nyaplot 0.1.4 → 0.1.5

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Files changed (9) hide show
  1. checksums.yaml +4 -4
  2. data/.gitmodules +3 -0
  3. data/examples/notebook/Interaction_with_DataFrame.ipynb +650 -572
  4. data/examples/notebook/Introduction.ipynb +475 -457
  5. data/examples/notebook/Mapnya.ipynb +372 -423
  6. data/lib/nyaplot/core.rb +4 -1
  7. data/lib/nyaplot/templates/iruby.erb +8 -1
  8. data/lib/nyaplot/version.rb +1 -1
  9. metadata +3 -2
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data/.gitmodules ADDED
@@ -0,0 +1,3 @@
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+ [submodule "lib/mapnya/datasets/geo-boundaries-world-110m"]
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+ path = lib/mapnya/datasets/geo-boundaries-world-110m
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+ url = https://github.com/datasets/geo-boundaries-world-110m.git
data/examples/notebook/Interaction_with_DataFrame.ipynb CHANGED
@@ -1,608 +1,686 @@
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  {
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- "metadata": {
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- "language": "ruby",
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- "name": "",
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- "signature": "sha256:f3b00ded06dda0b068ae890bed29a5316678bef352b278ef403656a75c65158a"
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- },
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- "nbformat": 3,
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- "nbformat_minor": 0,
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- "worksheets": [
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+ "cells": [
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  {
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- "cells": [
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- {
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- "cell_type": "heading",
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- "level": 1,
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- "metadata": {},
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- "source": [
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- "Nyaplot Tutorial 2: Interaction with DataFrame"
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- ]
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- },
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- {
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- "cell_type": "markdown",
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- "metadata": {},
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- "source": [
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- "I have alreay explained about Nyaplot::DataFrame in tutorial 1, but it's not enough to tell the usefulness. This notebook consists of 2 use case using DataFrame."
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- ]
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- },
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- {
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- "cell_type": "code",
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- "collapsed": false,
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- "input": [
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- "require 'nyaplot'"
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- ],
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- "language": "python",
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- "metadata": {},
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- "outputs": [
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- {
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- "html": [
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- "<script type='text/javascript'>if(window['d3'] === undefined ||\n",
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- " window['Nyaplot'] === undefined){\n",
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- " var path = {\"d3\":\"http://d3js.org/d3.v3.min\"};\n",
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- "\n",
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- "\n",
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- "\n",
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- " var shim = {\"d3\":{\"exports\":\"d3\"}};\n",
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- "\n",
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- " require.config({paths: path, shim:shim});\n",
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- "\n",
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- "\n",
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- "require(['d3'], function(d3){window['d3']=d3;console.log('finished loading d3');\n",
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- "\n",
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- "\tvar script = d3.select(\"head\")\n",
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- "\t .append(\"script\")\n",
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- "\t .attr(\"src\", \"http://cdn.rawgit.com/domitry/Nyaplotjs/master/release/nyaplot.js\")\n",
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- "\t .attr(\"async\", true);\n",
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- "\n",
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- "\tscript[0][0].onload = script[0][0].onreadystatechange = function(){\n",
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- "\n",
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- "\n",
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- "\t var event = document.createEvent(\"HTMLEvents\");\n",
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- "\t event.initEvent(\"load_nyaplot\",false,false);\n",
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- "\t window.dispatchEvent(event);\n",
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- "\t console.log('Finished loading Nyaplotjs');\n",
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- "\n",
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- "\t};\n",
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- "\n",
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- "\n",
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- "});\n",
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- "}\n",
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- "</script>"
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- ],
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- "metadata": {},
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- "output_type": "pyout",
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- "prompt_number": 1,
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- "text": [
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- "\"if(window['d3'] === undefined ||\\n window['Nyaplot'] === undefined){\\n var path = {\\\"d3\\\":\\\"http://d3js.org/d3.v3.min\\\"};\\n\\n\\n\\n var shim = {\\\"d3\\\":{\\\"exports\\\":\\\"d3\\\"}};\\n\\n require.config({paths: path, shim:shim});\\n\\n\\nrequire(['d3'], function(d3){window['d3']=d3;console.log('finished loading d3');\\n\\n\\tvar script = d3.select(\\\"head\\\")\\n\\t .append(\\\"script\\\")\\n\\t .attr(\\\"src\\\", \\\"http://cdn.rawgit.com/domitry/Nyaplotjs/master/release/nyaplot.js\\\")\\n\\t .attr(\\\"async\\\", true);\\n\\n\\tscript[0][0].onload = script[0][0].onreadystatechange = function(){\\n\\n\\n\\t var event = document.createEvent(\\\"HTMLEvents\\\");\\n\\t event.initEvent(\\\"load_nyaplot\\\",false,false);\\n\\t window.dispatchEvent(event);\\n\\t console.log('Finished loading Nyaplotjs');\\n\\n\\t};\\n\\n\\n});\\n}\\n\""
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- ]
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- },
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- {
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- "metadata": {},
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- "output_type": "pyout",
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- "prompt_number": 1,
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- "text": [
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- "true"
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- ]
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- }
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- ],
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- "prompt_number": 1
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- },
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- {
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- "cell_type": "heading",
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- "level": 2,
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- "metadata": {},
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- "source": [
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- "Case 1: Scatter with original tooltips"
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- ]
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- },
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- {
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- "cell_type": "markdown",
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- "metadata": {},
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- "source": [
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- "First, prepare sample data and put it into DataFrame. Then build a scatter plot based on it."
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- ]
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- },
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- {
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- "cell_type": "code",
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- "collapsed": false,
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- "input": [
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- "samples = Array.new(10).map.with_index{|d,i| 'cat'+i.to_s}\n",
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- "x=[];y=[];home=[]\n",
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- "10.times do\n",
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- " x.push(5*rand)\n",
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- " y.push(5*rand)\n",
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- "end\n",
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- "df = Nyaplot::DataFrame.new({x:x,y:y,name:samples})\n",
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- "df"
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- ],
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- "language": "python",
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- "metadata": {},
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- "outputs": [
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- {
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- "html": [
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- "<table><tr><th>x</th><th>y</th><th>name</th></tr><tr><td>4.484045721238493</td><td>1.4236755629461113</td><td>cat0</td></tr><tr><td>0.09192346825461384</td><td>3.859486471834251</td><td>cat1</td></tr><tr><td>2.7691211926797203</td><td>0.2724593604033648</td><td>cat2</td></tr><tr><td>3.790577538193376</td><td>4.3849875032095715</td><td>cat3</td></tr><tr><td>3.075663771695602</td><td>1.4208854855110642</td><td>cat4</td></tr><tr><td>1.0768103258740274</td><td>1.3575402862086254</td><td>cat5</td></tr><tr><td>1.7266282564027458</td><td>2.061477073499303</td><td>cat6</td></tr><tr><td>3.0954512252218382</td><td>0.3593608483818478</td><td>cat7</td></tr><tr><td>2.7941521911455696</td><td>0.4127745317214565</td><td>cat8</td></tr><tr><td>4.523075237278958</td><td>2.2397417984244443</td><td>cat9</td></tr></table>"
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- ],
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- "metadata": {},
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- "output_type": "pyout",
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- "prompt_number": 2,
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- "text": [
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- "#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\"}]>"
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- ]
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- }
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- ],
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- "prompt_number": 2
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- },
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- {
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- "cell_type": "code",
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- "collapsed": false,
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- "input": [
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- "plot = Nyaplot::Plot.new\n",
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- "plot.x_label(\"weight [kg]\")\n",
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- "plot.y_label(\"height [m]\")\n",
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- "sc = plot.add_with_df(df, :scatter, :x, :y)"
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- ],
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- "language": "python",
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- "metadata": {},
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- "outputs": [
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- {
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- "metadata": {},
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- "output_type": "pyout",
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- "prompt_number": 3,
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- "text": [
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- "#<Nyaplot::Diagram:0xb930de14 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y}, :data=>\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}, @xrange=[0.09192346825461384, 4.523075237278958], @yrange=[0.2724593604033648, 4.3849875032095715]>"
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- ]
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- }
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- ],
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- "prompt_number": 3
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- },
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- {
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- "cell_type": "code",
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- "collapsed": false,
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- "input": [
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- "plot.show"
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- ],
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- "language": "python",
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- "metadata": {},
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- "outputs": [
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- {
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- "html": [
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- "<div id='vis-29c1a9e8-17ad-4c7b-a4a1-18f6cc98363f'></div>\n",
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- "<script>\n",
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- "(function(){\n",
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- " var render = function(){\n",
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- " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\"},\"data\":\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.09192346825461384,4.523075237278958],\"yrange\":[0.2724593604033648,4.3849875032095715]}}],\"data\":{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\":[{\"x\":4.484045721238493,\"y\":1.4236755629461113,\"name\":\"cat0\"},{\"x\":0.09192346825461384,\"y\":3.859486471834251,\"name\":\"cat1\"},{\"x\":2.7691211926797203,\"y\":0.2724593604033648,\"name\":\"cat2\"},{\"x\":3.790577538193376,\"y\":4.3849875032095715,\"name\":\"cat3\"},{\"x\":3.075663771695602,\"y\":1.4208854855110642,\"name\":\"cat4\"},{\"x\":1.0768103258740274,\"y\":1.3575402862086254,\"name\":\"cat5\"},{\"x\":1.7266282564027458,\"y\":2.061477073499303,\"name\":\"cat6\"},{\"x\":3.0954512252218382,\"y\":0.3593608483818478,\"name\":\"cat7\"},{\"x\":2.7941521911455696,\"y\":0.4127745317214565,\"name\":\"cat8\"},{\"x\":4.523075237278958,\"y\":2.2397417984244443,\"name\":\"cat9\"}]},\"extension\":[]}\n",
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- " Nyaplot.core.parse(model, '#vis-29c1a9e8-17ad-4c7b-a4a1-18f6cc98363f');\n",
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- " };\n",
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- " if(window['Nyaplot']==undefined){\n",
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- " window.addEventListener('load_nyaplot', render, false);\n",
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- "\treturn;\n",
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- " } else {\n",
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- " render();\n",
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- " }\n",
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- "})();\n",
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- "</script>\n"
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- ],
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- "metadata": {},
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- "output_type": "pyout",
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- "prompt_number": 4,
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- "text": [
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- "#<Nyaplot::Frame:0xb940e1d8 @properties={:panes=>[#<Nyaplot::Plot:0xb930e2c4 @properties={:diagrams=>[#<Nyaplot::Diagram:0xb930de14 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y}, :data=>\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}, @xrange=[0.09192346825461384, 4.523075237278958], @yrange=[0.2724593604033648, 4.3849875032095715]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.09192346825461384, 4.523075237278958], :yrange=>[0.2724593604033648, 4.3849875032095715]}}>], :data=>{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"=>#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\"}]>}, :extension=>[]}>"
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- ]
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- }
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- ],
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- "prompt_number": 4
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- },
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- {
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- "cell_type": "markdown",
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- "metadata": {},
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- "source": [
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- "The plot above is not contain `name` information, so add it into tool-tip. Use `tooltip_contents` to add contents to tool-tip."
