nmatrix 0.1.0.rc4 → 0.1.0.rc5
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- checksums.yaml +4 -4
- data/Gemfile +0 -5
- data/History.txt +29 -1
- data/Manifest.txt +1 -0
- data/README.rdoc +1 -1
- data/Rakefile +7 -9
- data/ext/nmatrix/data/data.cpp +2 -2
- data/ext/nmatrix/extconf.rb +1 -1
- data/ext/nmatrix/math.cpp +4 -4
- data/ext/nmatrix/nmatrix.h +17 -14
- data/ext/nmatrix/ruby_nmatrix.c +158 -157
- data/ext/nmatrix/storage/dense/dense.cpp +28 -28
- data/ext/nmatrix/storage/list/list.cpp +63 -63
- data/ext/nmatrix/storage/yale/class.h +15 -15
- data/ext/nmatrix/storage/yale/yale.cpp +84 -84
- data/lib/nmatrix/homogeneous.rb +143 -0
- data/lib/nmatrix/nmatrix.rb +12 -0
- data/lib/nmatrix/version.rb +1 -1
- data/nmatrix.gemspec +7 -7
- data/spec/00_nmatrix_spec.rb +16 -0
- data/spec/homogeneous_spec.rb +91 -0
- data/spec/rspec_spec.rb +2 -2
- metadata +43 -34
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 101aa626bcac374a9e9d435b01f81ce119df0589
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4
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+
data.tar.gz: 003a943f6e7a84371460c36cf7eec4b6e5edc732
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 8caa3986e557c54d6040e86201537dce92c3db161a27d545059244a4e32b7dab2dd396962d1ac77724dffb499d9076aa6c9637dee688149fae7a072e2a03890e
|
7
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+
data.tar.gz: 20fb3e32a7f7d59a02e20435ea80430ddddd20f6d479862ebc52e2dbc180ed17e0c1d35a3d9e7a7d65675ac0d382bed83b43a5cc3a1e9ea1478fbf66ba60dc52
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data/Gemfile
CHANGED
data/History.txt
CHANGED
@@ -603,7 +603,7 @@
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603
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* No major enhancements.
|
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|
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-
* 1 minor
|
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+
* 1 minor enhancement:
|
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608
608
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* NMatrix#floor and #ceil implemented (by @v0dro)
|
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@@ -612,3 +612,31 @@
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612
612
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* Disallowed out-of-bounds rank calls (by @andrewcsmith)
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* Fixed rspec 3.0 conflict with rspec-longrun 1.0.1
|
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+
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+
=== 0.1.0.rc5 / 2014-08-01
|
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|
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+
* No major enhancements.
|
619
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+
|
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+
* 1 minor enhancements:
|
621
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+
|
622
|
+
* Added optional extension for generating homogeneous
|
623
|
+
transformation matrices for rotations and translations in three
|
624
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+
dimensions
|
625
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+
|
626
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+
* 3 bug fixes:
|
627
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+
|
628
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+
* Fixed rake install (by @duggiefresh)
|
629
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+
|
630
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+
* Fixed API problems which prevented NMatrix from working with
|
631
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+
the SciRuby rb-gsl fork
|
632
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+
|
633
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+
* Fixed Yale #inject behavior (by @yoongkang)
|
634
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+
|
635
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+
=== 0.1.0.rc6 / 2014-08-??
|
636
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+
|
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+
* No major enhancements.
|
638
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+
|
639
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+
* No minor enhancements.
|
640
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+
|
641
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+
* No bug fixes.
|
642
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+
|
data/Manifest.txt
CHANGED
data/README.rdoc
CHANGED
@@ -41,7 +41,7 @@ If you want to obtain the latest (development) code, you should generally do:
|
|
41
41
|
bundle install
|
42
42
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bundle exec rake compile
|
43
43
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bundle exec rake repackage
|
44
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-
gem install pkg/nmatrix-0.1.0.
|
44
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+
gem install pkg/nmatrix-0.1.0.rc5.gem
|
45
45
|
|
46
46
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Detailed instructions are available for {Mac}[https://github.com/SciRuby/nmatrix/wiki/Installation#mac-os-x] and {Linux}[https://github.com/SciRuby/nmatrix/wiki/Installation#linux].
|
47
47
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We are currently working on Mavericks (Mac OS X) installation instructions, but in general, you'll need Homebrew and should
|
data/Rakefile
CHANGED
@@ -3,6 +3,9 @@
|
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3
3
|
require 'rubygems'
|
4
4
|
require 'rubygems/package_task'
|
5
5
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require 'bundler'
|
6
|
+
|
7
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+
Bundler::GemHelper.install_tasks
|
8
|
+
|
6
9
|
begin
|
7
10
|
Bundler.setup(:default, :development)
|
8
11
|
rescue Bundler::BundlerError => e
|
@@ -14,21 +17,16 @@ end
|
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14
17
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require 'rake'
|
15
18
|
require "rake/extensiontask"
|
16
19
|
Rake::ExtensionTask.new do |ext|
|
17
|
-
ext.name = 'nmatrix'
|
18
|
-
ext.ext_dir = 'ext/nmatrix'
|
19
|
-
ext.lib_dir = 'lib/'
|
20
|
-
ext.source_pattern = "**/*.{c,cpp, h}"
|
20
|
+
ext.name = 'nmatrix'
|
21
|
+
ext.ext_dir = 'ext/nmatrix'
|
22
|
+
ext.lib_dir = 'lib/'
|
23
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+
ext.source_pattern = "**/*.{c,cpp, h}"
|
21
24
|
end
|
22
25
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|
23
26
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gemspec = eval(IO.read("nmatrix.gemspec"))
|
24
27
|
|
25
28
|
Gem::PackageTask.new(gemspec).define
|
26
29
|
|
27
|
-
desc "install the gem locally"
|
28
|
-
task :install => [:package] do
|
29
|
-
sh %{gem install pkg/nmatrix-#{NMatrix::VERSION}.gem}
|
30
|
-
end
|
31
|
-
|
32
30
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require 'rspec/core/rake_task'
|
33
31
|
require 'rspec/core'
|
34
32
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require 'rspec/core/rake_task'
|
data/ext/nmatrix/data/data.cpp
CHANGED
@@ -283,11 +283,11 @@ nm::RubyObject rubyobj_from_cval(void* val, nm::dtype_t dtype) {
|
|
283
283
|
*/
|
284
284
|
void* rubyobj_to_cval(VALUE val, nm::dtype_t dtype) {
|
285
285
|
size_t size = DTYPE_SIZES[dtype];
|
286
|
-
NM_CONSERVATIVE(nm_register_value(val));
|
286
|
+
NM_CONSERVATIVE(nm_register_value(&val));
|
287
287
|
void* ret_val = NM_ALLOC_N(char, size);
|
288
288
|
|
289
289
|
rubyval_to_cval(val, dtype, ret_val);
|
290
|
-
NM_CONSERVATIVE(nm_unregister_value(val));
|
290
|
+
NM_CONSERVATIVE(nm_unregister_value(&val));
|
291
291
|
return ret_val;
|
292
292
|
}
|
293
293
|
|
data/ext/nmatrix/extconf.rb
CHANGED
@@ -86,7 +86,7 @@ end
|
|
86
86
|
if RUBY_VERSION < '1.9'
|
87
87
|
raise(NotImplementedError, "Sorry, you need at least Ruby 1.9!")
