nugen_barcode_splitter 0.0.5 → 0.0.6
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data/bin/nugen_barcode_splitter
CHANGED
@@ -5,7 +5,7 @@ require "nugen_barcode_splitter"
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5
5
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require "fileutils"
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6
6
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7
7
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usage =<<EOF
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8
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-
V E R S I O N - 0 . 0 .
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8
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+
V E R S I O N - 0 . 0 . 6
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9
9
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#{$0} [options] -p project_dir -o out_dir -c sample_sheet_nugen
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10
10
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_____________________________________________________________________________
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11
11
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@@ -4,13 +4,6 @@ class NugenTemplate
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4
4
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5
5
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def initialize(fastq_multx, options)
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6
6
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@template =<<EOF
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7
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-
#!/bin/bash
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8
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-
#\$ -pe DJ 4
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9
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-
#\$ -l h_vmem=6G
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10
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-
#\$ -j y
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11
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-
#\$ -N fq.Lane<%= @lane %>.<%= @number %>
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12
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-
#\$ -o <%= @lane_dir %>/nugen_demultiplexing.log
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13
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-
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14
7
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#{fastq_multx} #{options} -B <%= @barcodes %> \\
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15
8
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<(gunzip -c <%= @fwd %>) \\
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16
9
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<(gunzip -c <%= @rev %>) \\
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