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- ]
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- },
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- {
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- "cell_type": "code",
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- "collapsed": false,
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- "input": [
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- "sc.tooltip_contents([:name])\n",
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- "plot.show"
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- ],
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- "language": "python",
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- "metadata": {},
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- "outputs": [
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- {
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- "html": [
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- "<div id='vis-1ab16562-7747-4b73-81ad-97b947668a26'></div>\n",
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- "<script>\n",
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- "(function(){\n",
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- " var render = function(){\n",
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- " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\"]},\"data\":\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.09192346825461384,4.523075237278958],\"yrange\":[0.2724593604033648,4.3849875032095715]}}],\"data\":{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\":[{\"x\":4.484045721238493,\"y\":1.4236755629461113,\"name\":\"cat0\"},{\"x\":0.09192346825461384,\"y\":3.859486471834251,\"name\":\"cat1\"},{\"x\":2.7691211926797203,\"y\":0.2724593604033648,\"name\":\"cat2\"},{\"x\":3.790577538193376,\"y\":4.3849875032095715,\"name\":\"cat3\"},{\"x\":3.075663771695602,\"y\":1.4208854855110642,\"name\":\"cat4\"},{\"x\":1.0768103258740274,\"y\":1.3575402862086254,\"name\":\"cat5\"},{\"x\":1.7266282564027458,\"y\":2.061477073499303,\"name\":\"cat6\"},{\"x\":3.0954512252218382,\"y\":0.3593608483818478,\"name\":\"cat7\"},{\"x\":2.7941521911455696,\"y\":0.4127745317214565,\"name\":\"cat8\"},{\"x\":4.523075237278958,\"y\":2.2397417984244443,\"name\":\"cat9\"}]},\"extension\":[]}\n",
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- " Nyaplot.core.parse(model, '#vis-1ab16562-7747-4b73-81ad-97b947668a26');\n",
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- " };\n",
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- " if(window['Nyaplot']==undefined){\n",
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- " window.addEventListener('load_nyaplot', render, false);\n",
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- "\treturn;\n",
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- " } else {\n",
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- " render();\n",
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- " }\n",
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- "})();\n",
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- "</script>\n"
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- ],
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- "metadata": {},
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- "output_type": "pyout",
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- "prompt_number": 5,
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- "text": [
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- "#<Nyaplot::Frame:0xb94a504c @properties={:panes=>[#<Nyaplot::Plot:0xb930e2c4 @properties={:diagrams=>[#<Nyaplot::Diagram:0xb930de14 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name]}, :data=>\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}, @xrange=[0.09192346825461384, 4.523075237278958], @yrange=[0.2724593604033648, 4.3849875032095715]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.09192346825461384, 4.523075237278958], :yrange=>[0.2724593604033648, 4.3849875032095715]}}>], :data=>{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"=>#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\"}]>}, :extension=>[]}>"
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- ]
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- }
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- ],
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- "prompt_number": 5
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- },
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- {
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- "cell_type": "markdown",
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- "metadata": {},
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- "source": [
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- "Tool-tip can include multiple lines, but the DataFrame has only three columns and that's not enough to add more line to tool-tip. Let's add `home` column to it."
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- ]
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- },
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- {
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- "cell_type": "code",
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- "collapsed": false,
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- "input": [
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- "address = ['London', 'Kyoto', 'Los Angeles', 'Puretoria']\n",
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- "home = Array.new(10,'').map{|d| address.clone.sample}\n",
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- "df.home = home\n",
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- "df"
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- ],
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- "language": "python",
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- "metadata": {},
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- "outputs": [
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- {
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- "html": [
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- "<table><tr><th>x</th><th>y</th><th>name</th><th>home</th></tr><tr><td>4.484045721238493</td><td>1.4236755629461113</td><td>cat0</td><td>Puretoria</td></tr><tr><td>0.09192346825461384</td><td>3.859486471834251</td><td>cat1</td><td>London</td></tr><tr><td>2.7691211926797203</td><td>0.2724593604033648</td><td>cat2</td><td>London</td></tr><tr><td>3.790577538193376</td><td>4.3849875032095715</td><td>cat3</td><td>London</td></tr><tr><td>3.075663771695602</td><td>1.4208854855110642</td><td>cat4</td><td>Kyoto</td></tr><tr><td>1.0768103258740274</td><td>1.3575402862086254</td><td>cat5</td><td>Kyoto</td></tr><tr><td>1.7266282564027458</td><td>2.061477073499303</td><td>cat6</td><td>Puretoria</td></tr><tr><td>3.0954512252218382</td><td>0.3593608483818478</td><td>cat7</td><td>Puretoria</td></tr><tr><td>2.7941521911455696</td><td>0.4127745317214565</td><td>cat8</td><td>Los Angeles</td></tr><tr><td>4.523075237278958</td><td>2.2397417984244443</td><td>cat9</td><td>Los Angeles</td></tr></table>"
261
- ],
262
- "metadata": {},
263
- "output_type": "pyout",
264
- "prompt_number": 6,
265
- "text": [
266
- "#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\", :home=>\"Puretoria\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\", :home=>\"London\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\", :home=>\"London\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\", :home=>\"London\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\", :home=>\"Kyoto\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\", :home=>\"Kyoto\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\", :home=>\"Puretoria\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\", :home=>\"Los Angeles\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\", :home=>\"Los Angeles\"}]>"
267
- ]
268
- }
269
- ],
270
- "prompt_number": 6
271
- },
4
+ "cell_type": "markdown",
5
+ "metadata": {},
6
+ "source": [
7
+ "# Nyaplot Tutorial 2: Interaction with DataFrame"
8
+ ]
9
+ },
10
+ {
11
+ "cell_type": "markdown",
12
+ "metadata": {},
13
+ "source": [
14
+ "I have alreay explained about Nyaplot::DataFrame in tutorial 1, but it's not enough to tell the usefulness. This notebook consists of 2 use case using DataFrame."
15
+ ]
16
+ },
17
+ {
18
+ "cell_type": "code",
19
+ "execution_count": 1,
20
+ "metadata": {
21
+ "collapsed": false
22
+ },
23
+ "outputs": [
272
24
  {
273
- "cell_type": "code",
274
- "collapsed": false,
275
- "input": [
276
- "sc.tooltip_contents([:name, :home])\n",
277
- "plot.show"
278
- ],
279
- "language": "python",
25
+ "data": {
26
+ "text/html": [
27
+ "<script type='text/javascript'>if(window['d3'] === undefined ||\n",
28
+ " window['Nyaplot'] === undefined){\n",
29
+ " var path = {\"d3\":\"http://d3js.org/d3.v3.min\",\"downloadable\":\"http://rawgit.com/domitry/d3-downloadable/close_menu_when_clicked_outside/d3-downloadable\"};\n",
30
+ "\n",
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+ "\n",
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+ "\n",
33
+ " var shim = {\"d3\":{\"exports\":\"d3\"},\"downloadable\":{\"exports\":\"downloadable\"}};\n",
34
+ "\n",
35
+ " require.config({paths: path, shim:shim});\n",
36
+ "\n",
37
+ "\n",
38
+ "require(['d3'], function(d3){window['d3']=d3;console.log('finished loading d3');require(['downloadable'], function(downloadable){window['downloadable']=downloadable;console.log('finished loading downloadable');\n",
39
+ "\n",
40
+ "\tvar script = d3.select(\"head\")\n",
41
+ "\t .append(\"script\")\n",
42
+ "\t .attr(\"src\", \"http://cdn.rawgit.com/domitry/Nyaplotjs/master/release/nyaplot.js\")\n",
43
+ "\t .attr(\"async\", true);\n",
44
+ "\n",
45
+ "\tscript[0][0].onload = script[0][0].onreadystatechange = function(){\n",
46
+ "\n",
47
+ "\n",
48
+ "\t var event = document.createEvent(\"HTMLEvents\");\n",
49
+ "\t event.initEvent(\"load_nyaplot\",false,false);\n",
50
+ "\t window.dispatchEvent(event);\n",
51
+ "\t console.log('Finished loading Nyaplotjs');\n",
52
+ "\n",
53
+ "\t};\n",
54
+ "\n",
55
+ "\n",
56
+ "});});\n",
57
+ "}\n",
58
+ "</script>"
59
+ ],
60
+ "text/plain": [
61
+ "\"if(window['d3'] === undefined ||\\n window['Nyaplot'] === undefined){\\n var path = {\\\"d3\\\":\\\"http://d3js.org/d3.v3.min\\\",\\\"downloadable\\\":\\\"http://rawgit.com/domitry/d3-downloadable/close_menu_when_clicked_outside/d3-downloadable\\\"};\\n\\n\\n\\n var shim = {\\\"d3\\\":{\\\"exports\\\":\\\"d3\\\"},\\\"downloadable\\\":{\\\"exports\\\":\\\"downloadable\\\"}};\\n\\n require.config({paths: path, shim:shim});\\n\\n\\nrequire(['d3'], function(d3){window['d3']=d3;console.log('finished loading d3');require(['downloadable'], function(downloadable){window['downloadable']=downloadable;console.log('finished loading downloadable');\\n\\n\\tvar script = d3.select(\\\"head\\\")\\n\\t .append(\\\"script\\\")\\n\\t .attr(\\\"src\\\", \\\"http://cdn.rawgit.com/domitry/Nyaplotjs/master/release/nyaplot.js\\\")\\n\\t .attr(\\\"async\\\", true);\\n\\n\\tscript[0][0].onload = script[0][0].onreadystatechange = function(){\\n\\n\\n\\t var event = document.createEvent(\\\"HTMLEvents\\\");\\n\\t event.initEvent(\\\"load_nyaplot\\\",false,false);\\n\\t window.dispatchEvent(event);\\n\\t console.log('Finished loading Nyaplotjs');\\n\\n\\t};\\n\\n\\n});});\\n}\\n\""
62
+ ]
63
+ },
64
+ "execution_count": 1,
280
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  "metadata": {},
281
- "outputs": [
282
- {
283
- "html": [
284
- "<div id='vis-1fbe4f29-5e29-43b8-84ca-84dd544ef716'></div>\n",
285
- "<script>\n",
286
- "(function(){\n",
287
- " var render = function(){\n",
288
- " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\",\"home\"]},\"data\":\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.09192346825461384,4.523075237278958],\"yrange\":[0.2724593604033648,4.3849875032095715]}}],\"data\":{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\":[{\"x\":4.484045721238493,\"y\":1.4236755629461113,\"name\":\"cat0\",\"home\":\"Puretoria\"},{\"x\":0.09192346825461384,\"y\":3.859486471834251,\"name\":\"cat1\",\"home\":\"London\"},{\"x\":2.7691211926797203,\"y\":0.2724593604033648,\"name\":\"cat2\",\"home\":\"London\"},{\"x\":3.790577538193376,\"y\":4.3849875032095715,\"name\":\"cat3\",\"home\":\"London\"},{\"x\":3.075663771695602,\"y\":1.4208854855110642,\"name\":\"cat4\",\"home\":\"Kyoto\"},{\"x\":1.0768103258740274,\"y\":1.3575402862086254,\"name\":\"cat5\",\"home\":\"Kyoto\"},{\"x\":1.7266282564027458,\"y\":2.061477073499303,\"name\":\"cat6\",\"home\":\"Puretoria\"},{\"x\":3.0954512252218382,\"y\":0.3593608483818478,\"name\":\"cat7\",\"home\":\"Puretoria\"},{\"x\":2.7941521911455696,\"y\":0.4127745317214565,\"name\":\"cat8\",\"home\":\"Los Angeles\"},{\"x\":4.523075237278958,\"y\":2.2397417984244443,\"name\":\"cat9\",\"home\":\"Los Angeles\"}]},\"extension\":[]}\n",
289
- " Nyaplot.core.parse(model, '#vis-1fbe4f29-5e29-43b8-84ca-84dd544ef716');\n",
290
- " };\n",
291
- " if(window['Nyaplot']==undefined){\n",
292
- " window.addEventListener('load_nyaplot', render, false);\n",
293
- "\treturn;\n",
294
- " } else {\n",
295
- " render();\n",
296
- " }\n",
297
- "})();\n",
298
- "</script>\n"
299
- ],
300
- "metadata": {},
301
- "output_type": "pyout",
302
- "prompt_number": 7,
303
- "text": [
304
- "#<Nyaplot::Frame:0xb9589d14 @properties={:panes=>[#<Nyaplot::Plot:0xb930e2c4 @properties={:diagrams=>[#<Nyaplot::Diagram:0xb930de14 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name, :home]}, :data=>\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}, @xrange=[0.09192346825461384, 4.523075237278958], @yrange=[0.2724593604033648, 4.3849875032095715]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.09192346825461384, 4.523075237278958], :yrange=>[0.2724593604033648, 4.3849875032095715]}}>], :data=>{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"=>#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\", :home=>\"Puretoria\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\", :home=>\"London\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\", :home=>\"London\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\", :home=>\"London\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\", :home=>\"Kyoto\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\", :home=>\"Kyoto\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\", :home=>\"Puretoria\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\", :home=>\"Los Angeles\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\", :home=>\"Los Angeles\"}]>}, :extension=>[]}>"
305
- ]
306
- }
307
- ],
308
- "prompt_number": 7
66
+ "output_type": "execute_result"
309
67
  },
310
68
  {
311
- "cell_type": "markdown",
69
+ "data": {
70
+ "text/plain": [
71
+ "true"
72
+ ]
73
+ },
74
+ "execution_count": 1,
312
75
  "metadata": {},
313
- "source": [
314
- "Then, fill points on the scatter in different colors according to 'home' column. To do so, specify column name by `fill_by` method."
