oddb2xml 2.4.2 → 2.4.3
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- checksums.yaml +4 -4
- data/.travis.yml +5 -5
- data/History.txt +7 -0
- data/lib/oddb2xml/builder.rb +11 -11
- data/lib/oddb2xml/calc.rb +2 -2
- data/lib/oddb2xml/cli.rb +3 -5
- data/lib/oddb2xml/downloader.rb +0 -1
- data/lib/oddb2xml/extractor.rb +4 -0
- data/lib/oddb2xml/util.rb +21 -0
- data/lib/oddb2xml/version.rb +1 -1
- data/spec/builder_spec.rb +11 -3
- data/spec/data/problems.txt +4 -0
- data/spec/downloader_spec.rb +1 -3
- metadata +4 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
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---
|
2
2
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SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: f3bb1935034ceac75c20a7a760647779e269cfbd
|
4
|
+
data.tar.gz: c7a68dad6adbf982c83d6ef8b9794bc551f2233b
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 549c6c25a4e157b3dd463fbae8ab2fea31d26a6ef0eac7c6020acc8a0904ed6c638d4ee29f4bad6e594874686a1c24e3b6ec84fefb0bf6baf0e85381e453f546
|
7
|
+
data.tar.gz: 0dce9a5cf5bb1afc960d524cf2208e27d79c516c0f00b42596783004de39f2b3d949c66874dba7576e2bfd41768bc21bf850c58e7dba91b873ffca1b0e5e9515
|
data/.travis.yml
CHANGED
@@ -11,16 +11,16 @@ before_install:
|
|
11
11
|
script: bundle exec rspec
|
12
12
|
|
13
13
|
rvm:
|
14
|
-
-
|
15
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-
- 2.
|
16
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-
- 2.1
|
17
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-
- 2.2
|
18
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-
- 2.3.1
|
14
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+
- 2.2.7
|
15
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+
- 2.3.4
|
16
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+
- 2.4.1
|
19
17
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- ruby-head
|
20
18
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|
21
19
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matrix:
|
22
20
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allow_failures:
|
23
21
|
- rvm: ruby-head
|
22
|
+
- rvm: 2.2.7
|
23
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+
- rvm: 2.3.4
|
24
24
|
|
25
25
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notifications:
|
26
26
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email:
|
data/History.txt
CHANGED
@@ -1,3 +1,10 @@
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1
|
+
=== 2.4.3 / 11.09.2017
|
2
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+
|
3
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+
* Never drop lines with UTF-8 problems while creating XML files
|
4
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+
* Fix some rspec errors
|
5
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+
* Travis runs only for ruby 2.2.7 and newer
|
6
|
+
* Do not emit a DEL field for limitations, as it is not specifid in the oddb2xml.xsd
|
7
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+
|
1
8
|
=== 2.4.2 / 6.09.2017
|
2
9
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|
3
10
|
* Ignore lines that cannot be converted from UTF-8 to ISO-8859-1
|
data/lib/oddb2xml/builder.rb
CHANGED
@@ -299,10 +299,14 @@ module Oddb2xml
|
|
299
299
|
_builder = Nokogiri::XML::Builder.new(:encoding => 'utf-8') do |xml|
|
300
300
|
xml.doc.tag_suffix = @tag_suffix
|
301
301
|
datetime = Time.new.strftime('%FT%T%z')
|
302
|
-
xml.LIMITATION(XML_OPTIONS)
|
302
|
+
xml.LIMITATION(XML_OPTIONS) do
|
303
303
|
nbr_records = 0
|
304
304
|
@limitations.each do |lim|
|
305
|
-
|
305
|
+
if lim[:id].empty?
