nugen_barcode_splitter 0.0.3 → 0.0.4
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data/bin/nugen_barcode_splitter
CHANGED
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@@ -5,7 +5,7 @@ require "nugen_barcode_splitter"
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require "fileutils"
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usage =<<EOF
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8
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-
V E R S I O N - 0 . 0 .
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8
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+
V E R S I O N - 0 . 0 . 4
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#{$0} [options] -p project_dir -o out_dir -c sample_sheet_nugen
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_____________________________________________________________________________
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@@ -12,7 +12,8 @@ class NugenTemplate
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#\$ -o <%= @lane_dir %>/nugen_demultiplexing.log
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#{fastq_multx} #{options} -B <%= @barcodes %> \\
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-
<(gunzip -c <%= @fwd %>)
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+
<(gunzip -c <%= @fwd %>) \\
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<(gunzip -c <%= @rev %>) \\
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-o <%= @lane_dir %>/<%= @r1 %>.%.fq <%= @lane_dir %>/<%= @r2 %>.%.fq \\
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>> <%= @lane_dir %>/nugen_demultiplexing.log
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EOF
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