315
- ]
316
- },
76
+ "output_type": "execute_result"
77
+ }
78
+ ],
79
+ "source": [
80
+ "gem 'nyaplot', '0.1.4'\n",
81
+ "require 'nyaplot'"
82
+ ]
83
+ },
84
+ {
85
+ "cell_type": "markdown",
86
+ "metadata": {},
87
+ "source": [
88
+ "## Case 1: Scatter with original tooltips"
89
+ ]
90
+ },
91
+ {
92
+ "cell_type": "markdown",
93
+ "metadata": {},
94
+ "source": [
95
+ "First, prepare sample data and put it into DataFrame. Then build a scatter plot based on it."
96
+ ]
97
+ },
98
+ {
99
+ "cell_type": "code",
100
+ "execution_count": 2,
101
+ "metadata": {
102
+ "collapsed": false
103
+ },
104
+ "outputs": [
317
105
  {
318
- "cell_type": "code",
319
- "collapsed": false,
320
- "input": [
321
- "colors = Nyaplot::Colors.qual"
322
- ],
323
- "language": "python",
106
+ "data": {
107
+ "text/html": [
108
+ "<table><tr><th>x</th><th>y</th><th>name</th></tr><tr><td>2.533836113916067</td><td>2.631899474983983</td><td>cat0</td></tr><tr><td>0.1024998687651274</td><td>1.545418909093887</td><td>cat1</td></tr><tr><td>3.7461048248377695</td><td>2.030734135218859</td><td>cat2</td></tr><tr><td>2.682614237604856</td><td>3.123632569213127</td><td>cat3</td></tr><tr><td>2.9896303529418993</td><td>2.207080541884825</td><td>cat4</td></tr><tr><td>1.6887400962344323</td><td>2.8767628395210614</td><td>cat5</td></tr><tr><td>2.9320767913177077</td><td>3.8545594841670985</td><td>cat6</td></tr><tr><td>1.5212437682212843</td><td>4.286194230558136</td><td>cat7</td></tr><tr><td>0.26379655576528716</td><td>0.7786874328736609</td><td>cat8</td></tr><tr><td>4.637112398516696</td><td>2.6885733522950144</td><td>cat9</td></tr></table>"
109
+ ],
110
+ "text/plain": [
111
+ "#<Nyaplot::DataFrame:0x00000001af5090 @name=\"ba3ffbe6-5069-4f05-a16c-c75d33121599\", @rows=[{:x=>2.533836113916067, :y=>2.631899474983983, :name=>\"cat0\"}, {:x=>0.1024998687651274, :y=>1.545418909093887, :name=>\"cat1\"}, {:x=>3.7461048248377695, :y=>2.030734135218859, :name=>\"cat2\"}, {:x=>2.682614237604856, :y=>3.123632569213127, :name=>\"cat3\"}, {:x=>2.9896303529418993, :y=>2.207080541884825, :name=>\"cat4\"}, {:x=>1.6887400962344323, :y=>2.8767628395210614, :name=>\"cat5\"}, {:x=>2.9320767913177077, :y=>3.8545594841670985, :name=>\"cat6\"}, {:x=>1.5212437682212843, :y=>4.286194230558136, :name=>\"cat7\"}, {:x=>0.26379655576528716, :y=>0.7786874328736609, :name=>\"cat8\"}, {:x=>4.637112398516696, :y=>2.6885733522950144, :name=>\"cat9\"}]>"
112
+ ]
113
+ },
114
+ "execution_count": 2,
324
115
  "metadata": {},
325
- "outputs": [
326
- {
327
- "html": [
328
- "<table><tr><th>rgb(102,194,165)</th><th>rgb(252,141,98)</th><th>rgb(141,160,203)</th><th>rgb(231,138,195)</th><th>rgb(166,216,84)</th><th>rgb(255,217,47)</th><th>rgb(229,196,148)</th><th>rgb(179,179,179)</th></tr><tr><td style=\"background-color:rgb(102,194,165);\">&nbsp;</td><td style=\"background-color:rgb(252,141,98);\">&nbsp;</td><td style=\"background-color:rgb(141,160,203);\">&nbsp;</td><td style=\"background-color:rgb(231,138,195);\">&nbsp;</td><td style=\"background-color:rgb(166,216,84);\">&nbsp;</td><td style=\"background-color:rgb(255,217,47);\">&nbsp;</td><td style=\"background-color:rgb(229,196,148);\">&nbsp;</td><td style=\"background-color:rgb(179,179,179);\">&nbsp;</td></tr></table>"
329
- ],
330
- "metadata": {},
331
- "output_type": "pyout",
332
- "prompt_number": 8,
333
- "text": [
334
- "#<Nyaplot::Color:0xb9793e0c @source=[\"rgb(102,194,165)\", \"rgb(252,141,98)\", \"rgb(141,160,203)\", \"rgb(231,138,195)\", \"rgb(166,216,84)\", \"rgb(255,217,47)\", \"rgb(229,196,148)\", \"rgb(179,179,179)\"]>"
335
- ]
336
- }
337
- ],
338
- "prompt_number": 8
339
- },
116
+ "output_type": "execute_result"
117
+ }
118
+ ],
119
+ "source": [
120
+ "samples = Array.new(10).map.with_index{|d,i| 'cat'+i.to_s}\n",
121
+ "x=[];y=[];home=[]\n",
122
+ "10.times do\n",
123
+ " x.push(5*rand)\n",
124
+ " y.push(5*rand)\n",
125
+ "end\n",
126
+ "df = Nyaplot::DataFrame.new({x:x,y:y,name:samples})\n",
127
+ "df"
128
+ ]
129
+ },
130
+ {
131
+ "cell_type": "code",
132
+ "execution_count": 3,
133
+ "metadata": {
134
+ "collapsed": false
135
+ },
136
+ "outputs": [
340
137
  {
341
- "cell_type": "code",
342
- "collapsed": false,
343
- "input": [
344
- "sc.color(colors)\n",
345
- "sc.fill_by(:home)\n",
346
- "plot.show"
347
- ],
348
- "language": "python",
138
+ "data": {
139
+ "text/plain": [
140
+ "#<Nyaplot::Diagram:0x00000001aa4640 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y}, :data=>\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"}, @xrange=[0.1024998687651274, 4.637112398516696], @yrange=[0.7786874328736609, 4.286194230558136]>"
141
+ ]
142
+ },
143
+ "execution_count": 3,
349
144
  "metadata": {},
350
- "outputs": [
351
- {
352
- "html": [
353
- "<div id='vis-f8bd1e30-15f8-41cd-bd26-ce1b65976a1f'></div>\n",
354
- "<script>\n",
355
- "(function(){\n",
356
- " var render = function(){\n",
357
- " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\",\"home\"],\"color\":[\"rgb(102,194,165)\",\"rgb(252,141,98)\",\"rgb(141,160,203)\",\"rgb(231,138,195)\",\"rgb(166,216,84)\",\"rgb(255,217,47)\",\"rgb(229,196,148)\",\"rgb(179,179,179)\"],\"fill_by\":\"home\"},\"data\":\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.09192346825461384,4.523075237278958],\"yrange\":[0.2724593604033648,4.3849875032095715]}}],\"data\":{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\":[{\"x\":4.484045721238493,\"y\":1.4236755629461113,\"name\":\"cat0\",\"home\":\"Puretoria\"},{\"x\":0.09192346825461384,\"y\":3.859486471834251,\"name\":\"cat1\",\"home\":\"London\"},{\"x\":2.7691211926797203,\"y\":0.2724593604033648,\"name\":\"cat2\",\"home\":\"London\"},{\"x\":3.790577538193376,\"y\":4.3849875032095715,\"name\":\"cat3\",\"home\":\"London\"},{\"x\":3.075663771695602,\"y\":1.4208854855110642,\"name\":\"cat4\",\"home\":\"Kyoto\"},{\"x\":1.0768103258740274,\"y\":1.3575402862086254,\"name\":\"cat5\",\"home\":\"Kyoto\"},{\"x\":1.7266282564027458,\"y\":2.061477073499303,\"name\":\"cat6\",\"home\":\"Puretoria\"},{\"x\":3.0954512252218382,\"y\":0.3593608483818478,\"name\":\"cat7\",\"home\":\"Puretoria\"},{\"x\":2.7941521911455696,\"y\":0.4127745317214565,\"name\":\"cat8\",\"home\":\"Los Angeles\"},{\"x\":4.523075237278958,\"y\":2.2397417984244443,\"name\":\"cat9\",\"home\":\"Los Angeles\"}]},\"extension\":[]}\n",
358
- " Nyaplot.core.parse(model, '#vis-f8bd1e30-15f8-41cd-bd26-ce1b65976a1f');\n",
359
- " };\n",
360
- " if(window['Nyaplot']==undefined){\n",
361
- " window.addEventListener('load_nyaplot', render, false);\n",
362
- "\treturn;\n",
363
- " } else {\n",
364
- " render();\n",
365
- " }\n",
366
- "})();\n",
367
- "</script>\n"
368
- ],
369
- "metadata": {},
370
- "output_type": "pyout",
371
- "prompt_number": 9,
372
- "text": [
373
- "#<Nyaplot::Frame:0xb97cccac @properties={:panes=>[#<Nyaplot::Plot:0xb930e2c4 @properties={:diagrams=>[#<Nyaplot::Diagram:0xb930de14 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name, :home], :color=>#<Nyaplot::Color:0xb9793e0c @source=[\"rgb(102,194,165)\", \"rgb(252,141,98)\", \"rgb(141,160,203)\", \"rgb(231,138,195)\", \"rgb(166,216,84)\", \"rgb(255,217,47)\", \"rgb(229,196,148)\", \"rgb(179,179,179)\"]>, :fill_by=>:home}, :data=>\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}, @xrange=[0.09192346825461384, 4.523075237278958], @yrange=[0.2724593604033648, 4.3849875032095715]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.09192346825461384, 4.523075237278958], :yrange=>[0.2724593604033648, 4.3849875032095715]}}>], :data=>{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"=>#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\", :home=>\"Puretoria\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\", :home=>\"London\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\", :home=>\"London\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\", :home=>\"London\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\", :home=>\"Kyoto\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\", :home=>\"Kyoto\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\", :home=>\"Puretoria\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\", :home=>\"Los Angeles\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\", :home=>\"Los Angeles\"}]>}, :extension=>[]}>"
374
- ]
375
- }
376
- ],
377
- "prompt_number": 9
378
- },
145
+ "output_type": "execute_result"
146
+ }
147
+ ],
148
+ "source": [
149
+ "plot = Nyaplot::Plot.new\n",
150
+ "plot.x_label(\"weight [kg]\")\n",
151
+ "plot.y_label(\"height [m]\")\n",
152
+ "sc = plot.add_with_df(df, :scatter, :x, :y)"
153
+ ]
154
+ },
155
+ {
156
+ "cell_type": "code",
157
+ "execution_count": 4,
158
+ "metadata": {
159
+ "collapsed": false
160
+ },
161
+ "outputs": [
379
162
  {
380
- "cell_type": "markdown",
163
+ "data": {
164
+ "text/html": [
165
+ "<div id='vis-36931a27-2b76-480b-9422-4f93a61a222b'></div>\n",
166
+ "<script>\n",
167
+ "(function(){\n",
168
+ " var render = function(){\n",
169
+ " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\"},\"data\":\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.1024998687651274,4.637112398516696],\"yrange\":[0.7786874328736609,4.286194230558136]}}],\"data\":{\"ba3ffbe6-5069-4f05-a16c-c75d33121599\":[{\"x\":2.533836113916067,\"y\":2.631899474983983,\"name\":\"cat0\"},{\"x\":0.1024998687651274,\"y\":1.545418909093887,\"name\":\"cat1\"},{\"x\":3.7461048248377695,\"y\":2.030734135218859,\"name\":\"cat2\"},{\"x\":2.682614237604856,\"y\":3.123632569213127,\"name\":\"cat3\"},{\"x\":2.9896303529418993,\"y\":2.207080541884825,\"name\":\"cat4\"},{\"x\":1.6887400962344323,\"y\":2.8767628395210614,\"name\":\"cat5\"},{\"x\":2.9320767913177077,\"y\":3.8545594841670985,\"name\":\"cat6\"},{\"x\":1.5212437682212843,\"y\":4.286194230558136,\"name\":\"cat7\"},{\"x\":0.26379655576528716,\"y\":0.7786874328736609,\"name\":\"cat8\"},{\"x\":4.637112398516696,\"y\":2.6885733522950144,\"name\":\"cat9\"}]},\"extension\":[]}\n",
170
+ " var id_name = '#vis-36931a27-2b76-480b-9422-4f93a61a222b';\n",
171
+ " Nyaplot.core.parse(model, id_name);\n",
172
+ "\n",
173
+ " require(['downloadable'], function(downloadable){\n",
174
+ " var svg = d3.select(id_name).select(\"svg\");\n",
175
+ "\t if(!svg.empty())\n",
176
+ "\t svg.call(downloadable().filename('fig'));\n",
177
+ "\t});\n",
178
+ " };\n",
179
+ " if(window['Nyaplot']==undefined){\n",
180
+ " window.addEventListener('load_nyaplot', render, false);\n",
181
+ "\treturn;\n",
182
+ " } else {\n",
183
+ " render();\n",
184
+ " }\n",
185
+ "})();\n",
186
+ "</script>\n"
187
+ ],
188
+ "text/plain": [
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+ "#<Nyaplot::Frame:0x000000019ef150 @properties={:panes=>[#<Nyaplot::Plot:0x00000001aa4960 @properties={:diagrams=>[#<Nyaplot::Diagram:0x00000001aa4640 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y}, :data=>\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"}, @xrange=[0.1024998687651274, 4.637112398516696], @yrange=[0.7786874328736609, 4.286194230558136]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.1024998687651274, 4.637112398516696], :yrange=>[0.7786874328736609, 4.286194230558136]}}>], :data=>{\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"=>#<Nyaplot::DataFrame:0x00000001af5090 @name=\"ba3ffbe6-5069-4f05-a16c-c75d33121599\", @rows=[{:x=>2.533836113916067, :y=>2.631899474983983, :name=>\"cat0\"}, {:x=>0.1024998687651274, :y=>1.545418909093887, :name=>\"cat1\"}, {:x=>3.7461048248377695, :y=>2.030734135218859, :name=>\"cat2\"}, {:x=>2.682614237604856, :y=>3.123632569213127, :name=>\"cat3\"}, {:x=>2.9896303529418993, :y=>2.207080541884825, :name=>\"cat4\"}, {:x=>1.6887400962344323, :y=>2.8767628395210614, :name=>\"cat5\"}, {:x=>2.9320767913177077, :y=>3.8545594841670985, :name=>\"cat6\"}, {:x=>1.5212437682212843, :y=>4.286194230558136, :name=>\"cat7\"}, {:x=>0.26379655576528716, :y=>0.7786874328736609, :name=>\"cat8\"}, {:x=>4.637112398516696, :y=>2.6885733522950144, :name=>\"cat9\"}]>}, :extension=>[]}>"
190
+ ]
191
+ },
192
+ "execution_count": 4,
381
193
  "metadata": {},
382
- "source": [
383
- "Use `shape_by` method to change shape according to value in a column."