|
306
|
+
puts "Skipping empty id of #{lim}"
|
307
|
+
next
|
308
|
+
end
|
309
|
+
xml.LIM('DT' => '') do
|
306
310
|
case lim[:key]
|
307
311
|
when :swissmedic_number8
|
308
312
|
xml.SwissmedicNo8 lim[:id]
|
@@ -319,20 +323,16 @@ module Oddb2xml
|
|
319
323
|
xml.DSCRD lim[:desc_de]
|
320
324
|
xml.DSCRF lim[:desc_fr]
|
321
325
|
xml.VDAT lim[:vdate]
|
322
|
-
if lim[:del]
|
323
|
-
xml.DEL 3
|
324
|
-
end
|
325
326
|
nbr_records += 1
|
326
|
-
|
327
|
-
}
|
327
|
+
end
|
328
328
|
end
|
329
|
-
xml.RESULT
|
329
|
+
xml.RESULT do
|
330
330
|
xml.OK_ERROR 'OK'
|
331
331
|
xml.NBR_RECORD nbr_records
|
332
332
|
xml.ERROR_CODE ''
|
333
333
|
xml.MESSAGE ''
|
334
|
-
|
335
|
-
|
334
|
+
end
|
335
|
+
end
|
336
336
|
end
|
337
337
|
Oddb2xml.add_hash(_builder.to_xml)
|
338
338
|
end
|
@@ -642,7 +642,7 @@ module Oddb2xml
|
|
642
642
|
xml.SUBSTANCE_NAME substance.name
|
643
643
|
xml.IS_ACTIVE_AGENT substance.is_active_agent if emit_active
|
644
644
|
if substance.dose
|
645
|
-
if substance.qty.is_a?(Float) or substance.qty.is_a?(
|
645
|
+
if substance.qty.is_a?(Float) or substance.qty.is_a?(Integer)
|
646
646
|
xml.QTY substance.qty
|
647
647
|
xml.UNIT substance.unit
|
648
648
|
else
|
data/lib/oddb2xml/calc.rb
CHANGED
@@ -289,7 +289,7 @@ public
|
|
289
289
|
end
|
290
290
|
|
291
291
|
def pkg_size_to_int(pkg_size, skip_last_part = false)
|
292
|
-
return pkg_size if pkg_size.is_a?(
|
292
|
+
return pkg_size if pkg_size.is_a?(Integer)
|
293
293
|
return 1 unless pkg_size
|
294
294
|
parts = pkg_size.split(/\s*x\s*/i)
|
295
295
|
parts = parts[0..-2] if skip_last_part and parts.size > 1
|
@@ -349,4 +349,4 @@ public
|
|
349
349
|
return nil
|
350
350
|
end
|
351
351
|
end
|
352
|
-
end
|
352
|
+
end
|
data/lib/oddb2xml/cli.rb
CHANGED
@@ -137,12 +137,10 @@ module Oddb2xml
|
|
137
137
|
end
|
138
138
|
File.open(File.join(WorkDir, file), 'w:utf-8') do |fh|
|
139
139
|
output.split("\n").each do |line|
|
140
|
-
|
141
|
-
# We want to ignore lines which are not really UTF-8 encoded
|
142
|
-
iso_8859_1 = line.encode('ISO-8859-1')
|
140
|
+
if /.xml$/i.match(file)
|
143
141
|
fh.puts(line)
|
144
|
-
|
145
|
-
puts
|
142
|
+
else
|
143
|
+
fh.puts(Oddb2xml.convert_to_8859_1(line))
|
146
144
|
end
|
147
145
|
end
|
148
146
|
end
|
data/lib/oddb2xml/downloader.rb
CHANGED
data/lib/oddb2xml/extractor.rb
CHANGED
@@ -124,6 +124,10 @@ module Oddb2xml
|
|
124
124
|
key = :swissmedic_number8
|
125
125
|
id = item[:packages][ean][key].to_s
|
126
126
|
end
|
127
|
+
if id.empty? && item[:packages][ean][ :swissmedic_number8]
|
128
|
+
key = :swissmedic_number8
|
129
|
+
id = item[:packages][ean][key].to_s
|
130
|
+
end
|
127
131
|
lims.each do |lim|
|
128
132
|
limitation = {
|
129
133
|
:it => item[:it_code],
|
data/lib/oddb2xml/util.rb
CHANGED
@@ -20,6 +20,27 @@ module Oddb2xml
|
|
20
20
|
@atc_csv_origin = 'https://raw.githubusercontent.com/epha/robot/master/data/manual/swissmedic/atc.csv'
|
21
21
|
@atc_csv_content = {}
|
22
22
|
|
23
|
+
def Oddb2xml.convert_to_8859_1(line)
|
24
|
+
begin
|
25
|
+
# We want to ignore lines which are not really UTF-8 encoded
|
26
|
+
return line.encode('ISO-8859-1')
|
27
|
+
rescue => error
|
28
|
+
ausgabe = ''
|
29
|
+
0.upto(line.size-1).each do |idx|
|
30
|
+
begin
|
31
|
+
if line[idx].ord == 8211
|
32
|
+
ausgabe += '-'
|
33
|
+
else
|
34
|
+
ausgabe += line[idx].encode('ISO-8859-1')
|
35
|
+
end
|
36
|
+
rescue => error
|
37
|
+
puts "#{error}: in #{line} at #{idx}"
|
38
|
+
end
|
39
|
+
end
|
40
|
+
end
|
41
|
+
ausgabe.encode('ISO-8859-1')
|
42
|
+
end
|
43
|
+
|
23
44
|
def Oddb2xml.add_epha_changes_for_ATC(iksnr, atc_code)
|
24
45
|
if @atc_csv_content.size == 0
|
25
46
|
open(@atc_csv_origin).readlines.each{
|
data/lib/oddb2xml/version.rb
CHANGED
data/spec/builder_spec.rb
CHANGED
@@ -60,8 +60,8 @@ ARTICLE_COMMON_ELEMENTS = [