|
88
88
|
else
|
89
|
-
$INSTALLFILES = [['nmatrix.h', '$(archdir)'], ['nmatrix.hpp', '$(archdir)'], ['nmatrix_config.h', '$(archdir)']]
|
89
|
+
$INSTALLFILES = [['nmatrix.h', '$(archdir)'], ['nmatrix.hpp', '$(archdir)'], ['nmatrix_config.h', '$(archdir)'], ['nm_memory.h', '$(archdir)']]
|
90
90
|
if /cygwin|mingw/ =~ RUBY_PLATFORM
|
91
91
|
$INSTALLFILES << ['libnmatrix.a', '$(archdir)']
|
92
92
|
end
|
data/ext/nmatrix/math.cpp
CHANGED
@@ -586,8 +586,8 @@ static VALUE nm_cblas_rotg(VALUE self, VALUE ab) {
|
|
586
586
|
return Qnil;
|
587
587
|
|
588
588
|
} else {
|
589
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
590
|
-
NM_CONSERVATIVE(nm_register_value(ab));
|
589
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
590
|
+
NM_CONSERVATIVE(nm_register_value(&ab));
|
591
591
|
void *pC = NM_ALLOCA_N(char, DTYPE_SIZES[dtype]),
|
592
592
|
*pS = NM_ALLOCA_N(char, DTYPE_SIZES[dtype]);
|
593
593
|
|
@@ -607,8 +607,8 @@ static VALUE nm_cblas_rotg(VALUE self, VALUE ab) {
|
|
607
607
|
rb_ary_store(result, 0, rubyobj_from_cval(pC, dtype).rval);
|
608
608
|
rb_ary_store(result, 1, rubyobj_from_cval(pS, dtype).rval);
|
609
609
|
}
|
610
|
-
NM_CONSERVATIVE(nm_unregister_value(ab));
|
611
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
610
|
+
NM_CONSERVATIVE(nm_unregister_value(&ab));
|
611
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
612
612
|
return result;
|
613
613
|
}
|
614
614
|
}
|
data/ext/nmatrix/nmatrix.h
CHANGED
@@ -53,7 +53,9 @@
|
|
53
53
|
#endif
|
54
54
|
#endif
|
55
55
|
|
56
|
-
#
|
56
|
+
#ifdef __cplusplus
|
57
|
+
#include "nm_memory.h"
|
58
|
+
#endif
|
57
59
|
|
58
60
|
/*
|
59
61
|
* Macros
|
@@ -288,15 +290,15 @@ NM_DEF_STRUCT_POST(NMATRIX); // };
|
|
288
290
|
|
289
291
|
/* Structs for dealing with VALUEs in use so that they don't get GC'd */
|
290
292
|
|
291
|
-
|
292
|
-
VALUE* val;
|
293
|
-
size_t n;
|
294
|
-
|
295
|
-
}
|
293
|
+
NM_DEF_STRUCT_PRE(NM_GC_LL_NODE); // struct NM_GC_LL_NODE {
|
294
|
+
VALUE* val; // VALUE* val;
|
295
|
+
size_t n; // size_t n;
|
296
|
+
NM_DECL_STRUCT(NM_GC_LL_NODE*, next); // NM_GC_LL_NODE* next;
|
297
|
+
NM_DEF_STRUCT_POST(NM_GC_LL_NODE); // };
|
296
298
|
|
297
|
-
|
298
|
-
|
299
|
-
}
|
299
|
+
NM_DEF_STRUCT_PRE(NM_GC_HOLDER); // struct NM_GC_HOLDER {
|
300
|
+
NM_DECL_STRUCT(NM_GC_LL_NODE*, start); // NM_GC_LL_NODE* start;
|
301
|
+
NM_DEF_STRUCT_POST(NM_GC_HOLDER); // };
|
300
302
|
|
301
303
|
#define NM_MAX_RANK 15
|
302
304
|
|
@@ -382,16 +384,17 @@ extern "C" {
|
|
382
384
|
void nm_delete(NMATRIX* mat);
|
383
385
|
void nm_delete_ref(NMATRIX* mat);
|
384
386
|
void nm_register_values(VALUE* vals, size_t n);
|
387
|
+
void nm_register_value(VALUE* val);
|
388
|
+
void nm_unregister_value(VALUE* val);
|
385
389
|
void nm_unregister_values(VALUE* vals, size_t n);
|
386
|
-
void
|
387
|
-
void
|
388
|
-
void nm_register_storage(nm::stype_t stype, const STORAGE* storage);
|
389
|
-
void nm_unregister_storage(nm::stype_t stype, const STORAGE* storage);
|
390
|
+
void nm_register_storage(NM_DECL_ENUM(stype_t, stype), const STORAGE* storage);
|
391
|
+
void nm_unregister_storage(NM_DECL_ENUM(stype_t, stype), const STORAGE* storage);
|
390
392
|
void nm_register_nmatrix(NMATRIX* nmatrix);
|
391
393
|
void nm_unregister_nmatrix(NMATRIX* nmatrix);
|
392
|
-
void nm_completely_unregister_value(VALUE
|
394
|
+
void nm_completely_unregister_value(VALUE* val);
|
393
395
|
#ifdef __cplusplus
|
394
396
|
}
|
397
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+
|
395
398
|
#endif
|
396
399
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|
397
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|
#endif // NMATRIX_H
|
data/ext/nmatrix/ruby_nmatrix.c
CHANGED
@@ -428,7 +428,7 @@ static VALUE nm_alloc(VALUE klass) {
|
|
428
428
|
* just return the original matrix's capacity.
|
429
429
|
*/
|
430
430
|
static VALUE nm_capacity(VALUE self) {
|
431
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
431
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
432
432
|
VALUE cap;
|
433
433
|
|
434
434
|
switch(NM_STYPE(self)) {
|
@@ -497,15 +497,15 @@ void nm_delete_ref(NMATRIX* mat) {
|
|
497
497
|
* use by nmatrix so that they can be marked when GC runs.
|
498
498
|
*/
|
499
499
|
static VALUE* gc_value_holder = NULL;
|
500
|
-
static
|
501
|
-
static
|
500
|
+
static NM_GC_HOLDER* gc_value_holder_struct = NULL;
|
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|
+
static NM_GC_HOLDER* allocated_pool = NULL; // an object pool for linked list nodes; using pooling is in some cases a substantial performance improvement
|
502
502
|
|
503
503
|
/**
|
504
504
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* GC Marking function for the values that have been registered.
|
505
505
|
*/
|
506
|
-
static void __nm_mark_value_container(
|
506
|
+
static void __nm_mark_value_container(NM_GC_HOLDER* gc_value_holder_struct) {
|
507
507
|
if (gc_value_holder_struct && gc_value_holder_struct->start) {
|
508
|
-
|
508
|
+
NM_GC_LL_NODE* curr = gc_value_holder_struct->start;
|
509
509
|
while (curr) {
|
510
510
|
rb_gc_mark_locations(curr->val, curr->val + curr->n);
|
511
511
|
curr = curr->next;
|
@@ -519,8 +519,8 @@ static void __nm_mark_value_container(nm_gc_holder* gc_value_holder_struct) {
|
|
519
519
|
*/
|
520
520
|
static void __nm_initialize_value_container() {
|
521
521
|
if (gc_value_holder == NULL) {
|
522
|
-
gc_value_holder_struct = NM_ALLOC_NONRUBY(
|
523
|
-
allocated_pool = NM_ALLOC_NONRUBY(
|
522
|
+
gc_value_holder_struct = NM_ALLOC_NONRUBY(NM_GC_HOLDER);
|
523
|
+
allocated_pool = NM_ALLOC_NONRUBY(NM_GC_HOLDER);
|
524
524
|
gc_value_holder = NM_ALLOC_NONRUBY(VALUE);
|
525
525
|
gc_value_holder_struct->start = NULL;
|
526
526
|
allocated_pool->start = NULL;
|
@@ -537,12 +537,12 @@ void nm_register_values(VALUE* values, size_t n) {
|
|
537
537
|
if (!gc_value_holder_struct)
|
538
538
|
__nm_initialize_value_container();
|
539
539
|
if (values) {
|
540
|
-
|
540
|
+
NM_GC_LL_NODE* to_insert = NULL;
|
541
541
|
if (allocated_pool->start) {
|
542
542
|
to_insert = allocated_pool->start;
|
543
543
|
allocated_pool->start = to_insert->next;
|
544
544
|
} else {
|
545
|
-
to_insert = NM_ALLOC_NONRUBY(
|
545
|
+
to_insert = NM_ALLOC_NONRUBY(NM_GC_LL_NODE);
|
546
546
|
}
|
547
547
|
to_insert->val = values;
|
548
548
|
to_insert->n = n;
|
@@ -558,8 +558,8 @@ void nm_register_values(VALUE* values, size_t n) {
|
|
558
558
|
void nm_unregister_values(VALUE* values, size_t n) {
|
559
559
|
if (values) {
|
560
560
|
if (gc_value_holder_struct) {
|
561
|
-
|
562
|
-
|
561
|
+
NM_GC_LL_NODE* curr = gc_value_holder_struct->start;
|
562
|
+
NM_GC_LL_NODE* last = NULL;
|
563
563
|
while (curr) {
|
564
564
|
if (curr->val == values) {
|
565
565
|
if (last) {
|
@@ -580,18 +580,19 @@ void nm_unregister_values(VALUE* values, size_t n) {
|
|
580
580
|
}
|
581
581
|
}
|
582
582
|
|
583
|
+
|
583
584
|
/**
|
584
585
|
* Register a single VALUE as in use to avoid garbage collection.