384
- ]
385
- },
194
+ "output_type": "execute_result"
195
+ }
196
+ ],
197
+ "source": [
198
+ "plot.show"
199
+ ]
200
+ },
201
+ {
202
+ "cell_type": "markdown",
203
+ "metadata": {},
204
+ "source": [
205
+ "The plot above is not contain `name` information, so add it into tool-tip. Use `tooltip_contents` to add contents to tool-tip."
206
+ ]
207
+ },
208
+ {
209
+ "cell_type": "code",
210
+ "execution_count": 5,
211
+ "metadata": {
212
+ "collapsed": false
213
+ },
214
+ "outputs": [
386
215
  {
387
- "cell_type": "code",
388
- "collapsed": false,
389
- "input": [
390
- "sc.color(colors)\n",
391
- "sc.shape_by(:home)\n",
392
- "plot.show"
393
- ],
394
- "language": "python",
216
+ "data": {
217
+ "text/html": [
218
+ "<div id='vis-6e601a1e-2ec4-425f-a62e-55f2f27390b1'></div>\n",
219
+ "<script>\n",
220
+ "(function(){\n",
221
+ " var render = function(){\n",
222
+ " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\"]},\"data\":\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.1024998687651274,4.637112398516696],\"yrange\":[0.7786874328736609,4.286194230558136]}}],\"data\":{\"ba3ffbe6-5069-4f05-a16c-c75d33121599\":[{\"x\":2.533836113916067,\"y\":2.631899474983983,\"name\":\"cat0\"},{\"x\":0.1024998687651274,\"y\":1.545418909093887,\"name\":\"cat1\"},{\"x\":3.7461048248377695,\"y\":2.030734135218859,\"name\":\"cat2\"},{\"x\":2.682614237604856,\"y\":3.123632569213127,\"name\":\"cat3\"},{\"x\":2.9896303529418993,\"y\":2.207080541884825,\"name\":\"cat4\"},{\"x\":1.6887400962344323,\"y\":2.8767628395210614,\"name\":\"cat5\"},{\"x\":2.9320767913177077,\"y\":3.8545594841670985,\"name\":\"cat6\"},{\"x\":1.5212437682212843,\"y\":4.286194230558136,\"name\":\"cat7\"},{\"x\":0.26379655576528716,\"y\":0.7786874328736609,\"name\":\"cat8\"},{\"x\":4.637112398516696,\"y\":2.6885733522950144,\"name\":\"cat9\"}]},\"extension\":[]}\n",
223
+ " var id_name = '#vis-6e601a1e-2ec4-425f-a62e-55f2f27390b1';\n",
224
+ " Nyaplot.core.parse(model, id_name);\n",
225
+ "\n",
226
+ " require(['downloadable'], function(downloadable){\n",
227
+ " var svg = d3.select(id_name).select(\"svg\");\n",
228
+ "\t if(!svg.empty())\n",
229
+ "\t svg.call(downloadable().filename('fig'));\n",
230
+ "\t});\n",
231
+ " };\n",
232
+ " if(window['Nyaplot']==undefined){\n",
233
+ " window.addEventListener('load_nyaplot', render, false);\n",
234
+ "\treturn;\n",
235
+ " } else {\n",
236
+ " render();\n",
237
+ " }\n",
238
+ "})();\n",
239
+ "</script>\n"
240
+ ],
241
+ "text/plain": [
242
+ "#<Nyaplot::Frame:0x000000019cb700 @properties={:panes=>[#<Nyaplot::Plot:0x00000001aa4960 @properties={:diagrams=>[#<Nyaplot::Diagram:0x00000001aa4640 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name]}, :data=>\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"}, @xrange=[0.1024998687651274, 4.637112398516696], @yrange=[0.7786874328736609, 4.286194230558136]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.1024998687651274, 4.637112398516696], :yrange=>[0.7786874328736609, 4.286194230558136]}}>], :data=>{\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"=>#<Nyaplot::DataFrame:0x00000001af5090 @name=\"ba3ffbe6-5069-4f05-a16c-c75d33121599\", @rows=[{:x=>2.533836113916067, :y=>2.631899474983983, :name=>\"cat0\"}, {:x=>0.1024998687651274, :y=>1.545418909093887, :name=>\"cat1\"}, {:x=>3.7461048248377695, :y=>2.030734135218859, :name=>\"cat2\"}, {:x=>2.682614237604856, :y=>3.123632569213127, :name=>\"cat3\"}, {:x=>2.9896303529418993, :y=>2.207080541884825, :name=>\"cat4\"}, {:x=>1.6887400962344323, :y=>2.8767628395210614, :name=>\"cat5\"}, {:x=>2.9320767913177077, :y=>3.8545594841670985, :name=>\"cat6\"}, {:x=>1.5212437682212843, :y=>4.286194230558136, :name=>\"cat7\"}, {:x=>0.26379655576528716, :y=>0.7786874328736609, :name=>\"cat8\"}, {:x=>4.637112398516696, :y=>2.6885733522950144, :name=>\"cat9\"}]>}, :extension=>[]}>"
243
+ ]
244
+ },
245
+ "execution_count": 5,
395
246
  "metadata": {},
396
- "outputs": [
397
- {
398
- "html": [
399
- "<div id='vis-c7f1d672-d5b7-4ba1-b8f8-9e52867f93bf'></div>\n",
400
- "<script>\n",
401
- "(function(){\n",
402
- " var render = function(){\n",
403
- " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\",\"home\"],\"color\":[\"rgb(102,194,165)\",\"rgb(252,141,98)\",\"rgb(141,160,203)\",\"rgb(231,138,195)\",\"rgb(166,216,84)\",\"rgb(255,217,47)\",\"rgb(229,196,148)\",\"rgb(179,179,179)\"],\"fill_by\":\"home\",\"shape_by\":\"home\"},\"data\":\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.09192346825461384,4.523075237278958],\"yrange\":[0.2724593604033648,4.3849875032095715]}}],\"data\":{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\":[{\"x\":4.484045721238493,\"y\":1.4236755629461113,\"name\":\"cat0\",\"home\":\"Puretoria\"},{\"x\":0.09192346825461384,\"y\":3.859486471834251,\"name\":\"cat1\",\"home\":\"London\"},{\"x\":2.7691211926797203,\"y\":0.2724593604033648,\"name\":\"cat2\",\"home\":\"London\"},{\"x\":3.790577538193376,\"y\":4.3849875032095715,\"name\":\"cat3\",\"home\":\"London\"},{\"x\":3.075663771695602,\"y\":1.4208854855110642,\"name\":\"cat4\",\"home\":\"Kyoto\"},{\"x\":1.0768103258740274,\"y\":1.3575402862086254,\"name\":\"cat5\",\"home\":\"Kyoto\"},{\"x\":1.7266282564027458,\"y\":2.061477073499303,\"name\":\"cat6\",\"home\":\"Puretoria\"},{\"x\":3.0954512252218382,\"y\":0.3593608483818478,\"name\":\"cat7\",\"home\":\"Puretoria\"},{\"x\":2.7941521911455696,\"y\":0.4127745317214565,\"name\":\"cat8\",\"home\":\"Los Angeles\"},{\"x\":4.523075237278958,\"y\":2.2397417984244443,\"name\":\"cat9\",\"home\":\"Los Angeles\"}]},\"extension\":[]}\n",
404
- " Nyaplot.core.parse(model, '#vis-c7f1d672-d5b7-4ba1-b8f8-9e52867f93bf');\n",
405
- " };\n",
406
- " if(window['Nyaplot']==undefined){\n",
407
- " window.addEventListener('load_nyaplot', render, false);\n",
408
- "\treturn;\n",
409
- " } else {\n",
410
- " render();\n",
411
- " }\n",
412
- "})();\n",
413
- "</script>\n"
414
- ],
415
- "metadata": {},
416
- "output_type": "pyout",
417
- "prompt_number": 10,
418
- "text": [
419
- "#<Nyaplot::Frame:0xb98b1348 @properties={:panes=>[#<Nyaplot::Plot:0xb930e2c4 @properties={:diagrams=>[#<Nyaplot::Diagram:0xb930de14 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name, :home], :color=>#<Nyaplot::Color:0xb9793e0c @source=[\"rgb(102,194,165)\", \"rgb(252,141,98)\", \"rgb(141,160,203)\", \"rgb(231,138,195)\", \"rgb(166,216,84)\", \"rgb(255,217,47)\", \"rgb(229,196,148)\", \"rgb(179,179,179)\"]>, :fill_by=>:home, :shape_by=>:home}, :data=>\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"}, @xrange=[0.09192346825461384, 4.523075237278958], @yrange=[0.2724593604033648, 4.3849875032095715]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.09192346825461384, 4.523075237278958], :yrange=>[0.2724593604033648, 4.3849875032095715]}}>], :data=>{\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\"=>#<Nyaplot::DataFrame:0xba0db230 @name=\"d9b05d19-7b1b-411b-bbc9-eb0e2324b8f6\", @rows=[{:x=>4.484045721238493, :y=>1.4236755629461113, :name=>\"cat0\", :home=>\"Puretoria\"}, {:x=>0.09192346825461384, :y=>3.859486471834251, :name=>\"cat1\", :home=>\"London\"}, {:x=>2.7691211926797203, :y=>0.2724593604033648, :name=>\"cat2\", :home=>\"London\"}, {:x=>3.790577538193376, :y=>4.3849875032095715, :name=>\"cat3\", :home=>\"London\"}, {:x=>3.075663771695602, :y=>1.4208854855110642, :name=>\"cat4\", :home=>\"Kyoto\"}, {:x=>1.0768103258740274, :y=>1.3575402862086254, :name=>\"cat5\", :home=>\"Kyoto\"}, {:x=>1.7266282564027458, :y=>2.061477073499303, :name=>\"cat6\", :home=>\"Puretoria\"}, {:x=>3.0954512252218382, :y=>0.3593608483818478, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>2.7941521911455696, :y=>0.4127745317214565, :name=>\"cat8\", :home=>\"Los Angeles\"}, {:x=>4.523075237278958, :y=>2.2397417984244443, :name=>\"cat9\", :home=>\"Los Angeles\"}]>}, :extension=>[]}>"
420
- ]
421
- }
422
- ],
423
- "prompt_number": 10
424
- },
247
+ "output_type": "execute_result"
248
+ }
249
+ ],
250
+ "source": [
251
+ "sc.tooltip_contents([:name])\n",
252
+ "plot.show"
253
+ ]
254
+ },
255
+ {
256
+ "cell_type": "markdown",
257
+ "metadata": {},
258
+ "source": [
259
+ "Tool-tip can include multiple lines, but the DataFrame has only three columns and that's not enough to add more line to tool-tip. Let's add `home` column to it."