|
|
60
60
|
['ARTICLE/ART/ARTBAR/BC', Oddb2xml::ORPHAN_GTIN.to_s],
|
61
61
|
['ARTICLE/ART/ARTBAR/BC', Oddb2xml::FRIDGE_GTIN.to_s],
|
62
62
|
['ARTICLE/ART/DSCRD', 'NAROPIN Inj Lös 0.2 % 5 Polybag 100 ml'],
|
63
|
-
['ARTICLE/ART/DSCRF', 'NAROPIN sol inj 0.2 % 5 polybag 100 ml
|
64
|
-
['ARTICLE/ART/SORTD', 'NAROPIN INJ
|
63
|
+
['ARTICLE/ART/DSCRF', 'NAROPIN sol inj 0.2 % 5 polybag 100 ml'],
|
64
|
+
['ARTICLE/ART/SORTD', 'NAROPIN INJ LÖS 0.2 % 5 POLYBAG 100 ML'],
|
65
65
|
['ARTICLE/ART/SORTF', 'NAROPIN SOL INJ 0.2 % 5 POLYBAG 100 ML'],
|
66
66
|
['ARTICLE/ART/SYN1D', 'Hirudoid'],
|
67
67
|
['ARTICLE/ART/SYN1F', 'Hirudoid'],
|
@@ -943,6 +943,14 @@ if RUN_ALL
|
|
943
943
|
IO.readlines(dat_filename).each{ |line| check_article_IGM_format(line, 892, true) }
|
944
944
|
end
|
945
945
|
end
|
946
|
+
context 'when utf-8 to iso-8859 fails' do
|
947
|
+
it 'should return a correct 8859 line' do
|
948
|
+
lines = IO.readlines(File.join(Oddb2xml::SpecData, 'problems.txt'))
|
949
|
+
out = Oddb2xml.convert_to_8859_1(lines.first)
|
950
|
+
expect(out.encoding.to_s).to eq 'ISO-8859-1'
|
951
|
+
expect(out.chomp).to eq '<NAME_DE>SENSURA Mio 1t Uro 10-33 midi con lig so op 10 Stk</NAME_DE>'
|
952
|
+
end
|
953
|
+
end
|
954
|
+
end
|
946
955
|
end
|
947
956
|
end
|
948
|
-
end
|
@@ -0,0 +1,4 @@
|
|
1
|
+
<NAME_DE>SENSURA Mio 1t Uro 10–33 midi con lig so op 10 Stk</NAME_DE>
|
2
|
+
<NAME_FR>SENSURA Mio 1t Uro 10–33 midi con lig so op 10 pce</NAME_FR>
|
3
|
+
<NAME_DE>SENSURA Mio 1t Uro 10–33 maxi con lig so op 10 Stk</NAME_DE>
|
4
|
+
<NAME_FR>SENSURA Mio 1t Uro 10–33 maxi con lig so op 10 pce</NAME_FR>
|
data/spec/downloader_spec.rb
CHANGED
@@ -326,7 +326,7 @@ describe Oddb2xml::EphaDownloader do
|
|
326
326
|
expect(csv.bytes).not_to be nil
|
327
327
|
end
|
328
328
|
it 'should clean up current directory' do
|
329
|
-
File.exist?('epha_interactions.csv').
|
329
|
+
expect(File.exist?('epha_interactions.csv')).to eq(false)
|
330
330
|
end
|
331
331
|
it 'should save under download' do
|
332
332
|
expect(File.exist?(File.join(Oddb2xml::Downloads, 'epha_interactions.csv'))).to eq(true)
|
@@ -533,12 +533,10 @@ describe Oddb2xml::MedregbmDownloader do
|
|
533
533
|
context 'download betrieb txt' do
|
534
534
|
let(:txt) { @downloader.download }
|
535
535
|
it 'should return valid String' do
|
536
|
-
pending 'Should handle SSL issues'
|
537
536
|
expect(txt).to be_a String
|
538
537
|
expect(txt.bytes).not_to be nil
|
539
538
|
end
|
540
539
|
it 'should clean up current directory' do
|
541
|
-
pending 'Should handle SSL issues'
|
542
540
|
expect { txt }.not_to raise_error
|
543
541
|
expect(File.exist?('oddb_company.xls')).to eq(false)
|
544
542
|
end
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: oddb2xml
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 2.4.
|
4
|
+
version: 2.4.3
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Yasuhiro Asaka, Zeno R.R. Davatz, Niklaus Giger
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2017-09-
|
11
|
+
date: 2017-09-11 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: rubyzip
|
@@ -343,6 +343,7 @@ files:
|
|
343
343
|
- spec/data/oddb2xml_files_bm_update.txt
|
344
344
|
- spec/data/oddb2xml_files_lppv.txt
|
345
345
|
- spec/data/oddb2xml_files_nonpharma.xls
|
346
|
+
- spec/data/problems.txt
|
346
347
|
- spec/data/swissmedic_fridges.html
|
347
348
|
- spec/data/swissmedic_info.html
|
348
349
|
- spec/data/swissmedic_info_2.html
|
@@ -421,6 +422,7 @@ test_files:
|
|
421
422
|
- spec/data/oddb2xml_files_bm_update.txt
|
422
423
|
- spec/data/oddb2xml_files_lppv.txt
|
423
424
|
- spec/data/oddb2xml_files_nonpharma.xls
|
425
|
+
- spec/data/problems.txt
|
424
426
|
- spec/data/swissmedic_fridges.html
|
425
427
|
- spec/data/swissmedic_info.html
|
426
428
|
- spec/data/swissmedic_info_2.html
|