|
585
586
|
*/
|
586
|
-
void nm_register_value(VALUE
|
587
|
-
nm_register_values(
|
587
|
+
void nm_register_value(VALUE* val) {
|
588
|
+
nm_register_values(val, 1);
|
588
589
|
}
|
589
590
|
|
590
591
|
/**
|
591
592
|
* Unregister a single VALUE to allow normal garbage collection.
|
592
593
|
*/
|
593
|
-
void nm_unregister_value(VALUE
|
594
|
-
nm_unregister_values(
|
594
|
+
void nm_unregister_value(VALUE* val) {
|
595
|
+
nm_unregister_values(val, 1);
|
595
596
|
}
|
596
597
|
|
597
598
|
/**
|
@@ -600,26 +601,26 @@ void nm_unregister_value(VALUE& val) {
|
|
600
601
|
* freed and replaced so that and residual registrations won't access after
|
601
602
|
* free.
|
602
603
|
**/
|
603
|
-
void nm_completely_unregister_value(VALUE
|
604
|
+
void nm_completely_unregister_value(VALUE* val) {
|
604
605
|
if (gc_value_holder_struct) {
|
605
|
-
|
606
|
-
|
606
|
+
NM_GC_LL_NODE* curr = gc_value_holder_struct->start;
|
607
|
+
NM_GC_LL_NODE* last = NULL;
|
607
608
|
while (curr) {
|
608
|
-
if (curr->val ==
|
609
|
-
|
610
|
-
|
611
|
-
|
612
|
-
|
613
|
-
|
614
|
-
|
615
|
-
|
616
|
-
|
617
|
-
|
618
|
-
|
619
|
-
|
609
|
+
if (curr->val == val) {
|
610
|
+
if (last) {
|
611
|
+
last->next = curr->next;
|
612
|
+
} else {
|
613
|
+
gc_value_holder_struct->start = curr->next;
|
614
|
+
}
|
615
|
+
NM_GC_LL_NODE* temp_next = curr->next;
|
616
|
+
curr->next = allocated_pool->start;
|
617
|
+
curr->val = NULL;
|
618
|
+
curr->n = 0;
|
619
|
+
allocated_pool->start = curr;
|
620
|
+
curr = temp_next;
|
620
621
|
} else {
|
621
|
-
|
622
|
-
|
622
|
+
last = curr;
|
623
|
+
curr = curr->next;
|
623
624
|
}
|
624
625
|
}
|
625
626
|
}
|
@@ -725,7 +726,7 @@ static VALUE nm_default_value(VALUE self) {
|
|
725
726
|
* Iterate over all entries of any matrix in standard storage order (as with #each), and include the indices.
|
726
727
|
*/
|
727
728
|
static VALUE nm_each_with_indices(VALUE nmatrix) {
|
728
|
-
NM_CONSERVATIVE(nm_register_value(nmatrix));
|
729
|
+
NM_CONSERVATIVE(nm_register_value(&nmatrix));
|
729
730
|
VALUE to_return = Qnil;
|
730
731
|
|
731
732
|
switch(NM_STYPE(nmatrix)) {
|
@@ -756,7 +757,7 @@ static VALUE nm_each_with_indices(VALUE nmatrix) {
|
|
756
757
|
* i, j, ..., and the entry itself.
|
757
758
|
*/
|
758
759
|
static VALUE nm_each_stored_with_indices(VALUE nmatrix) {
|
759
|
-
NM_CONSERVATIVE(nm_register_value(nmatrix));
|
760
|
+
NM_CONSERVATIVE(nm_register_value(&nmatrix));
|
760
761
|
VALUE to_return = Qnil;
|
761
762
|
|
762
763
|
switch(NM_STYPE(nmatrix)) {
|
@@ -788,7 +789,7 @@ static VALUE nm_each_stored_with_indices(VALUE nmatrix) {
|
|
788
789
|
* i, j, ..., and the entry itself.
|
789
790
|
*/
|
790
791
|
static VALUE nm_map_stored(VALUE nmatrix) {
|
791
|
-
NM_CONSERVATIVE(nm_register_value(nmatrix));
|
792
|
+
NM_CONSERVATIVE(nm_register_value(&nmatrix));
|
792
793
|
VALUE to_return = Qnil;
|
793
794
|
|
794
795
|
switch(NM_STYPE(nmatrix)) {
|
@@ -818,7 +819,7 @@ static VALUE nm_map_stored(VALUE nmatrix) {
|
|
818
819
|
* than storage ordering, which only matters if your matrix is Yale.
|
819
820
|
*/
|
820
821
|
static VALUE nm_each_ordered_stored_with_indices(VALUE nmatrix) {
|
821
|
-
NM_CONSERVATIVE(nm_register_value(nmatrix));
|
822
|
+
NM_CONSERVATIVE(nm_register_value(&nmatrix));
|
822
823
|
VALUE to_return = Qnil;
|
823
824
|
|
824
825
|
switch(NM_STYPE(nmatrix)) {
|
@@ -852,8 +853,8 @@ static VALUE nm_each_ordered_stored_with_indices(VALUE nmatrix) {
|
|
852
853
|
* When stypes differ, this function calls a protected Ruby method.
|
853
854
|
*/
|
854
855
|
static VALUE nm_eqeq(VALUE left, VALUE right) {
|
855
|
-
NM_CONSERVATIVE(nm_register_value(left));
|
856
|
-
NM_CONSERVATIVE(nm_register_value(right));
|
856
|
+
NM_CONSERVATIVE(nm_register_value(&left));
|
857
|
+
NM_CONSERVATIVE(nm_register_value(&right));
|
857
858
|
|
858
859
|
NMATRIX *l, *r;
|
859
860
|
|
@@ -889,8 +890,8 @@ static VALUE nm_eqeq(VALUE left, VALUE right) {
|
|
889
890
|
}
|
890
891
|
}
|
891
892
|
|
892
|
-
NM_CONSERVATIVE(nm_unregister_value(left));
|
893
|
-
NM_CONSERVATIVE(nm_unregister_value(right));
|
893
|
+
NM_CONSERVATIVE(nm_unregister_value(&left));
|
894
|
+
NM_CONSERVATIVE(nm_unregister_value(&right));
|
894
895
|
|
895
896
|
return result ? Qtrue : Qfalse;
|
896
897
|
}
|
@@ -1104,7 +1105,7 @@ NMATRIX* nm_create(nm::stype_t stype, STORAGE* storage) {
|
|
1104
1105
|
*/
|
1105
1106
|
static VALUE nm_init_new_version(int argc, VALUE* argv, VALUE self) {
|
1106
1107
|
NM_CONSERVATIVE(nm_register_values(argv, argc));
|
1107
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
1108
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
1108
1109
|
VALUE shape_ary, initial_ary, hash;
|
1109
1110
|
//VALUE shape_ary, default_val, capacity, initial_ary, dtype_sym, stype_sym;
|
1110
1111
|
// Mandatory args: shape, dtype, stype
|
@@ -1126,9 +1127,9 @@ static VALUE nm_init_new_version(int argc, VALUE* argv, VALUE self) {
|
|
1126
1127
|
}
|
1127
1128
|
}
|
1128
1129
|
#endif
|
1129
|
-
NM_CONSERVATIVE(nm_register_value(shape_ary));
|
1130
|
-
NM_CONSERVATIVE(nm_register_value(initial_ary));
|
1131
|
-
NM_CONSERVATIVE(nm_register_value(hash));
|
1130
|
+
NM_CONSERVATIVE(nm_register_value(&shape_ary));
|
1131
|
+
NM_CONSERVATIVE(nm_register_value(&initial_ary));
|
1132
|
+
NM_CONSERVATIVE(nm_register_value(&hash));
|
1132
1133
|
// Get the shape.