260
+ ]
261
+ },
262
+ {
263
+ "cell_type": "code",
264
+ "execution_count": 6,
265
+ "metadata": {
266
+ "collapsed": false
267
+ },
268
+ "outputs": [
425
269
  {
426
- "cell_type": "heading",
427
- "level": 2,
270
+ "data": {
271
+ "text/html": [
272
+ "<table><tr><th>x</th><th>y</th><th>name</th><th>home</th></tr><tr><td>2.533836113916067</td><td>2.631899474983983</td><td>cat0</td><td>Kyoto</td></tr><tr><td>0.1024998687651274</td><td>1.545418909093887</td><td>cat1</td><td>Puretoria</td></tr><tr><td>3.7461048248377695</td><td>2.030734135218859</td><td>cat2</td><td>Puretoria</td></tr><tr><td>2.682614237604856</td><td>3.123632569213127</td><td>cat3</td><td>Los Angeles</td></tr><tr><td>2.9896303529418993</td><td>2.207080541884825</td><td>cat4</td><td>Los Angeles</td></tr><tr><td>1.6887400962344323</td><td>2.8767628395210614</td><td>cat5</td><td>Kyoto</td></tr><tr><td>2.9320767913177077</td><td>3.8545594841670985</td><td>cat6</td><td>Kyoto</td></tr><tr><td>1.5212437682212843</td><td>4.286194230558136</td><td>cat7</td><td>Puretoria</td></tr><tr><td>0.26379655576528716</td><td>0.7786874328736609</td><td>cat8</td><td>London</td></tr><tr><td>4.637112398516696</td><td>2.6885733522950144</td><td>cat9</td><td>Kyoto</td></tr></table>"
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+ ],
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+ "text/plain": [
275
+ "#<Nyaplot::DataFrame:0x00000001af5090 @name=\"ba3ffbe6-5069-4f05-a16c-c75d33121599\", @rows=[{:x=>2.533836113916067, :y=>2.631899474983983, :name=>\"cat0\", :home=>\"Kyoto\"}, {:x=>0.1024998687651274, :y=>1.545418909093887, :name=>\"cat1\", :home=>\"Puretoria\"}, {:x=>3.7461048248377695, :y=>2.030734135218859, :name=>\"cat2\", :home=>\"Puretoria\"}, {:x=>2.682614237604856, :y=>3.123632569213127, :name=>\"cat3\", :home=>\"Los Angeles\"}, {:x=>2.9896303529418993, :y=>2.207080541884825, :name=>\"cat4\", :home=>\"Los Angeles\"}, {:x=>1.6887400962344323, :y=>2.8767628395210614, :name=>\"cat5\", :home=>\"Kyoto\"}, {:x=>2.9320767913177077, :y=>3.8545594841670985, :name=>\"cat6\", :home=>\"Kyoto\"}, {:x=>1.5212437682212843, :y=>4.286194230558136, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>0.26379655576528716, :y=>0.7786874328736609, :name=>\"cat8\", :home=>\"London\"}, {:x=>4.637112398516696, :y=>2.6885733522950144, :name=>\"cat9\", :home=>\"Kyoto\"}]>"
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+ ]
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+ },
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+ "execution_count": 6,
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  "metadata": {},
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- "source": [
430
- "Case 2: Multiple panes"
431
- ]
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- },
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+ "output_type": "execute_result"
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+ }
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+ ],
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+ "source": [
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+ "address = ['London', 'Kyoto', 'Los Angeles', 'Puretoria']\n",
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+ "home = Array.new(10,'').map{|d| address.clone.sample}\n",
286
+ "df.home = home\n",
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+ "df"
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+ ]
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+ },
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+ {
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+ "cell_type": "code",
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+ "execution_count": 7,
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+ "metadata": {
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+ "collapsed": false
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+ },
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+ "outputs": [
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  {
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- "cell_type": "markdown",
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+ "data": {
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+ "text/html": [
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+ "<div id='vis-e0b8564a-5341-4a17-9988-bc876b8ec50c'></div>\n",
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+ "<script>\n",
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+ "(function(){\n",
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+ " var render = function(){\n",
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+ " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\",\"home\"]},\"data\":\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.1024998687651274,4.637112398516696],\"yrange\":[0.7786874328736609,4.286194230558136]}}],\"data\":{\"ba3ffbe6-5069-4f05-a16c-c75d33121599\":[{\"x\":2.533836113916067,\"y\":2.631899474983983,\"name\":\"cat0\",\"home\":\"Kyoto\"},{\"x\":0.1024998687651274,\"y\":1.545418909093887,\"name\":\"cat1\",\"home\":\"Puretoria\"},{\"x\":3.7461048248377695,\"y\":2.030734135218859,\"name\":\"cat2\",\"home\":\"Puretoria\"},{\"x\":2.682614237604856,\"y\":3.123632569213127,\"name\":\"cat3\",\"home\":\"Los Angeles\"},{\"x\":2.9896303529418993,\"y\":2.207080541884825,\"name\":\"cat4\",\"home\":\"Los Angeles\"},{\"x\":1.6887400962344323,\"y\":2.8767628395210614,\"name\":\"cat5\",\"home\":\"Kyoto\"},{\"x\":2.9320767913177077,\"y\":3.8545594841670985,\"name\":\"cat6\",\"home\":\"Kyoto\"},{\"x\":1.5212437682212843,\"y\":4.286194230558136,\"name\":\"cat7\",\"home\":\"Puretoria\"},{\"x\":0.26379655576528716,\"y\":0.7786874328736609,\"name\":\"cat8\",\"home\":\"London\"},{\"x\":4.637112398516696,\"y\":2.6885733522950144,\"name\":\"cat9\",\"home\":\"Kyoto\"}]},\"extension\":[]}\n",
305
+ " var id_name = '#vis-e0b8564a-5341-4a17-9988-bc876b8ec50c';\n",
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+ " Nyaplot.core.parse(model, id_name);\n",
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+ "\n",
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+ " require(['downloadable'], function(downloadable){\n",
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+ " var svg = d3.select(id_name).select(\"svg\");\n",
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+ "\t if(!svg.empty())\n",
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+ "\t svg.call(downloadable().filename('fig'));\n",
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+ "\t});\n",
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+ " };\n",
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+ " if(window['Nyaplot']==undefined){\n",
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+ " window.addEventListener('load_nyaplot', render, false);\n",
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+ "\treturn;\n",
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+ " } else {\n",
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+ " render();\n",
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+ " }\n",
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+ "})();\n",
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+ "</script>\n"
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+ ],
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+ "text/plain": [
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+ "#<Nyaplot::Frame:0x0000000177cf08 @properties={:panes=>[#<Nyaplot::Plot:0x00000001aa4960 @properties={:diagrams=>[#<Nyaplot::Diagram:0x00000001aa4640 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name, :home]}, :data=>\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"}, @xrange=[0.1024998687651274, 4.637112398516696], @yrange=[0.7786874328736609, 4.286194230558136]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.1024998687651274, 4.637112398516696], :yrange=>[0.7786874328736609, 4.286194230558136]}}>], :data=>{\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"=>#<Nyaplot::DataFrame:0x00000001af5090 @name=\"ba3ffbe6-5069-4f05-a16c-c75d33121599\", @rows=[{:x=>2.533836113916067, :y=>2.631899474983983, :name=>\"cat0\", :home=>\"Kyoto\"}, {:x=>0.1024998687651274, :y=>1.545418909093887, :name=>\"cat1\", :home=>\"Puretoria\"}, {:x=>3.7461048248377695, :y=>2.030734135218859, :name=>\"cat2\", :home=>\"Puretoria\"}, {:x=>2.682614237604856, :y=>3.123632569213127, :name=>\"cat3\", :home=>\"Los Angeles\"}, {:x=>2.9896303529418993, :y=>2.207080541884825, :name=>\"cat4\", :home=>\"Los Angeles\"}, {:x=>1.6887400962344323, :y=>2.8767628395210614, :name=>\"cat5\", :home=>\"Kyoto\"}, {:x=>2.9320767913177077, :y=>3.8545594841670985, :name=>\"cat6\", :home=>\"Kyoto\"}, {:x=>1.5212437682212843, :y=>4.286194230558136, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>0.26379655576528716, :y=>0.7786874328736609, :name=>\"cat8\", :home=>\"London\"}, {:x=>4.637112398516696, :y=>2.6885733522950144, :name=>\"cat9\", :home=>\"Kyoto\"}]>}, :extension=>[]}>"
325
+ ]
326
+ },
327
+ "execution_count": 7,
435
328
  "metadata": {},
436
- "source": [
437
- "DataFrame is also useful when visualizing data in multiple panes. Let's create plot from data about mutation. \n",
438
- "First, fetch data from csv file. (All data used in this Tutorial is included in Nyaplot's repository: /examples/notebook/data/*)"
439
- ]
440
- },
329
+ "output_type": "execute_result"
330
+ }
331
+ ],
332
+ "source": [
333
+ "sc.tooltip_contents([:name, :home])\n",
334
+ "plot.show"
335
+ ]
336
+ },
337
+ {
338
+ "cell_type": "markdown",
339
+ "metadata": {},
340
+ "source": [
341
+ "Then, fill points on the scatter in different colors according to 'home' column. To do so, specify column name by `fill_by` method."
