::Nanopub::Nanopub.create(nanopub_hash)
         # STDERR.puts "DBG: nanopub Variable config is #{nanopub.inspect}"
 
         # Standardize annotations.
@@ -225,9 +248,11 @@ module OpenBEL
           )
         end
 
+        nanopub_hash                = nanopub_obj[:nanopub]
+        nanopub_hash[:references] ||= @default_references
+
         # transformation
-        nanopub = nanopub_obj[:nanopub]
-        nanopub  = ::BEL::Nanopub::Nanopub.create(nanopub)
+        nanopub  = ::BEL::Nanopub::Nanopub.create(nanopub_hash)
         @annotation_transform.transform_nanopub!(nanopub, base_url)
 
         facets                  = map_nanopub_facets(nanopub)

data/config/config.yml

@@ -8,7 +8,7 @@ bel:
   #     (BEL version 1.0 specification)
   #   2.0
   #     (BEL version 2.0 specification)
-  version: 2.0
+  version: 1.0
 
 # Storage of nanopubs through the Mongo database.
 nanopub_store:
@@ -56,7 +56,7 @@ resource_rdf:
 # Full-text search over annotation and namespace values using SQLite.
 resource_search:
   sqlite:
-    database_file: '/data/rdf_resources.db'
+    database_file: '/data/rdf_resources/biological-concepts-rdf.db'
 
 # Set a secret used during session creation....
 session_secret: 'changeme'

metadata

@@ -1,362 +1,362 @@
 --- !ruby/object:Gem::Specification
 name: openbel-api
 version: !ruby/object:Gem::Version
-  version: 1.1.0
+  version: 1.1.1
 platform: java
 authors:
 - Anthony Bargnesi
 - Nick Bargnesi
 - William Hayes
-autorequire:
+autorequire: 
 bindir: bin
 cert_chain: []
 date: 2017-01-13 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
+  name: bel
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
         version: 1.1.0
-  name: bel
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
         version: 1.1.0
 - !ruby/object:Gem::Dependency
+  name: bel-search-sqlite
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
         version: 1.1.0
-  name: bel-search-sqlite
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
         version: 1.1.0
 - !ruby/object:Gem::Dependency
+  name: bel-rdf-jena
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
         version: 1.1.0
-  name: bel-rdf-jena
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
         version: 1.1.0
 - !ruby/object:Gem::Dependency
+  name: json-ld
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
-  name: json-ld
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
 - !ruby/object:Gem::Dependency
+  name: rdf-json
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
-  name: rdf-json
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
 - !ruby/object:Gem::Dependency
+  name: rdf-rdfa
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
-  name: rdf-rdfa
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
 - !ruby/object:Gem::Dependency
+  name: rdf-xsd
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
-  name: rdf-xsd
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
 - !ruby/object:Gem::Dependency
+  name: rdf-rdfxml
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
-  name: rdf-rdfxml
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
 - !ruby/object:Gem::Dependency
+  name: rdf-trig
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
-  name: rdf-trig
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
 - !ruby/object:Gem::Dependency
+  name: rdf-trix
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
-  name: rdf-trix
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
 - !ruby/object:Gem::Dependency
+  name: rdf-turtle
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
-  name: rdf-turtle
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 2.0.0
 - !ruby/object:Gem::Dependency
+  name: mongo
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.12.5
-  name: mongo
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.12.5
 - !ruby/object:Gem::Dependency
+  name: bson
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.12.5
-  name: bson
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.12.5
 - !ruby/object:Gem::Dependency
+  name: dot_hash
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 0.5.9
-  name: dot_hash
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 0.5.9
 - !ruby/object:Gem::Dependency
+  name: jrjackson
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 0.3.7
-  name: jrjackson
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 0.3.7
 - !ruby/object:Gem::Dependency
+  name: json_schema
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 0.10.0
-  name: json_schema
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 0.10.0
 - !ruby/object:Gem::Dependency
+  name: multi_json
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.11.2
-  name: multi_json
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.11.2
 - !ruby/object:Gem::Dependency
+  name: oat
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 0.4.6
-  name: oat
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 0.4.6
 - !ruby/object:Gem::Dependency
+  name: puma
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 3.1.0
-  name: puma
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 3.1.0
 - !ruby/object:Gem::Dependency
+  name: rack
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.6.4
-  name: rack
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.6.4
 - !ruby/object:Gem::Dependency
+  name: rack-cors
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 0.4.0
-  name: rack-cors
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 0.4.0
 - !ruby/object:Gem::Dependency
+  name: rack-handlers
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 0.7.0
-  name: rack-handlers
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 0.7.0
 - !ruby/object:Gem::Dependency
+  name: sinatra
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.4.6
-  name: sinatra
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.4.6
 - !ruby/object:Gem::Dependency
+  name: sinatra-contrib
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.4.6
-  name: sinatra-contrib
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.4.6
 - !ruby/object:Gem::Dependency
+  name: jwt
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - '='
       - !ruby/object:Gem::Version
         version: 1.5.2
-  name: jwt
-  prerelease: false
   type: :runtime
+  prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - '='
@@ -365,9 +365,9 @@ dependencies:
 description: The OpenBEL API provides a RESTful API over HTTP to manage BEL knowledge.
 email: abargnesi@selventa.com
 executables:
-- setup-docker.sh
 - openbel-api
 - openbel-config
+- setup-docker.sh
 extensions: []
 extra_rdoc_files: []
 files:
@@ -448,7 +448,7 @@ homepage: https://github.com/OpenBEL/openbel-api
 licenses:
 - Apache-2.0
 metadata: {}
-post_install_message:
+post_install_message: 
 rdoc_options: []
 require_paths:
 - app
@@ -464,9 +464,9 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubyforge_project:
-rubygems_version: 2.6.8
-signing_key:
+rubyforge_project: 
+rubygems_version: 2.4.6
+signing_key: 
 specification_version: 4
 summary: The OpenBEL API provided over RESTful HTTP endpoints.
 test_files: []