|
1133
1134
|
size_t dim;
|
1134
1135
|
size_t* shape = interpret_shape(shape_ary, &dim);
|
@@ -1144,9 +1145,9 @@ static VALUE nm_init_new_version(int argc, VALUE* argv, VALUE self) {
|
|
1144
1145
|
dtype_sym = rb_hash_aref(hash, ID2SYM(nm_rb_dtype));
|
1145
1146
|
stype_sym = rb_hash_aref(hash, ID2SYM(nm_rb_stype));
|
1146
1147
|
capacity_num = rb_hash_aref(hash, ID2SYM(nm_rb_capacity));
|
1147
|
-
NM_CONSERVATIVE(nm_register_value(capacity_num));
|
1148
|
+
NM_CONSERVATIVE(nm_register_value(&capacity_num));
|
1148
1149
|
default_val_num = rb_hash_aref(hash, ID2SYM(nm_rb_default));
|
1149
|
-
NM_CONSERVATIVE(nm_register_value(default_val_num));
|
1150
|
+
NM_CONSERVATIVE(nm_register_value(&default_val_num));
|
1150
1151
|
}
|
1151
1152
|
|
1152
1153
|
// stype ||= :dense
|
@@ -1250,7 +1251,7 @@ static VALUE nm_init_new_version(int argc, VALUE* argv, VALUE self) {
|
|
1250
1251
|
nm_register_nmatrix(tmp);
|
1251
1252
|
VALUE rb_tmp = Data_Wrap_Struct(CLASS_OF(self), nm_mark, nm_delete, tmp);
|
1252
1253
|
nm_unregister_nmatrix(tmp);
|
1253
|
-
nm_register_value(rb_tmp);
|
1254
|
+
nm_register_value(&rb_tmp);
|
1254
1255
|
if (stype == nm::YALE_STORE) nm_yale_storage_set(self, slice, rb_tmp);
|
1255
1256
|
else nm_list_storage_set(self, slice, rb_tmp);
|
1256
1257
|
|
@@ -1262,7 +1263,7 @@ static VALUE nm_init_new_version(int argc, VALUE* argv, VALUE self) {
|
|
1262
1263
|
|
1263
1264
|
// nm_delete(tmp); // This seems to enrage the garbage collector (because rb_tmp is still available). It'd be better if we could force it to free immediately, but no sweat.
|
1264
1265
|
|
1265
|
-
nm_unregister_value(rb_tmp);
|
1266
|
+
nm_unregister_value(&rb_tmp);
|
1266
1267
|
nm_unregister_values(slice_argv, dim);
|
1267
1268
|
}
|
1268
1269
|
|
@@ -1275,15 +1276,15 @@ static VALUE nm_init_new_version(int argc, VALUE* argv, VALUE self) {
|
|
1275
1276
|
}
|
1276
1277
|
|
1277
1278
|
if (!NIL_P(hash)) {
|
1278
|
-
NM_CONSERVATIVE(nm_unregister_value(capacity_num));
|
1279
|
-
NM_CONSERVATIVE(nm_unregister_value(default_val_num));
|
1279
|
+
NM_CONSERVATIVE(nm_unregister_value(&capacity_num));
|
1280
|
+
NM_CONSERVATIVE(nm_unregister_value(&default_val_num));
|
1280
1281
|
}
|
1281
1282
|
|
1282
|
-
NM_CONSERVATIVE(nm_unregister_value(shape_ary));
|
1283
|
-
NM_CONSERVATIVE(nm_unregister_value(initial_ary));
|
1284
|
-
NM_CONSERVATIVE(nm_unregister_value(hash));
|
1283
|
+
NM_CONSERVATIVE(nm_unregister_value(&shape_ary));
|
1284
|
+
NM_CONSERVATIVE(nm_unregister_value(&initial_ary));
|
1285
|
+
NM_CONSERVATIVE(nm_unregister_value(&hash));
|
1285
1286
|
|
1286
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
1287
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
1287
1288
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1288
1289
|
nm_unregister_storage(stype, nmatrix->storage);
|
1289
1290
|
|
@@ -1327,12 +1328,12 @@ static VALUE nm_init_new_version(int argc, VALUE* argv, VALUE self) {
|
|
1327
1328
|
* shortcuts.rb.
|
1328
1329
|
*/
|
1329
1330
|
static VALUE nm_init(int argc, VALUE* argv, VALUE nm) {
|
1330
|
-
NM_CONSERVATIVE(nm_register_value(nm));
|
1331
|
+
NM_CONSERVATIVE(nm_register_value(&nm));
|
1331
1332
|
NM_CONSERVATIVE(nm_register_values(argv, argc));
|
1332
1333
|
|
1333
1334
|
if (argc <= 3) { // Call the new constructor unless all four arguments are given (or the 7-arg version is given)
|
1334
1335
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1335
|
-
NM_CONSERVATIVE(nm_unregister_value(nm));
|
1336
|
+
NM_CONSERVATIVE(nm_unregister_value(&nm));
|
1336
1337
|
return nm_init_new_version(argc, argv, nm);
|
1337
1338
|
}
|
1338
1339
|
|
@@ -1353,12 +1354,12 @@ static VALUE nm_init(int argc, VALUE* argv, VALUE nm) {
|
|
1353
1354
|
if (argc == 7) {
|
1354
1355
|
if (stype == nm::YALE_STORE) {
|
1355
1356
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1356
|
-
NM_CONSERVATIVE(nm_unregister_value(nm));
|
1357
|
+
NM_CONSERVATIVE(nm_unregister_value(&nm));
|
1357
1358
|
return nm_init_yale_from_old_yale(argv[1], argv[2], argv[3], argv[4], argv[5], argv[6], nm);
|
1358
1359
|
|
1359
1360
|
} else {
|
1360
1361
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1361
|
-
NM_CONSERVATIVE(nm_unregister_value(nm));
|
1362
|
+
NM_CONSERVATIVE(nm_unregister_value(&nm));
|
1362
1363
|
rb_raise(rb_eArgError, "Expected 2-4 arguments (or 7 for internal Yale creation)");
|
1363
1364
|
}
|
1364
1365
|
}
|
@@ -1440,7 +1441,7 @@ static VALUE nm_init(int argc, VALUE* argv, VALUE nm) {
|
|
1440
1441
|
}
|
1441
1442
|
|
1442
1443
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1443
|
-
NM_CONSERVATIVE(nm_unregister_value(nm));
|
1444
|
+
NM_CONSERVATIVE(nm_unregister_value(&nm));
|
1444
1445
|
|
1445
1446
|
return nm;
|
1446
1447
|
}
|
@@ -1474,8 +1475,8 @@ NMATRIX* nm_cast_with_ctype_args(NMATRIX* self, nm::stype_t new_stype, nm::dtype
|
|
1474
1475
|
* Copy constructor for changing dtypes and stypes.
|
1475
1476
|
*/
|
1476
1477
|
VALUE nm_cast(VALUE self, VALUE new_stype_symbol, VALUE new_dtype_symbol, VALUE init) {
|
1477
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
1478
|
-
NM_CONSERVATIVE(nm_register_value(init));
|
1478
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
1479
|
+
NM_CONSERVATIVE(nm_register_value(&init));
|
1479
1480
|
|
1480
1481
|
nm::dtype_t new_dtype = nm_dtype_from_rbsymbol(new_dtype_symbol);
|
1481
1482
|
nm::stype_t new_stype = nm_stype_from_rbsymbol(new_stype_symbol);
|
@@ -1494,8 +1495,8 @@ VALUE nm_cast(VALUE self, VALUE new_stype_symbol, VALUE new_dtype_symbol, VALUE
|
|
1494
1495
|
VALUE to_return = Data_Wrap_Struct(CLASS_OF(self), nm_mark, nm_delete, m);
|
1495
1496
|
|
1496
1497
|
nm_unregister_nmatrix(m);
|
1497
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
1498
|
-
NM_CONSERVATIVE(nm_unregister_value(init));
|
1498
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
1499
|
+
NM_CONSERVATIVE(nm_unregister_value(&init));
|
1499
1500
|
return to_return;
|
1500
1501
|
|
1501
1502
|
}
|
@@ -1504,7 +1505,7 @@ VALUE nm_cast(VALUE self, VALUE new_stype_symbol, VALUE new_dtype_symbol, VALUE
|
|
1504
1505
|
* Copy constructor for transposing.
|
1505
1506
|
*/
|
1506
1507
|
static VALUE nm_init_transposed(VALUE self) {
|
1507
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
1508
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
1508
1509
|
|
1509
1510
|
static STORAGE* (*storage_copy_transposed[nm::NUM_STYPES])(const STORAGE* rhs_base) = {
|
1510
1511
|
nm_dense_storage_copy_transposed,
|
@@ -1519,7 +1520,7 @@ static VALUE nm_init_transposed(VALUE self) {
|
|
1519
1520
|
VALUE to_return = Data_Wrap_Struct(CLASS_OF(self), nm_mark, nm_delete, lhs);
|
1520
1521
|
|
1521
1522
|
nm_unregister_nmatrix(lhs);
|
1522
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
1523
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
1523
1524
|
return to_return;
|
1524
1525
|
}
|
1525
1526
|
|
@@ -1527,16 +1528,16 @@ static VALUE nm_init_transposed(VALUE self) {
|
|
1527
1528
|
* Copy constructor for no change of dtype or stype (used for #initialize_copy hook).
|
1528
1529
|
*/
|
1529
1530
|
static VALUE nm_init_copy(VALUE copy, VALUE original) {
|
1530
|
-
NM_CONSERVATIVE(nm_register_value(copy));
|
1531
|
-
NM_CONSERVATIVE(nm_register_value(original));
|
1531
|
+
NM_CONSERVATIVE(nm_register_value(©));
|
1532
|
+
NM_CONSERVATIVE(nm_register_value(&original));
|
1532
1533
|
|
1533
1534
|
NMATRIX *lhs, *rhs;
|
1534
1535
|
|
1535
1536
|
CheckNMatrixType(original);
|
1536
1537
|
|
1537
1538
|
if (copy == original) {
|
1538
|
-
NM_CONSERVATIVE(nm_unregister_value(copy));
|
1539
|
-
NM_CONSERVATIVE(nm_unregister_value(original));
|
1539
|
+
NM_CONSERVATIVE(nm_unregister_value(©));
|
1540
|
+
NM_CONSERVATIVE(nm_unregister_value(&original));
|
1540
1541
|
return copy;
|
1541
1542
|
}
|
1542
1543
|
|
@@ -1549,8 +1550,8 @@ static VALUE nm_init_copy(VALUE copy, VALUE original) {
|
|
1549
1550
|
CAST_TABLE(ttable);
|
1550
1551
|
lhs->storage = ttable[lhs->stype][rhs->stype](rhs->storage, rhs->storage->dtype, NULL);
|
1551
1552
|
|
1552
|
-
NM_CONSERVATIVE(nm_unregister_value(copy));
|
1553
|
-
NM_CONSERVATIVE(nm_unregister_value(original));
|
1553
|
+
NM_CONSERVATIVE(nm_unregister_value(©));
|
1554
|
+
NM_CONSERVATIVE(nm_unregister_value(&original));
|
1554
1555
|
|
1555
1556
|
return copy;
|
1556
1557
|
}
|
@@ -1687,7 +1688,7 @@ static VALUE nm_write(int argc, VALUE* argv, VALUE self) {
|
|
1687
1688
|
}
|
1688
1689
|
|
1689
1690
|
NM_CONSERVATIVE(nm_register_values(argv, argc));
|
1690
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
1691
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
1691
1692
|
|
1692
1693
|
VALUE file = argv[0],
|
1693
1694
|
symm = argc == 1 ? Qnil : argv[1];
|
@@ -1699,7 +1700,7 @@ static VALUE nm_write(int argc, VALUE* argv, VALUE self) {
|
|
1699
1700
|
|
1700
1701
|
if (nmatrix->storage->dtype == nm::RUBYOBJ) {
|
1701
1702
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1702
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
1703
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
1703
1704
|
rb_raise(rb_eNotImpError, "Ruby Object writing is not implemented yet");
|
1704
1705
|
}
|
1705
1706
|
|
@@ -1714,12 +1715,12 @@ static VALUE nm_write(int argc, VALUE* argv, VALUE self) {
|
|
1714
1715
|
// Check arguments before starting to write.
|
1715
1716
|
if (nmatrix->stype == nm::LIST_STORE) {
|
1716
1717
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1717
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
1718
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
1718
1719
|
rb_raise(nm_eStorageTypeError, "cannot save list matrix; cast to yale or dense first");
|
1719
1720
|
}
|
1720
1721
|
if (symm_ != nm::NONSYMM) {
|
1721
1722
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1722
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
1723
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
1723
1724
|
|
1724
1725
|
if (dim != 2) rb_raise(rb_eArgError, "symmetry/triangularity not defined for a non-2D matrix");
|
1725
1726
|
if (nmatrix->storage->shape[0] != nmatrix->storage->shape[1])
|
@@ -1768,7 +1769,7 @@ static VALUE nm_write(int argc, VALUE* argv, VALUE self) {
|
|
1768
1769
|
f.close();
|
1769
1770
|
|
1770
1771
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1771
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
1772
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
1772
1773
|
|
1773
1774
|
return Qtrue;
|
1774
1775
|
}
|
@@ -1788,7 +1789,7 @@ static VALUE nm_read(int argc, VALUE* argv, VALUE self) {
|
|
1788
1789
|
using std::ifstream;
|
1789
1790
|
|
1790
1791
|
NM_CONSERVATIVE(nm_register_values(argv, argc));
|
1791
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
1792
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
1792
1793
|
|
1793
1794
|
VALUE file, force_;
|
1794
1795
|
|
@@ -1799,7 +1800,7 @@ static VALUE nm_read(int argc, VALUE* argv, VALUE self) {
|
|
1799
1800
|
|
1800
1801
|
if (!RB_FILE_EXISTS(file)) { // FIXME: Errno::ENOENT
|
1801
1802
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1802
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
1803
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
1803
1804
|
rb_raise(rb_get_errno_exc("ENOENT"), "%s", RSTRING_PTR(file));
|
1804
1805
|
}
|
1805
1806
|
|
@@ -1821,7 +1822,7 @@ static VALUE nm_read(int argc, VALUE* argv, VALUE self) {
|
|
1821
1822
|
fver = fmajor * 10000 + fminor * 100 + release;
|
1822
1823
|
if (fver > ver && force == false) {
|
1823
1824
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1824
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
1825
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
1825
1826
|
rb_raise(rb_eIOError, "File was created in newer version of NMatrix than current (%u.%u.%u)", fmajor, fminor, frelease);
|
1826
1827
|
}
|
1827
1828
|
if (null16 != 0) rb_warn("nm_read: Expected zero padding was not zero (0)\n");
|
@@ -1868,7 +1869,7 @@ static VALUE nm_read(int argc, VALUE* argv, VALUE self) {
|
|
1868
1869
|
read_padded_yale_elements(f, reinterpret_cast<YALE_STORAGE*>(s), length, symm, dtype);
|
1869
1870
|
} else {
|
1870
1871
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1871
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
1872
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
1872
1873
|
rb_raise(nm_eStorageTypeError, "please convert to yale or dense before saving");
|
1873
1874
|
}
|
1874
1875
|
|
@@ -1882,7 +1883,7 @@ static VALUE nm_read(int argc, VALUE* argv, VALUE self) {
|
|
1882
1883
|
|
1883
1884
|
nm_unregister_nmatrix(nm);
|
1884
1885
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
1885
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
1886
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
1886
1887
|
nm_unregister_storage(stype, s);
|
1887
1888
|
|
1888
1889
|
switch(stype) {
|
@@ -1987,7 +1988,7 @@ static VALUE nm_mset(int argc, VALUE* argv, VALUE self) {
|
|
1987
1988
|
if ((size_t)(argc) > NM_DIM(self)+1) {
|
1988
1989
|
rb_raise(rb_eArgError, "wrong number of arguments (%d for %lu)", argc, effective_dim(NM_STORAGE(self))+1);
|
1989
1990
|
} else {
|
1990
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
1991
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
1991
1992
|
NM_CONSERVATIVE(nm_register_values(argv, argc));
|
1992
1993
|
|
1993
1994
|
SLICE* slice = get_slice(dim, argc-1, argv, NM_STORAGE(self)->shape);
|
@@ -2004,7 +2005,7 @@ static VALUE nm_mset(int argc, VALUE* argv, VALUE self) {
|
|
2004
2005
|
|
2005
2006
|
to_return = argv[argc-1];
|
2006
2007
|
|
2007
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2008
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2008
2009
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
2009
2010
|
}
|
2010
2011
|
|
@@ -2019,22 +2020,22 @@ static VALUE nm_mset(int argc, VALUE* argv, VALUE self) {
|
|
2019
2020
|
* The two matrices must be of the same stype (for now). If dtype differs, an upcast will occur.
|
2020
2021
|
*/
|
2021
2022
|
static VALUE nm_multiply(VALUE left_v, VALUE right_v) {
|
2022
|
-
NM_CONSERVATIVE(nm_register_value(left_v));
|
2023
|
-
NM_CONSERVATIVE(nm_register_value(right_v));
|
2023
|
+
NM_CONSERVATIVE(nm_register_value(&left_v));
|
2024
|
+
NM_CONSERVATIVE(nm_register_value(&right_v));
|
2024
2025
|
|
2025
2026
|
NMATRIX *left, *right;
|
2026
2027
|
|
2027
2028
|
UnwrapNMatrix( left_v, left );
|
2028
2029
|
|
2029
2030
|
if (NM_RUBYVAL_IS_NUMERIC(right_v)) {
|
2030
|
-
NM_CONSERVATIVE(nm_unregister_value(left_v));
|
2031
|
-
NM_CONSERVATIVE(nm_unregister_value(right_v));
|
2031
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_v));
|
2032
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_v));
|
2032
2033
|
return matrix_multiply_scalar(left, right_v);
|
2033
2034
|
}
|
2034
2035
|
|
2035
2036
|
else if (TYPE(right_v) == T_ARRAY) {
|
2036
|
-
NM_CONSERVATIVE(nm_unregister_value(left_v));
|
2037
|
-
NM_CONSERVATIVE(nm_unregister_value(right_v));
|
2037
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_v));
|
2038
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_v));
|
2038
2039
|
rb_raise(rb_eNotImpError, "please convert array to nx1 or 1xn NMatrix first");
|
2039
2040
|
}
|
2040
2041
|
|
@@ -2045,38 +2046,38 @@ static VALUE nm_multiply(VALUE left_v, VALUE right_v) {
|
|
2045
2046
|
// work like vector dot product for 1dim
|
2046
2047
|
if (left->storage->dim == 1 && right->storage->dim == 1) {
|
2047
2048
|
if (left->storage->shape[0] != right->storage->shape[0]) {
|
2048
|
-
NM_CONSERVATIVE(nm_unregister_value(left_v));
|
2049
|
-
NM_CONSERVATIVE(nm_unregister_value(right_v));
|
2049
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_v));
|
2050
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_v));
|
2050
2051
|
rb_raise(rb_eArgError, "The left- and right-hand sides of the operation must have the same dimensionality.");
|
2051
2052
|
} else {
|
2052
2053
|
VALUE result = elementwise_op(nm::EW_MUL, left_v, right_v);
|
2053
2054
|
VALUE to_return = rb_funcall(result, rb_intern("sum"),0);
|
2054
|
-
NM_CONSERVATIVE(nm_unregister_value(left_v));
|
2055
|
-
NM_CONSERVATIVE(nm_unregister_value(right_v));
|
2055
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_v));
|
2056
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_v));
|
2056
2057
|
return to_return;
|
2057
2058
|
}
|
2058
2059
|
}
|
2059
2060
|
|
2060
2061
|
if (left->storage->shape[1] != right->storage->shape[0]) {
|
2061
|
-
NM_CONSERVATIVE(nm_unregister_value(left_v));
|
2062
|
-
NM_CONSERVATIVE(nm_unregister_value(right_v));
|
2062
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_v));
|
2063
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_v));
|
2063
2064
|
rb_raise(rb_eArgError, "incompatible dimensions");
|
2064
2065
|
}
|
2065
2066
|
|
2066
2067
|
if (left->stype != right->stype) {
|
2067
|
-
NM_CONSERVATIVE(nm_unregister_value(left_v));
|
2068
|
-
NM_CONSERVATIVE(nm_unregister_value(right_v));
|
2068
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_v));
|
2069
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_v));
|
2069
2070
|
rb_raise(rb_eNotImpError, "matrices must have same stype");
|
2070
2071
|
}
|
2071
2072
|
|
2072
|
-
NM_CONSERVATIVE(nm_unregister_value(left_v));
|
2073
|
-
NM_CONSERVATIVE(nm_unregister_value(right_v));
|
2073
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_v));
|
2074
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_v));
|
2074
2075
|
return matrix_multiply(left, right);
|
2075
2076
|
|
2076
2077
|
}
|
2077
2078
|
|
2078
|
-
NM_CONSERVATIVE(nm_unregister_value(left_v));
|
2079
|
-
NM_CONSERVATIVE(nm_unregister_value(right_v));
|
2079
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_v));
|
2080
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_v));
|
2080
2081
|
|
2081
2082
|
return Qnil;
|
2082
2083
|
}
|
@@ -2104,7 +2105,7 @@ static VALUE nm_dim(VALUE self) {
|
|
2104
2105
|
* Get the shape (dimensions) of a matrix.
|
2105
2106
|
*/
|
2106
2107
|
static VALUE nm_shape(VALUE self) {
|
2107
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
2108
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
2108
2109
|
STORAGE* s = NM_STORAGE(self);
|
2109
2110
|
|
2110
2111
|
// Copy elements into a VALUE array and then use those to create a Ruby array with rb_ary_new4.
|
@@ -2114,7 +2115,7 @@ static VALUE nm_shape(VALUE self) {
|
|
2114
2115
|
shape[index] = INT2FIX(s->shape[index]);
|
2115
2116
|
|
2116
2117
|
nm_unregister_values(shape, s->dim);
|
2117
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2118
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2118
2119
|
return rb_ary_new4(s->dim, shape);
|
2119
2120
|
}
|
2120
2121
|
|
@@ -2126,7 +2127,7 @@ static VALUE nm_shape(VALUE self) {
|
|
2126
2127
|
* Get the offset (slice position) of a matrix. Typically all zeros, unless you have a reference slice.
|
2127
2128
|
*/
|
2128
2129
|
static VALUE nm_offset(VALUE self) {
|
2129
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
2130
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
2130
2131
|
STORAGE* s = NM_STORAGE(self);
|
2131
2132
|
|
2132
2133
|
// Copy elements into a VALUE array and then use those to create a Ruby array with rb_ary_new4.
|
@@ -2136,7 +2137,7 @@ static VALUE nm_offset(VALUE self) {
|
|
2136
2137
|
offset[index] = INT2FIX(s->offset[index]);
|
2137
2138
|
|
2138
2139
|
nm_unregister_values(offset, s->dim);
|
2139
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2140
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2140
2141
|
return rb_ary_new4(s->dim, offset);
|
2141
2142
|
}
|
2142
2143
|
|
@@ -2155,7 +2156,7 @@ static VALUE nm_supershape(VALUE self) {
|
|
2155
2156
|
}
|
2156
2157
|
else s = s->src;
|
2157
2158
|
|
2158
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
2159
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
2159
2160
|
|
2160
2161
|
VALUE* shape = NM_ALLOCA_N(VALUE, s->dim);
|
2161
2162
|
nm_register_values(shape, s->dim);
|
@@ -2163,7 +2164,7 @@ static VALUE nm_supershape(VALUE self) {
|
|
2163
2164
|
shape[index] = INT2FIX(s->shape[index]);
|
2164
2165
|
|
2165
2166
|
nm_unregister_values(shape, s->dim);
|
2166
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2167
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2167
2168
|
return rb_ary_new4(s->dim, shape);
|
2168
2169
|
}
|
2169
2170
|
|
@@ -2174,9 +2175,9 @@ static VALUE nm_supershape(VALUE self) {
|
|
2174
2175
|
* Get the storage type (stype) of a matrix, e.g., :yale, :dense, or :list.
|
2175
2176
|
*/
|
2176
2177
|
static VALUE nm_stype(VALUE self) {
|
2177
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
2178
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
2178
2179
|
VALUE stype = ID2SYM(rb_intern(STYPE_NAMES[NM_STYPE(self)]));
|
2179
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2180
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2180
2181
|
return stype;
|
2181
2182
|
}
|
2182
2183
|
|
@@ -2227,9 +2228,9 @@ static VALUE nm_xslice(int argc, VALUE* argv, void* (*slice_func)(const STORAGE*
|
|
2227
2228
|
} else {
|
2228
2229
|
|
2229
2230
|
NM_CONSERVATIVE(nm_register_values(argv, argc));
|
2230
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
2231
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
2231
2232
|
|
2232
|
-
nm_register_value(result);
|
2233
|
+
nm_register_value(&result);
|
2233
2234
|
|
2234
2235
|
SLICE* slice = get_slice(NM_DIM(self), argc, argv, s->shape);
|
2235
2236
|
|
@@ -2256,9 +2257,9 @@ static VALUE nm_xslice(int argc, VALUE* argv, void* (*slice_func)(const STORAGE*
|
|
2256
2257
|
free_slice(slice);
|
2257
2258
|
}
|
2258
2259
|
|
2259
|
-
nm_unregister_value(result);
|
2260
|
+
nm_unregister_value(&result);
|
2260
2261
|
NM_CONSERVATIVE(nm_unregister_values(argv, argc));
|
2261
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2262
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2262
2263
|
|
2263
2264
|
return result;
|
2264
2265
|
}
|
@@ -2268,7 +2269,7 @@ static VALUE nm_xslice(int argc, VALUE* argv, void* (*slice_func)(const STORAGE*
|
|
2268
2269
|
//////////////////////
|
2269
2270
|
|
2270
2271
|
static VALUE unary_op(nm::unaryop_t op, VALUE self) {
|
2271
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
2272
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
2272
2273
|
NMATRIX* left;
|
2273
2274
|
UnwrapNMatrix(self, left);
|
2274
2275
|
std::string sym;
|
@@ -2285,7 +2286,7 @@ static VALUE unary_op(nm::unaryop_t op, VALUE self) {
|
|
2285
2286
|
break;
|
2286
2287
|
}
|
2287
2288
|
|
2288
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2289
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2289
2290
|
return rb_funcall(self, rb_intern(sym.c_str()), 0);
|
2290
2291
|
}
|
2291
2292
|
|
@@ -2302,8 +2303,8 @@ static void check_dims_and_shape(VALUE left_val, VALUE right_val) {
|
|
2302
2303
|
|
2303
2304
|
static VALUE elementwise_op(nm::ewop_t op, VALUE left_val, VALUE right_val) {
|
2304
2305
|
|
2305
|
-
NM_CONSERVATIVE(nm_register_value(left_val));
|
2306
|
-
NM_CONSERVATIVE(nm_register_value(right_val));
|
2306
|
+
NM_CONSERVATIVE(nm_register_value(&left_val));
|
2307
|
+
NM_CONSERVATIVE(nm_register_value(&right_val));
|
2307
2308
|
|
2308
2309
|
NMATRIX* left;
|
2309
2310
|
NMATRIX* result;
|
@@ -2325,13 +2326,13 @@ static VALUE elementwise_op(nm::ewop_t op, VALUE left_val, VALUE right_val) {
|
|
2325
2326
|
sym = "__list_scalar_" + nm::EWOP_NAMES[op] + "__";
|
2326
2327
|
break;
|
2327
2328
|
default:
|
2328
|
-
NM_CONSERVATIVE(nm_unregister_value(left_val));
|
2329
|
-
NM_CONSERVATIVE(nm_unregister_value(right_val));
|
2329
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_val));
|
2330
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_val));
|
2330
2331
|
rb_raise(rb_eNotImpError, "unknown storage type requested scalar element-wise operation");
|
2331
2332
|
}
|
2332
2333
|
VALUE symv = rb_intern(sym.c_str());
|
2333
|
-
NM_CONSERVATIVE(nm_unregister_value(left_val));
|
2334
|
-
NM_CONSERVATIVE(nm_unregister_value(right_val));
|
2334
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_val));
|
2335
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_val));
|
2335
2336
|
return rb_funcall(left_val, symv, 1, right_val);
|
2336
2337
|
|
2337
2338
|
} else {
|
@@ -2355,32 +2356,32 @@ static VALUE elementwise_op(nm::ewop_t op, VALUE left_val, VALUE right_val) {
|
|
2355
2356
|
sym = "__list_elementwise_" + nm::EWOP_NAMES[op] + "__";
|
2356
2357
|
break;
|
2357
2358
|
default:
|
2358
|
-
NM_CONSERVATIVE(nm_unregister_value(left_val));
|
2359
|
-
NM_CONSERVATIVE(nm_unregister_value(right_val));
|
2359
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_val));
|
2360
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_val));
|
2360
2361
|
rb_raise(rb_eNotImpError, "unknown storage type requested element-wise operation");
|
2361
2362
|
}
|
2362
2363
|
|
2363
2364
|
VALUE symv = rb_intern(sym.c_str());
|
2364
|
-
NM_CONSERVATIVE(nm_unregister_value(left_val));
|
2365
|
-
NM_CONSERVATIVE(nm_unregister_value(right_val));
|
2365
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_val));
|
2366
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_val));
|
2366
2367
|
return rb_funcall(left_val, symv, 1, right_val);
|
2367
2368
|
|
2368
2369
|
} else {
|
2369
|
-
NM_CONSERVATIVE(nm_unregister_value(left_val));
|
2370
|
-
NM_CONSERVATIVE(nm_unregister_value(right_val));
|
2370
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_val));
|
2371
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_val));
|
2371
2372
|
rb_raise(rb_eArgError, "Element-wise operations are not currently supported between matrices with differing stypes.");
|
2372
2373
|
}
|
2373
2374
|
}
|
2374
2375
|
|
2375
|
-
NM_CONSERVATIVE(nm_unregister_value(left_val));
|
2376
|
-
NM_CONSERVATIVE(nm_unregister_value(right_val));
|
2376
|
+
NM_CONSERVATIVE(nm_unregister_value(&left_val));
|
2377
|
+
NM_CONSERVATIVE(nm_unregister_value(&right_val));
|
2377
2378
|
return Data_Wrap_Struct(CLASS_OF(left_val), nm_mark, nm_delete, result);
|
2378
2379
|
}
|
2379
2380
|
|
2380
2381
|
static VALUE noncom_elementwise_op(nm::noncom_ewop_t op, VALUE self, VALUE other, VALUE flip) {
|
2381
2382
|
|
2382
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
2383
|
-
NM_CONSERVATIVE(nm_register_value(other));
|
2383
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
2384
|
+
NM_CONSERVATIVE(nm_register_value(&other));
|
2384
2385
|
|
2385
2386
|
NMATRIX* self_nm;
|
2386
2387
|
NMATRIX* result;
|
@@ -2402,12 +2403,12 @@ static VALUE noncom_elementwise_op(nm::noncom_ewop_t op, VALUE self, VALUE other
|
|
2402
2403
|
sym = "__list_scalar_" + nm::NONCOM_EWOP_NAMES[op] + "__";
|
2403
2404
|
break;
|
2404
2405
|
default:
|
2405
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2406
|
-
NM_CONSERVATIVE(nm_unregister_value(other));
|
2406
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2407
|
+
NM_CONSERVATIVE(nm_unregister_value(&other));
|
2407
2408
|
rb_raise(rb_eNotImpError, "unknown storage type requested scalar element-wise operation");
|
2408
2409
|
}
|
2409
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2410
|
-
NM_CONSERVATIVE(nm_unregister_value(other));
|
2410
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2411
|
+
NM_CONSERVATIVE(nm_unregister_value(&other));
|
2411
2412
|
return rb_funcall(self, rb_intern(sym.c_str()), 2, other, flip);
|
2412
2413
|
|
2413
2414
|
} else {
|
@@ -2431,22 +2432,22 @@ static VALUE noncom_elementwise_op(nm::noncom_ewop_t op, VALUE self, VALUE other
|
|
2431
2432
|
sym = "__list_elementwise_" + nm::NONCOM_EWOP_NAMES[op] + "__";
|
2432
2433
|
break;
|
2433
2434
|
default:
|
2434
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2435
|
-
NM_CONSERVATIVE(nm_unregister_value(other));
|
2435
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2436
|
+
NM_CONSERVATIVE(nm_unregister_value(&other));
|
2436
2437
|
rb_raise(rb_eNotImpError, "unknown storage type requested element-wise operation");
|
2437
2438
|
}
|
2438
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2439
|
-
NM_CONSERVATIVE(nm_unregister_value(other));
|
2439
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2440
|
+
NM_CONSERVATIVE(nm_unregister_value(&other));
|
2440
2441
|
return rb_funcall(self, rb_intern(sym.c_str()), 2, other, flip);
|
2441
2442
|
|
2442
2443
|
} else {
|
2443
|
-
nm_unregister_value(self);
|
2444
|
-
nm_unregister_value(other);
|
2444
|
+
nm_unregister_value(&self);
|
2445
|
+
nm_unregister_value(&other);
|
2445
2446
|
rb_raise(rb_eArgError, "Element-wise operations are not currently supported between matrices with differing stypes.");
|
2446
2447
|
}
|
2447
2448
|
}
|
2448
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2449
|
-
NM_CONSERVATIVE(nm_unregister_value(other));
|
2449
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2450
|
+
NM_CONSERVATIVE(nm_unregister_value(&other));
|
2450
2451
|
return Data_Wrap_Struct(CLASS_OF(self), nm_mark, nm_delete, result);
|
2451
2452
|
}
|
2452
2453
|
|
@@ -2461,7 +2462,7 @@ bool is_ref(const NMATRIX* matrix) {
|
|
2461
2462
|
* Helper function for nm_symmetric and nm_hermitian.
|
2462
2463
|
*/
|
2463
2464
|
static VALUE is_symmetric(VALUE self, bool hermitian) {
|
2464
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
2465
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
2465
2466
|
|
2466
2467
|
NMATRIX* m;
|
2467
2468
|
UnwrapNMatrix(self, m);
|
@@ -2477,12 +2478,12 @@ static VALUE is_symmetric(VALUE self, bool hermitian) {
|
|
2477
2478
|
|
2478
2479
|
} else {
|
2479
2480
|
// TODO: Implement, at the very least, yale_is_symmetric. Model it after yale/transp.template.c.
|
2480
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2481
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2481
2482
|
rb_raise(rb_eNotImpError, "symmetric? and hermitian? only implemented for dense currently");
|
2482
2483
|
}
|
2483
2484
|
|
2484
2485
|
}
|
2485
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
2486
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
2486
2487
|
return Qfalse;
|
2487
2488
|
}
|
2488
2489
|
|
@@ -2524,10 +2525,10 @@ nm::dtype_t nm_dtype_min_fixnum(int64_t v) {
|
|
2524
2525
|
* Helper for nm_dtype_min(), handling rationals.
|
2525
2526
|
*/
|
2526
2527
|
nm::dtype_t nm_dtype_min_rational(VALUE vv) {
|
2527
|
-
NM_CONSERVATIVE(nm_register_value(vv));
|
2528
|
+
NM_CONSERVATIVE(nm_register_value(&vv));
|
2528
2529
|
nm::Rational128* v = NM_ALLOCA_N(nm::Rational128, 1);
|
2529
2530
|
rubyval_to_cval(vv, nm::RATIONAL128, v);
|
2530
|
-
NM_CONSERVATIVE(nm_unregister_value(vv));
|
2531
|
+
NM_CONSERVATIVE(nm_unregister_value(&vv));
|
2531
2532
|
int64_t i = std::max(std::abs(v->n), v->d);
|
2532
2533
|
if (i <= SHRT_MAX) return nm::INT16;
|
2533
2534
|
else if (i <= INT_MAX) return nm::INT32;
|
@@ -2685,7 +2686,7 @@ static SLICE* get_slice(size_t dim, int argc, VALUE* arg, size_t* shape) {
|
|
2685
2686
|
|
2686
2687
|
} else if (TYPE(arg[t]) == T_HASH) { // 3:5 notation (inclusive)
|
2687
2688
|
VALUE begin_end = rb_funcall(v, rb_intern("shift"), 0); // rb_hash_shift
|
2688
|
-
nm_register_value(begin_end);
|
2689
|
+
nm_register_value(&begin_end);
|
2689
2690
|
|
2690
2691
|
if (rb_ary_entry(begin_end, 0) >= 0)
|
2691
2692
|
slice->coords[r] = FIX2INT(rb_ary_entry(begin_end, 0));
|
@@ -2698,7 +2699,7 @@ static SLICE* get_slice(size_t dim, int argc, VALUE* arg, size_t* shape) {
|
|
2698
2699
|
|
2699
2700
|
if (RHASH_EMPTY_P(v)) t++; // go on to the next
|
2700
2701
|
slice->single = false;
|
2701
|
-
nm_unregister_value(begin_end);
|
2702
|
+
nm_unregister_value(&begin_end);
|
2702
2703
|
|
2703
2704
|
} else if (CLASS_OF(v) == rb_cRange) {
|
2704
2705
|
rb_range_values(arg[t], &beg, &end, &excl);
|
@@ -2786,7 +2787,7 @@ static nm::dtype_t interpret_dtype(int argc, VALUE* argv, nm::stype_t stype) {
|
|
2786
2787
|
* Convert an Ruby value or an array of Ruby values into initial C values.
|
2787
2788
|
*/
|
2788
2789
|
static void* interpret_initial_value(VALUE arg, nm::dtype_t dtype) {
|
2789
|
-
NM_CONSERVATIVE(nm_register_value(arg));
|
2790
|
+
NM_CONSERVATIVE(nm_register_value(&arg));
|
2790
2791
|
|
2791
2792
|
unsigned int index;
|
2792
2793
|
void* init_val;
|
@@ -2804,7 +2805,7 @@ static void* interpret_initial_value(VALUE arg, nm::dtype_t dtype) {
|
|
2804
2805
|
init_val = rubyobj_to_cval(arg, dtype);
|
2805
2806
|
}
|
2806
2807
|
|
2807
|
-
NM_CONSERVATIVE(nm_unregister_value(arg));
|
2808
|
+
NM_CONSERVATIVE(nm_unregister_value(&arg));
|
2808
2809
|
return init_val;
|
2809
2810
|
}
|
2810
2811
|
|
@@ -2815,7 +2816,7 @@ static void* interpret_initial_value(VALUE arg, nm::dtype_t dtype) {
|
|
2815
2816
|
* array describing the shape, which must be freed manually.
|
2816
2817
|
*/
|
2817
2818
|
static size_t* interpret_shape(VALUE arg, size_t* dim) {
|
2818
|
-
NM_CONSERVATIVE(nm_register_value(arg));
|
2819
|
+
NM_CONSERVATIVE(nm_register_value(&arg));
|
2819
2820
|
size_t* shape;
|
2820
2821
|
|
2821
2822
|
if (TYPE(arg) == T_ARRAY) {
|
@@ -2834,11 +2835,11 @@ static size_t* interpret_shape(VALUE arg, size_t* dim) {
|
|
2834
2835
|
shape[1] = FIX2UINT(arg);
|
2835
2836
|
|
2836
2837
|
} else {
|
2837
|
-
nm_unregister_value(arg);
|
2838
|
+
nm_unregister_value(&arg);
|
2838
2839
|
rb_raise(rb_eArgError, "Expected an array of numbers or a single Fixnum for matrix shape");
|
2839
2840
|
}
|
2840
2841
|
|
2841
|
-
NM_CONSERVATIVE(nm_unregister_value(arg));
|
2842
|
+
NM_CONSERVATIVE(nm_unregister_value(&arg));
|
2842
2843
|
return shape;
|
2843
2844
|
}
|
2844
2845
|
|
@@ -2987,7 +2988,7 @@ static VALUE nm_det_exact(VALUE self) {
|
|
2987
2988
|
return Qnil;
|
2988
2989
|
}
|
2989
2990
|
|
2990
|
-
NM_CONSERVATIVE(nm_register_value(self));
|
2991
|
+
NM_CONSERVATIVE(nm_register_value(&self));
|
2991
2992
|
|
2992
2993
|
// Calculate the determinant and then assign it to the return value
|
2993
2994
|
void* result = NM_ALLOCA_N(char, DTYPE_SIZES[NM_DTYPE(self)]);
|
@@ -3001,7 +3002,7 @@ static VALUE nm_det_exact(VALUE self) {
|
|
3001
3002
|
if (dtype == nm::RUBYOBJ) {
|
3002
3003
|
nm_unregister_values(reinterpret_cast<VALUE*>(result), 1);
|
3003
3004
|
}
|
3004
|
-
NM_CONSERVATIVE(nm_unregister_value(self));
|
3005
|
+
NM_CONSERVATIVE(nm_unregister_value(&self));
|
3005
3006
|
|
3006
3007
|
return to_return;
|
3007
3008
|
}
|