342
+ ]
343
+ },
344
+ {
345
+ "cell_type": "code",
346
+ "execution_count": 9,
347
+ "metadata": {
348
+ "collapsed": false
349
+ },
350
+ "outputs": [
441
351
  {
442
- "cell_type": "code",
443
- "collapsed": false,
444
- "input": [
445
- "path = File.expand_path(\"../data/first.tab\", __FILE__)\n",
446
- "df = Nyaplot::DataFrame.from_csv(path, sep=\"\\t\")"
447
- ],
448
- "language": "python",
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+ "data": {
353
+ "text/html": [
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+ "<table><tr><th>rgb(141,211,199)</th><th>rgb(255,255,179)</th><th>rgb(190,186,218)</th><th>rgb(251,128,114)</th><th>rgb(128,177,211)</th><th>rgb(253,180,98)</th><th>rgb(179,222,105)</th><th>rgb(252,205,229)</th><th>rgb(217,217,217)</th></tr><tr><td style=\"background-color:rgb(141,211,199);\">&nbsp;</td><td style=\"background-color:rgb(255,255,179);\">&nbsp;</td><td style=\"background-color:rgb(190,186,218);\">&nbsp;</td><td style=\"background-color:rgb(251,128,114);\">&nbsp;</td><td style=\"background-color:rgb(128,177,211);\">&nbsp;</td><td style=\"background-color:rgb(253,180,98);\">&nbsp;</td><td style=\"background-color:rgb(179,222,105);\">&nbsp;</td><td style=\"background-color:rgb(252,205,229);\">&nbsp;</td><td style=\"background-color:rgb(217,217,217);\">&nbsp;</td></tr></table>"
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+ ],
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+ "text/plain": [
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+ "#<Nyaplot::Color:0x00000001f063a0 @source=[\"rgb(141,211,199)\", \"rgb(255,255,179)\", \"rgb(190,186,218)\", \"rgb(251,128,114)\", \"rgb(128,177,211)\", \"rgb(253,180,98)\", \"rgb(179,222,105)\", \"rgb(252,205,229)\", \"rgb(217,217,217)\"]>"
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+ ]
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+ },
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+ "execution_count": 9,
449
361
  "metadata": {},
450
- "outputs": [
451
- {
452
- "html": [
453
- "<table><tr><th>mutation</th><th>blood</th><th>set1</th><th>set2</th><th>set3</th><th>set12</th><th>set21</th><th>set31</th></tr><tr><td>G>A</td><td>0.0</td><td>0.019230769230769232</td><td>0.0</td><td>0.48214285714285715</td><td>0.0</td><td>0.0</td><td>0.4782608695652174</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42592592592592593</td><td>0.0</td><td>0.0</td><td>0.375</td><td>0.0</td><td>0.0</td></tr><tr><td>C>G</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.525</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.1935483870967742</td><td>0.0</td><td>0.0</td><td>0.4666666666666667</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.08333333333333333</td><td>0.0</td><td>0.0</td><td>0.5161290322580645</td><td>0.0</td></tr><tr><td>G>T</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.4444444444444444</td><td>0.0</td><td>0.0</td></tr><tr><td>C>G</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.4</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.03333333333333333</td><td>0.0</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td></tr><tr><td>A>C</td><td>0.0</td><td>0.6153846153846154</td><td>0.0</td><td>0.0</td><td>0.5925925925925926</td><td>0.0</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.32</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.4230769230769231</td><td>0.0</td></tr><tr><td>T>A</td><td>0.0</td><td>0.525</td><td>0.0</td><td>0.0</td><td>0.5277777777777778</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td><td>0.0</td><td>0.6666666666666666</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.5</td><td>0.03225806451612903</td></tr><tr><td>T>C</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.3793103448275862</td></tr><tr><td>C>T</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.45714285714285713</td><td>0.0</td><td>0.0</td><td>0.46875</td></tr><tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr><tr><td>A>T</td><td>0.0</td><td>0.4716981132075472</td><td>0.0</td><td>0.014492753623188406</td><td>0.3142857142857143</td><td>0.0</td><td>0.0</td></tr></table>"
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- ],
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- "metadata": {},
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- "output_type": "pyout",
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- "prompt_number": 11,
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- "text": [
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- "#<Nyaplot::DataFrame:0xba532810 @name=\"1c1e8c6a-1256-416b-a45e-961a0eb39bd5\", @rows=[{:mutation=>\"G>A\", :blood=>0.0, :set1=>0.019230769230769232, :set2=>0.0, :set3=>0.48214285714285715, :set12=>0.0, :set21=>0.0, :set31=>0.4782608695652174}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.42592592592592593, :set2=>0.0, :set3=>0.0, :set12=>0.375, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>G\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.525, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.1935483870967742, :set3=>0.0, :set12=>0.0, :set21=>0.4666666666666667, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.08333333333333333, :set3=>0.0, :set12=>0.0, :set21=>0.5161290322580645, :set31=>0.0}, {:mutation=>\"G>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.4444444444444444, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>G\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.0, :set31=>0.4}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.03333333333333333, :set3=>0.0, :set12=>0.0, :set21=>0.42857142857142855, :set31=>0.0}, {:mutation=>\"A>C\", :blood=>0.0, :set1=>0.6153846153846154, :set2=>0.0, :set3=>0.0, :set12=>0.5925925925925926, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.32, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.4230769230769231, :set31=>0.0}, {:mutation=>\"T>A\", :blood=>0.0, :set1=>0.525, :set2=>0.0, :set3=>0.0, :set12=>0.5277777777777778, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.42857142857142855, :set2=>0.0, :set3=>0.0, :set12=>0.6666666666666666, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.5, :set31=>0.03225806451612903}, {:mutation=>\"T>C\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, 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:blood=>0.0, :set1=>0.0, :set2=>0.58, :set3=>0.0, :set12=>0.0, :set21=>0.5862068965517241, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.5555555555555556, :set12=>0.0, :set21=>0.0, :set31=>0.5185185185185185}, {:mutation=>\"G>T\", :blood=>0.0, :set1=>0.021739130434782608, :set2=>0.0, :set3=>0.02631578947368421, :set12=>0.3103448275862069, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>C\", :blood=>0.0, :set1=>0.0, :set2=>0.25, :set3=>0.0, :set12=>0.0, :set21=>0.7741935483870968, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.48484848484848486, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.047619047619047616, :set2=>0.0, :set3=>0.023809523809523808, :set12=>0.759493670886076, :set21=>0.5841584158415841, :set31=>0.47126436781609193}, {:mutation=>\"A>C\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.5833333333333334, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>G\", 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460
- ]
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- }
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- ],
463
- "prompt_number": 11
464
- },
362
+ "output_type": "execute_result"
363
+ }
364
+ ],
365
+ "source": [
366
+ "colors = Nyaplot::Colors.qual"
367
+ ]
368
+ },
369
+ {
370
+ "cell_type": "code",
371
+ "execution_count": 10,
372
+ "metadata": {
373
+ "collapsed": false
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+ },
375
+ "outputs": [
465
376
  {
466
- "cell_type": "markdown",
377
+ "data": {
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+ "text/html": [
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+ "<div id='vis-7aba36ef-6e4a-45e3-a800-c926dcad0b83'></div>\n",
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+ "<script>\n",
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+ "(function(){\n",
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+ " var render = function(){\n",
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+ " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\",\"home\"],\"color\":[\"rgb(141,211,199)\",\"rgb(255,255,179)\",\"rgb(190,186,218)\",\"rgb(251,128,114)\",\"rgb(128,177,211)\",\"rgb(253,180,98)\",\"rgb(179,222,105)\",\"rgb(252,205,229)\",\"rgb(217,217,217)\"],\"fill_by\":\"home\"},\"data\":\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.1024998687651274,4.637112398516696],\"yrange\":[0.7786874328736609,4.286194230558136]}}],\"data\":{\"ba3ffbe6-5069-4f05-a16c-c75d33121599\":[{\"x\":2.533836113916067,\"y\":2.631899474983983,\"name\":\"cat0\",\"home\":\"Kyoto\"},{\"x\":0.1024998687651274,\"y\":1.545418909093887,\"name\":\"cat1\",\"home\":\"Puretoria\"},{\"x\":3.7461048248377695,\"y\":2.030734135218859,\"name\":\"cat2\",\"home\":\"Puretoria\"},{\"x\":2.682614237604856,\"y\":3.123632569213127,\"name\":\"cat3\",\"home\":\"Los Angeles\"},{\"x\":2.9896303529418993,\"y\":2.207080541884825,\"name\":\"cat4\",\"home\":\"Los Angeles\"},{\"x\":1.6887400962344323,\"y\":2.8767628395210614,\"name\":\"cat5\",\"home\":\"Kyoto\"},{\"x\":2.9320767913177077,\"y\":3.8545594841670985,\"name\":\"cat6\",\"home\":\"Kyoto\"},{\"x\":1.5212437682212843,\"y\":4.286194230558136,\"name\":\"cat7\",\"home\":\"Puretoria\"},{\"x\":0.26379655576528716,\"y\":0.7786874328736609,\"name\":\"cat8\",\"home\":\"London\"},{\"x\":4.637112398516696,\"y\":2.6885733522950144,\"name\":\"cat9\",\"home\":\"Kyoto\"}]},\"extension\":[]}\n",
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+ " var id_name = '#vis-7aba36ef-6e4a-45e3-a800-c926dcad0b83';\n",
385
+ " Nyaplot.core.parse(model, id_name);\n",
386
+ "\n",
387
+ " require(['downloadable'], function(downloadable){\n",
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+ " var svg = d3.select(id_name).select(\"svg\");\n",
389
+ "\t if(!svg.empty())\n",
390
+ "\t svg.call(downloadable().filename('fig'));\n",
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+ "\t});\n",
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+ " };\n",
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+ " if(window['Nyaplot']==undefined){\n",
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+ " window.addEventListener('load_nyaplot', render, false);\n",
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+ "\treturn;\n",
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+ " } else {\n",
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+ " render();\n",
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+ " }\n",
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+ "})();\n",
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+ "</script>\n"
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+ ],
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+ "text/plain": [
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+ "#<Nyaplot::Frame:0x00000001efe178 @properties={:panes=>[#<Nyaplot::Plot:0x00000001aa4960 @properties={:diagrams=>[#<Nyaplot::Diagram:0x00000001aa4640 @properties={:type=>:scatter, :options=>{:x=>:x, :y=>:y, :tooltip_contents=>[:name, :home], :color=>#<Nyaplot::Color:0x00000001f063a0 @source=[\"rgb(141,211,199)\", \"rgb(255,255,179)\", \"rgb(190,186,218)\", \"rgb(251,128,114)\", \"rgb(128,177,211)\", \"rgb(253,180,98)\", \"rgb(179,222,105)\", \"rgb(252,205,229)\", \"rgb(217,217,217)\"]>, :fill_by=>:home}, :data=>\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"}, @xrange=[0.1024998687651274, 4.637112398516696], @yrange=[0.7786874328736609, 4.286194230558136]>], :options=>{:x_label=>\"weight [kg]\", :y_label=>\"height [m]\", :zoom=>true, :width=>700, :xrange=>[0.1024998687651274, 4.637112398516696], :yrange=>[0.7786874328736609, 4.286194230558136]}}>], :data=>{\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"=>#<Nyaplot::DataFrame:0x00000001af5090 @name=\"ba3ffbe6-5069-4f05-a16c-c75d33121599\", @rows=[{:x=>2.533836113916067, :y=>2.631899474983983, :name=>\"cat0\", :home=>\"Kyoto\"}, {:x=>0.1024998687651274, :y=>1.545418909093887, :name=>\"cat1\", :home=>\"Puretoria\"}, {:x=>3.7461048248377695, :y=>2.030734135218859, :name=>\"cat2\", :home=>\"Puretoria\"}, {:x=>2.682614237604856, :y=>3.123632569213127, :name=>\"cat3\", :home=>\"Los Angeles\"}, {:x=>2.9896303529418993, :y=>2.207080541884825, :name=>\"cat4\", :home=>\"Los Angeles\"}, {:x=>1.6887400962344323, :y=>2.8767628395210614, :name=>\"cat5\", :home=>\"Kyoto\"}, {:x=>2.9320767913177077, :y=>3.8545594841670985, :name=>\"cat6\", :home=>\"Kyoto\"}, {:x=>1.5212437682212843, :y=>4.286194230558136, :name=>\"cat7\", :home=>\"Puretoria\"}, {:x=>0.26379655576528716, :y=>0.7786874328736609, :name=>\"cat8\", :home=>\"London\"}, {:x=>4.637112398516696, :y=>2.6885733522950144, :name=>\"cat9\", :home=>\"Kyoto\"}]>}, :extension=>[]}>"
404
+ ]
405
+ },
406
+ "execution_count": 10,
467
407
  "metadata": {},
468
- "source": [
469
- "Now I want to plot **SET1** column, but it contains many zero cells. Then filter them out."
470
- ]
471
- },
408
+ "output_type": "execute_result"
409
+ }
410
+ ],
411
+ "source": [
412
+ "sc.color(colors)\n",
413
+ "sc.fill_by(:home)\n",
414
+ "plot.show"
415
+ ]
416
+ },
417
+ {
418
+ "cell_type": "markdown",
419
+ "metadata": {},
420
+ "source": [
421
+ "Use `shape_by` method to change shape according to value in a column."
422
+ ]
423
+ },
424
+ {
425
+ "cell_type": "code",
426
+ "execution_count": 11,
427
+ "metadata": {
428
+ "collapsed": false
429
+ },
430
+ "outputs": [
472
431
  {
473
- "cell_type": "code",
474
- "collapsed": false,
475
- "input": [
476
- "df.filter! {|row| row[:set1] != 0.0}\n",
477
- "df"
478
- ],
479
- "language": "python",
432
+ "data": {
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+ "text/html": [
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+ "<div id='vis-52ab2732-c589-49c5-b0a4-472a4a560316'></div>\n",
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+ "<script>\n",
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+ "(function(){\n",
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+ " var render = function(){\n",
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+ " var model = {\"panes\":[{\"diagrams\":[{\"type\":\"scatter\",\"options\":{\"x\":\"x\",\"y\":\"y\",\"tooltip_contents\":[\"name\",\"home\"],\"color\":[\"rgb(141,211,199)\",\"rgb(255,255,179)\",\"rgb(190,186,218)\",\"rgb(251,128,114)\",\"rgb(128,177,211)\",\"rgb(253,180,98)\",\"rgb(179,222,105)\",\"rgb(252,205,229)\",\"rgb(217,217,217)\"],\"fill_by\":\"home\",\"shape_by\":\"home\"},\"data\":\"ba3ffbe6-5069-4f05-a16c-c75d33121599\"}],\"options\":{\"x_label\":\"weight [kg]\",\"y_label\":\"height [m]\",\"zoom\":true,\"width\":700,\"xrange\":[0.1024998687651274,4.637112398516696],\"yrange\":[0.7786874328736609,4.286194230558136]}}],\"data\":{\"ba3ffbe6-5069-4f05-a16c-c75d33121599\":[{\"x\":2.533836113916067,\"y\":2.631899474983983,\"name\":\"cat0\",\"home\":\"Kyoto\"},{\"x\":0.1024998687651274,\"y\":1.545418909093887,\"name\":\"cat1\",\"home\":\"Puretoria\"},{\"x\":3.7461048248377695,\"y\":2.030734135218859,\"name\":\"cat2\",\"home\":\"Puretoria\"},{\"x\":2.682614237604856,\"y\":3.123632569213127,\"name\":\"cat3\",\"home\":\"Los Angeles\"},{\"x\":2.9896303529418993,\"y\":2.207080541884825,\"name\":\"cat4\",\"home\":\"Los Angeles\"},{\"x\":1.6887400962344323,\"y\":2.8767628395210614,\"name\":\"cat5\",\"home\":\"Kyoto\"},{\"x\":2.9320767913177077,\"y\":3.8545594841670985,\"name\":\"cat6\",\"home\":\"Kyoto\"},{\"x\":1.5212437682212843,\"y\":4.286194230558136,\"name\":\"cat7\",\"home\":\"Puretoria\"},{\"x\":0.26379655576528716,\"y\":0.7786874328736609,\"name\":\"cat8\",\"home\":\"London\"},{\"x\":4.637112398516696,\"y\":2.6885733522950144,\"name\":\"cat9\",\"home\":\"Kyoto\"}]},\"extension\":[]}\n",
439
+ " var id_name = '#vis-52ab2732-c589-49c5-b0a4-472a4a560316';\n",
440
+ " Nyaplot.core.parse(model, id_name);\n",
441
+ "\n",
442
+ " require(['downloadable'], function(downloadable){\n",
443
+ " var svg = d3.select(id_name).select(\"svg\");\n",
444
+ "\t if(!svg.empty())\n",
445
+ "\t svg.call(downloadable().filename('fig'));\n",
446
+ "\t});\n",
447
+ " };\n",
448
+ " if(window['Nyaplot']==undefined){\n",
449
+ " window.addEventListener('load_nyaplot', render, false);\n",
450
+ "\treturn;\n",
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+ " } else {\n",
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+ " render();\n",
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+ " }\n",
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+ "})();\n",
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+ "</script>\n"
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+ ],
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- "<table><tr><th>mutation</th><th>blood</th><th>set1</th><th>set2</th><th>set3</th><th>set12</th><th>set21</th><th>set31</th></tr><tr><td>G>A</td><td>0.0</td><td>0.019230769230769232</td><td>0.0</td><td>0.48214285714285715</td><td>0.0</td><td>0.0</td><td>0.4782608695652174</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42592592592592593</td><td>0.0</td><td>0.0</td><td>0.375</td><td>0.0</td><td>0.0</td></tr><tr><td>A>C</td><td>0.0</td><td>0.6153846153846154</td><td>0.0</td><td>0.0</td><td>0.5925925925925926</td><td>0.0</td><td>0.0</td></tr><tr><td>T>A</td><td>0.0</td><td>0.525</td><td>0.0</td><td>0.0</td><td>0.5277777777777778</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td><td>0.0</td><td>0.6666666666666666</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.45652173913043476</td><td>0.0</td><td>0.0</td><td>0.43478260869565216</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.09803921568627451</td><td>0.0</td><td>0.0</td><td>0.37142857142857144</td><td>0.0</td><td>0.0</td></tr><tr><td>T>A</td><td>0.0</td><td>0.5769230769230769</td><td>0.0</td><td>0.0</td><td>0.4782608695652174</td><td>0.0</td><td>0.0</td></tr><tr><td>A>G</td><td>0.0</td><td>0.43859649122807015</td><td>0.0</td><td>0.0</td><td>0.5142857142857142</td><td>0.0</td><td>0.0</td></tr><tr><td>T>C</td><td>0.0</td><td>0.5806451612903226</td><td>0.0</td><td>0.0</td><td>0.6341463414634146</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.014705882352941176</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.41935483870967744</td></tr><tr><td>G>A</td><td>0.0</td><td>0.6666666666666666</td><td>0.0</td><td>0.0</td><td>0.5</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.532258064516129</td><td>0.0</td><td>0.0</td><td>0.5227272727272727</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.5652173913043478</td><td>0.0</td><td>0.0</td><td>0.3870967741935484</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td><td>0.0</td><td>0.3333333333333333</td><td>0.0</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.4888888888888889</td><td>0.0</td><td>0.0</td><td>0.43243243243243246</td><td>0.0</td><td>0.0</td></tr><tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr><tr><td>A>T</td><td>0.0</td><td>0.4716981132075472</td><td>0.0</td><td>0.014492753623188406</td><td>0.3142857142857143</td><td>0.0</td><td>0.0</td></tr></table>"
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:set12=>0.47058823529411764, :set21=>0.0, :set31=>0.0}, {:mutation=>\"T>G\", :blood=>0.0, :set1=>0.017857142857142856, :set2=>0.024390243902439025, :set3=>0.023809523809523808, :set12=>0.0, :set21=>0.0, :set31=>0.76}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.5, :set2=>0.0, :set3=>0.0, :set12=>0.5, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.509090909090909, :set2=>0.0, :set3=>0.0, :set12=>0.5, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>G\", :blood=>0.0, :set1=>0.017857142857142856, :set2=>0.3888888888888889, :set3=>0.0, :set12=>0.0, :set21=>0.6666666666666666, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.4594594594594595, :set2=>0.0, :set3=>0.0, :set12=>0.45, :set21=>0.0, :set31=>0.03125}, {:mutation=>\"G>T\", :blood=>0.0, :set1=>0.021739130434782608, :set2=>0.0, :set3=>0.02631578947368421, :set12=>0.3103448275862069, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.047619047619047616, :set2=>0.0, :set3=>0.023809523809523808, :set12=>0.759493670886076, :set21=>0.5841584158415841, :set31=>0.47126436781609193}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.49206349206349204, :set2=>0.0, :set3=>0.0, :set12=>0.6470588235294118, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>G\", :blood=>0.0, :set1=>0.5370370370370371, :set2=>0.0, :set3=>0.0, :set12=>0.4857142857142857, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.5882352941176471, :set2=>0.0, :set3=>0.0, :set12=>0.3055555555555556, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>T\", :blood=>0.0, :set1=>0.4716981132075472, :set2=>0.0, :set3=>0.014492753623188406, :set12=>0.3142857142857143, :set21=>0.0, :set31=>0.0}]>"
491
- ]
492
- }
493
- ],
494
- "prompt_number": 12
495
- },
463
+ "output_type": "execute_result"
464
+ }
465
+ ],
466
+ "source": [
467
+ "sc.color(colors)\n",
468
+ "sc.shape_by(:home)\n",
469
+ "plot.show"
470
+ ]
471
+ },
472
+ {
473
+ "cell_type": "markdown",
474
+ "metadata": {},
475
+ "source": [
476
+ "## Case 2: Multiple panes"
477
+ ]
478
+ },
479
+ {
480
+ "cell_type": "markdown",
481
+ "metadata": {},
482
+ "source": [
483
+ "DataFrame is also useful when visualizing data in multiple panes. Let's create plot from data about mutation. \n",
484
+ "First, fetch data from csv file. (All data used in this Tutorial is included in Nyaplot's repository: /examples/notebook/data/*)"
485
+ ]
486
+ },
487
+ {
488
+ "cell_type": "code",
489
+ "execution_count": 12,
490
+ "metadata": {
491
+ "collapsed": false
492
+ },
493
+ "outputs": [
496
494
  {
497
- "cell_type": "markdown",
495
+ "data": {
496
+ "text/html": [
497
+ "<table><tr><th>mutation</th><th>blood</th><th>set1</th><th>set2</th><th>set3</th><th>set12</th><th>set21</th><th>set31</th></tr><tr><td>G>A</td><td>0.0</td><td>0.019230769230769232</td><td>0.0</td><td>0.48214285714285715</td><td>0.0</td><td>0.0</td><td>0.4782608695652174</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42592592592592593</td><td>0.0</td><td>0.0</td><td>0.375</td><td>0.0</td><td>0.0</td></tr><tr><td>C>G</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.525</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.1935483870967742</td><td>0.0</td><td>0.0</td><td>0.4666666666666667</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.08333333333333333</td><td>0.0</td><td>0.0</td><td>0.5161290322580645</td><td>0.0</td></tr><tr><td>G>T</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.4444444444444444</td><td>0.0</td><td>0.0</td></tr><tr><td>C>G</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.4</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.03333333333333333</td><td>0.0</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td></tr><tr><td>A>C</td><td>0.0</td><td>0.6153846153846154</td><td>0.0</td><td>0.0</td><td>0.5925925925925926</td><td>0.0</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.32</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.4230769230769231</td><td>0.0</td></tr><tr><td>T>A</td><td>0.0</td><td>0.525</td><td>0.0</td><td>0.0</td><td>0.5277777777777778</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td><td>0.0</td><td>0.6666666666666666</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.5</td><td>0.03225806451612903</td></tr><tr><td>T>C</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.3793103448275862</td></tr><tr><td>C>T</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.45714285714285713</td><td>0.0</td><td>0.0</td><td>0.46875</td></tr><tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr><tr><td>A>T</td><td>0.0</td><td>0.4716981132075472</td><td>0.0</td><td>0.014492753623188406</td><td>0.3142857142857143</td><td>0.0</td><td>0.0</td></tr></table>"
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+ ],
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+ "text/plain": [
500
+ "#<Nyaplot::DataFrame:0x00000001f98868 @name=\"6317d978-bb9c-48da-95af-a440c986d9d1\", @rows=[{:mutation=>\"G>A\", :blood=>0.0, :set1=>0.019230769230769232, :set2=>0.0, :set3=>0.48214285714285715, :set12=>0.0, :set21=>0.0, :set31=>0.4782608695652174}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.42592592592592593, :set2=>0.0, :set3=>0.0, :set12=>0.375, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>G\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.525, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.1935483870967742, :set3=>0.0, :set12=>0.0, :set21=>0.4666666666666667, :set31=>0.0}, {:mutation=>\"C>A\", :blood=>0.0, :set1=>0.0, :set2=>0.08333333333333333, :set3=>0.0, :set12=>0.0, :set21=>0.5161290322580645, :set31=>0.0}, {:mutation=>\"G>T\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.4444444444444444, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>G\", :blood=>0.0, :set1=>0.0, :set2=>0.0, :set3=>0.0, :set12=>0.0, :set21=>0.0, 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501
+ ]
502
+ },
503
+ "execution_count": 12,
498
504
  "metadata": {},
499
- "source": [
500
- "Next prepare instance of Nyaplot::Plot as usual. Nyaplot::Plot.filter is a method for adding 'filter box' to the plot."
501
- ]
502
- },
505
+ "output_type": "execute_result"
506
+ }
507
+ ],
508
+ "source": [
509
+ "path = File.expand_path(\"../data/first.tab\", __FILE__)\n",
510
+ "df = Nyaplot::DataFrame.from_csv(path, sep=\"\\t\")"
511
+ ]
512
+ },
513
+ {
514
+ "cell_type": "markdown",
515
+ "metadata": {},
516
+ "source": [
517
+ "Now I want to plot **SET1** column, but it contains many zero cells. Then filter them out."
518
+ ]
519
+ },
520
+ {
521
+ "cell_type": "code",
522
+ "execution_count": 13,
523
+ "metadata": {
524
+ "collapsed": false
525
+ },
526
+ "outputs": [
503
527
  {
504
- "cell_type": "code",
505
- "collapsed": false,
506
- "input": [
507
- "plot4=Nyaplot::Plot.new\n",
508
- "plot4.add_with_df(df, :histogram, :set1)\n",
509
- "plot4.configure do\n",
510
- " height(400)\n",
511
- " x_label('PNR')\n",
512
- " y_label('Frequency')\n",
513
- " filter({target:'x'})\n",
514
- " yrange([0,130])\n",
515
- "end\n",
516
- "\n",
517
- "plot5=Nyaplot::Plot.new\n",
518
- "plot5.add_with_df(df, :bar, :mutation)\n",
519
- "plot5.configure do\n",
520
- " height(400)\n",
521
- " x_label('Mutation types')\n",
522
- " y_label('Frequency')\n",
523
- " yrange([0,100])\n",
524
- "end"
525
- ],
526
- "language": "python",
528
+ "data": {
529
+ "text/html": [
530
+ "<table><tr><th>mutation</th><th>blood</th><th>set1</th><th>set2</th><th>set3</th><th>set12</th><th>set21</th><th>set31</th></tr><tr><td>G>A</td><td>0.0</td><td>0.019230769230769232</td><td>0.0</td><td>0.48214285714285715</td><td>0.0</td><td>0.0</td><td>0.4782608695652174</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42592592592592593</td><td>0.0</td><td>0.0</td><td>0.375</td><td>0.0</td><td>0.0</td></tr><tr><td>A>C</td><td>0.0</td><td>0.6153846153846154</td><td>0.0</td><td>0.0</td><td>0.5925925925925926</td><td>0.0</td><td>0.0</td></tr><tr><td>T>A</td><td>0.0</td><td>0.525</td><td>0.0</td><td>0.0</td><td>0.5277777777777778</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td><td>0.0</td><td>0.6666666666666666</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.45652173913043476</td><td>0.0</td><td>0.0</td><td>0.43478260869565216</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.09803921568627451</td><td>0.0</td><td>0.0</td><td>0.37142857142857144</td><td>0.0</td><td>0.0</td></tr><tr><td>T>A</td><td>0.0</td><td>0.5769230769230769</td><td>0.0</td><td>0.0</td><td>0.4782608695652174</td><td>0.0</td><td>0.0</td></tr><tr><td>A>G</td><td>0.0</td><td>0.43859649122807015</td><td>0.0</td><td>0.0</td><td>0.5142857142857142</td><td>0.0</td><td>0.0</td></tr><tr><td>T>C</td><td>0.0</td><td>0.5806451612903226</td><td>0.0</td><td>0.0</td><td>0.6341463414634146</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.014705882352941176</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.0</td><td>0.41935483870967744</td></tr><tr><td>G>A</td><td>0.0</td><td>0.6666666666666666</td><td>0.0</td><td>0.0</td><td>0.5</td><td>0.0</td><td>0.0</td></tr><tr><td>C>T</td><td>0.0</td><td>0.532258064516129</td><td>0.0</td><td>0.0</td><td>0.5227272727272727</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.5652173913043478</td><td>0.0</td><td>0.0</td><td>0.3870967741935484</td><td>0.0</td><td>0.0</td></tr><tr><td>G>A</td><td>0.0</td><td>0.42857142857142855</td><td>0.0</td><td>0.0</td><td>0.3333333333333333</td><td>0.0</td><td>0.0</td></tr><tr><td>C>A</td><td>0.0</td><td>0.4888888888888889</td><td>0.0</td><td>0.0</td><td>0.43243243243243246</td><td>0.0</td><td>0.0</td></tr><tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr><tr><td>A>T</td><td>0.0</td><td>0.4716981132075472</td><td>0.0</td><td>0.014492753623188406</td><td>0.3142857142857143</td><td>0.0</td><td>0.0</td></tr></table>"
531
+ ],
532
+ "text/plain": [
533
+ "#<Nyaplot::DataFrame:0x00000001f98868 @name=\"6317d978-bb9c-48da-95af-a440c986d9d1\", @rows=[{:mutation=>\"G>A\", :blood=>0.0, :set1=>0.019230769230769232, :set2=>0.0, :set3=>0.48214285714285715, :set12=>0.0, :set21=>0.0, :set31=>0.4782608695652174}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.42592592592592593, :set2=>0.0, :set3=>0.0, :set12=>0.375, :set21=>0.0, :set31=>0.0}, {:mutation=>\"A>C\", :blood=>0.0, :set1=>0.6153846153846154, :set2=>0.0, :set3=>0.0, :set12=>0.5925925925925926, :set21=>0.0, :set31=>0.0}, {:mutation=>\"T>A\", :blood=>0.0, :set1=>0.525, :set2=>0.0, :set3=>0.0, :set12=>0.5277777777777778, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.42857142857142855, :set2=>0.0, :set3=>0.0, :set12=>0.6666666666666666, :set21=>0.0, :set31=>0.0}, {:mutation=>\"G>A\", :blood=>0.0, :set1=>0.45652173913043476, :set2=>0.0, :set3=>0.0, :set12=>0.43478260869565216, :set21=>0.0, :set31=>0.0}, {:mutation=>\"C>T\", :blood=>0.0, :set1=>0.09803921568627451, 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+ ]
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+ },
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+ "execution_count": 13,
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  "metadata": {},
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- "outputs": [
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- {
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- "html": [
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536
- " Nyaplot.core.parse(model, '#vis-58e5f01f-91cb-4d47-854d-0b171ed563c0');\n",
537
- " };\n",
538
- " if(window['Nyaplot']==undefined){\n",
539
- " window.addEventListener('load_nyaplot', render, false);\n",
540
- "\treturn;\n",
541
- " } else {\n",
542
- " render();\n",
543
- " }\n",
544
- "})();\n",
545
- "</script>\n"
546
- ],
547
- "metadata": {},
548
- "output_type": "pyout",
549
- "prompt_number": 13,
550
- "text": [
551
- "#<Nyaplot::Plot:0xb9a53ee4 @properties={:diagrams=>[#<Nyaplot::Diagram:0xb9a53dcc @properties={:type=>:bar, :options=>{:value=>:mutation}, :data=>\"1c1e8c6a-1256-416b-a45e-961a0eb39bd5\"}, @xrange=[\"G>A\", \"C>T\", \"A>C\", \"T>A\", \"A>G\", \"T>C\", \"C>A\", \"A>T\", \"T>G\", \"G>T\", \"G>C\", \"C>G\"], @yrange=[0, 452]>], :options=>{:height=>400, :x_label=>\"Mutation types\", :y_label=>\"Frequency\", :yrange=>[0, 100], :width=>700, :xrange=>[\"G>A\", \"C>T\", \"A>C\", \"T>A\", \"A>G\", \"T>C\", \"C>A\", \"A>T\", \"T>G\", \"G>T\", \"G>C\", \"C>G\"]}}>"
552
- ]
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- }
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- ],
555
- "prompt_number": 13
556
- },
538
+ "output_type": "execute_result"
539
+ }
540
+ ],
541
+ "source": [
542
+ "df.filter! {|row| row[:set1] != 0.0}\n",
543
+ "df"
544
+ ]
545
+ },
546
+ {
547
+ "cell_type": "markdown",
548
+ "metadata": {},
549
+ "source": [
550
+ "Next prepare instance of Nyaplot::Plot as usual. Nyaplot::Plot.filter is a method for adding 'filter box' to the plot."
551
+ ]
552
+ },
553
+ {
554
+ "cell_type": "code",
555
+ "execution_count": 14,
556
+ "metadata": {
557
+ "collapsed": false
558
+ },
559
+ "outputs": [
557
560
  {
558
- "cell_type": "markdown",
561
+ "data": {
562
+ "text/html": [
563
+ "<div id='vis-c8a30e1d-0d84-4f75-9667-c152adcaa13e'></div>\n",
564
+ "<script>\n",
565
+ "(function(){\n",
566
+ " var render = function(){\n",
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568
+ " var id_name = '#vis-c8a30e1d-0d84-4f75-9667-c152adcaa13e';\n",
569
+ " Nyaplot.core.parse(model, id_name);\n",
570
+ "\n",
571
+ " require(['downloadable'], function(downloadable){\n",
572
+ " var svg = d3.select(id_name).select(\"svg\");\n",
573
+ "\t if(!svg.empty())\n",
574
+ "\t svg.call(downloadable().filename('fig'));\n",
575
+ "\t});\n",
576
+ " };\n",
577
+ " if(window['Nyaplot']==undefined){\n",
578
+ " window.addEventListener('load_nyaplot', render, false);\n",
579
+ "\treturn;\n",
580
+ " } else {\n",
581
+ " render();\n",
582
+ " }\n",
583
+ "})();\n",
584
+ "</script>\n"
585
+ ],
586
+ "text/plain": [
587
+ "#<Nyaplot::Plot:0x00000001eff668 @properties={:diagrams=>[#<Nyaplot::Diagram:0x00000001eff4b0 @properties={:type=>:bar, :options=>{:value=>:mutation}, :data=>\"6317d978-bb9c-48da-95af-a440c986d9d1\"}, @xrange=[\"G>A\", \"C>T\", \"A>C\", \"T>A\", \"A>G\", \"T>C\", \"C>A\", \"A>T\", \"T>G\", \"G>T\", \"G>C\", \"C>G\"], @yrange=[0, 452]>], :options=>{:height=>400, :x_label=>\"Mutation types\", :y_label=>\"Frequency\", :yrange=>[0, 100], :width=>700, :xrange=>[\"G>A\", \"C>T\", \"A>C\", \"T>A\", \"A>G\", \"T>C\", \"C>A\", \"A>T\", \"T>G\", \"G>T\", \"G>C\", \"C>G\"]}}>"
588
+ ]
589
+ },
590
+ "execution_count": 14,
559
591
  "metadata": {},
560
- "source": [
561
- "Then create an instance of Nyaplot::Frame. It can hold multiple plots in it, and it helps them to interact with each other."
562
- ]
563
- },
592
+ "output_type": "execute_result"
593
+ }
594
+ ],
595
+ "source": [
596
+ "plot4=Nyaplot::Plot.new\n",
597
+ "plot4.add_with_df(df, :histogram, :set1)\n",
598
+ "plot4.configure do\n",
599
+ " height(400)\n",
600
+ " x_label('PNR')\n",
601
+ " y_label('Frequency')\n",
602
+ " filter({target:'x'})\n",
603
+ " yrange([0,130])\n",
604
+ "end\n",
605
+ "\n",
606
+ "plot5=Nyaplot::Plot.new\n",
607
+ "plot5.add_with_df(df, :bar, :mutation)\n",
608
+ "plot5.configure do\n",
609
+ " height(400)\n",
610
+ " x_label('Mutation types')\n",
611
+ " y_label('Frequency')\n",
612
+ " yrange([0,100])\n",
613
+ "end"
614
+ ]
615
+ },
616
+ {
617
+ "cell_type": "markdown",
618
+ "metadata": {},
619
+ "source": [
620
+ "Then create an instance of Nyaplot::Frame. It can hold multiple plots in it, and it helps them to interact with each other."
621
+ ]
622
+ },
623
+ {
624
+ "cell_type": "code",
625
+ "execution_count": 15,
626
+ "metadata": {
627
+ "collapsed": false
628
+ },
629
+ "outputs": [
564
630
  {
565
- "cell_type": "code",
566
- "collapsed": false,
567
- "input": [
568
- "frame = Nyaplot::Frame.new\n",
569
- "frame.add(plot4)\n",
570
- "frame.add(plot5)\n",
571
- "frame.show"
572
- ],
573
- "language": "python",
631
+ "data": {
632
+ "text/html": [
633
+ "<div id='vis-a3dd5bf4-6432-4533-98b3-afe1f672c36c'></div>\n",
634
+ "<script>\n",
635
+ "(function(){\n",
636
+ " var render = function(){\n",
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638
+ " var id_name = '#vis-a3dd5bf4-6432-4533-98b3-afe1f672c36c';\n",
639
+ " Nyaplot.core.parse(model, id_name);\n",
640
+ "\n",
641
+ " require(['downloadable'], function(downloadable){\n",
642
+ " var svg = d3.select(id_name).select(\"svg\");\n",
643
+ "\t if(!svg.empty())\n",
644
+ "\t svg.call(downloadable().filename('fig'));\n",
645
+ "\t});\n",
646
+ " };\n",
647
+ " if(window['Nyaplot']==undefined){\n",
648
+ " window.addEventListener('load_nyaplot', render, false);\n",
649
+ "\treturn;\n",
650
+ " } else {\n",
651
+ " render();\n",
652
+ " }\n",
653
+ "})();\n",
654
+ "</script>\n"
655
+ ],
656
+ "text/plain": [
657
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+ "execution_count": 15,
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  "metadata": {},
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- "outputs": [
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- ]
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- }
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- ],
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- "prompt_number": 14
662
+ "output_type": "execute_result"
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663
  }
604
664
  ],
605
- "metadata": {}
665
+ "source": [
666
+ "frame = Nyaplot::Frame.new\n",
667
+ "frame.add(plot4)\n",
668
+ "frame.add(plot5)\n",
669
+ "frame.show"
670
+ ]
606
671
  }
607
- ]
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- }
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+ ],
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+ "metadata": {
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+ "kernelspec": {
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+ "display_name": "Ruby",
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+ "language": "ruby",
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+ "name": "ruby"
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+ },
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+ "language_info": {
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+ "name": "ruby",
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+ "version": "2.1.2"
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+ }
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+ "nbformat": 4,
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+ "nbformat_minor": 0
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+ }