oba-client 2.0.2 → 2.0.3

data/History.md

@@ -1,3 +1,6 @@
+## 2.0.3 / 2010-07-17
+Quick fix in docs.
+
 ## 2.0.2 / 2010-07-08
 Parse version and nbAnnotation for ontologies.
 

data/lib/oba-client.rb

@@ -9,7 +9,7 @@ require "uri"
 # things we do: get text, and parse it. We can do both independently or 
 # serially.
 class OBAClient
-  VERSION = "2.0.2"
+  VERSION = "2.0.3"
 
   ##
   # A high HTTP read timeout, as the service sometimes takes awhile to respond.
@@ -117,8 +117,7 @@ class OBAClient
   ONTOLOGY_BEANS_XPATH   = "/success/data/annotatorResultBean/ontologies/ontologyUsedBean"
 
   ##
-  # Attributes for mapping concepts (annotation concepts add one additional
-  # attribute. See also {ANNOTATION_CONCEPT_ATTRIBUTES}.
+  # Attributes for mapping concepts (only one type).
   CONCEPT_ATTRIBUTES = {
     :id              => lambda {|c| c.xpath("id").text.to_i},
     :localConceptId  => lambda {|c| c.xpath("localConceptId").text},
@@ -146,7 +145,7 @@ class OBAClient
   
 
   ##
-  # Toplevel attributes for mapping and mgrep contexts (both will add 
+  # Attributes for mapping and mgrep contexts (both will add 
   # additional attributes).
   CONTEXT_ATTRIBUTES = {
     :contextName     => lambda {|c| c.xpath("contextName").text},
@@ -156,7 +155,7 @@ class OBAClient
   }
   
   ##
-  #  Toplevel attributes for annotation contexts.
+  #  Attributes for annotation contexts.
   ANNOTATION_CONTEXT_ATTRIBUTES = {
     :score   => lambda {|c| c.xpath("score").text.to_i},
     :concept => lambda {|c| parse_concept(c.xpath("concept").first)},
@@ -164,14 +163,14 @@ class OBAClient
   }
 
   ##
-  # Toplevel attributes for mapping contexts.
+  # Attributes for mapping contexts.
   MAPPED_CONTEXT_ATTRIBUTES = CONTEXT_ATTRIBUTES.merge(
-    :mappingType => lambda {|c| c.xpath("mappingType").text},
+    :mappingType   => lambda {|c| c.xpath("mappingType").text},
     :mappedConcept => lambda {|c| parse_concept(c.xpath("mappedConcept").first)}
   )
 
   ##
-  # Toplevel attributes for mgrep contexts.
+  # Attributes for mgrep contexts.
   MGREP_CONTEXT_ATTRIBUTES = CONTEXT_ATTRIBUTES.merge(
     :name           => lambda {|c| c.xpath("term/name").text},
     :localConceptId => lambda {|c| c.xpath("term/localConceptId").text},
@@ -179,10 +178,12 @@ class OBAClient
     :dictionaryId   => lambda {|c| c.xpath("term/dictionaryId").text}
   )
 
+  ## 
+  # Map the bean type to the set of attributes we parse from it.
   CONTEXT_CLASSES = {
-    "annotationContextBean"  => ANNOTATION_CONTEXT_ATTRIBUTES,
-    "mgrepContextBean"       => MGREP_CONTEXT_ATTRIBUTES,
-    "mappingContextBean"     => MAPPED_CONTEXT_ATTRIBUTES,
+    "annotationContextBean" => ANNOTATION_CONTEXT_ATTRIBUTES,
+    "mgrepContextBean"      => MGREP_CONTEXT_ATTRIBUTES,
+    "mappingContextBean"    => MAPPED_CONTEXT_ATTRIBUTES,
   }
 
   ##

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: oba-client
 version: !ruby/object:Gem::Version 
-  hash: 11
+  hash: 9
   prerelease: false
   segments: 
   - 2
   - 0
-  - 2
-  version: 2.0.2
+  - 3
+  version: 2.0.3
 platform: ruby
 authors: 
 - Rob Tirrell
@@ -15,7 +15,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2010-07-08 00:00:00 -07:00
+date: 2010-07-16 00:00:00 -07:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency