nimbus 1.0 → 1.0.1
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- data/lib/nimbus/application.rb +2 -2
- data/lib/nimbus/forest.rb +1 -1
- metadata +1 -1
data/lib/nimbus/application.rb
CHANGED
@@ -93,7 +93,7 @@ module Nimbus
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def output_tree_errors_file(forest)
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File.open(@config.output_tree_errors_file , 'w') {|f|
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1.upto(forest.tree_errors.size) do |te|
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-
f.write("generalization error for tree
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+
f.write("generalization error for tree #{te}: #{forest.tree_errors[te-1].round(5)}\n")
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end
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}
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Nimbus.message "* Generalization errors for every tree saved to:"
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@@ -126,7 +126,7 @@ module Nimbus
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def output_snp_importances_file(forest)
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File.open(@config.output_snp_importances_file , 'w') {|f|
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forest.snp_importances.sort.each{|p|
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-
f.write("SNP
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+
f.write("SNP #{p[0]}: #{p[1].round(5)}\n")
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}
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}
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Nimbus.message "* SNP importances for the forest saved to:"
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data/lib/nimbus/forest.rb
CHANGED
@@ -41,7 +41,7 @@ module Nimbus
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tree = Tree.new @options.tree
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@trees << tree.seed(@options.training_set.individuals, tree_individuals_bag, @options.training_set.ids_fenotypes)
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@tree_errors << tree.generalization_error_from_oob(tree_out_of_bag)
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-
@tree_snp_importances << tree.estimate_importances(tree_out_of_bag)
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+
@tree_snp_importances << tree.estimate_importances(tree_out_of_bag)
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acumulate_predictions tree.predictions
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Nimbus.clear_line!
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end
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