ngs-ci 0.0.1.a
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- checksums.yaml +7 -0
- data/.coveralls.yml +1 -0
- data/.gitignore +15 -0
- data/.rspec +1 -0
- data/.travis.yml +19 -0
- data/Gemfile +4 -0
- data/LICENSE.txt +674 -0
- data/README.md +43 -0
- data/Rakefile +6 -0
- data/TODO.md +31 -0
- data/TODO.org +39 -0
- data/bin/ngs-ci +125 -0
- data/lib/NGSCI/calculator.rb +289 -0
- data/lib/NGSCI/cmd.rb +23 -0
- data/lib/NGSCI/read.rb +31 -0
- data/lib/NGSCI/version.rb +3 -0
- data/lib/NGSCI.rb +31 -0
- data/ngs-ci.gemspec +35 -0
- data/spec/lib/NGSCI_spec.rb +10 -0
- data/spec/lib/bin_spec.rb +51 -0
- data/spec/lib/calculator_spec.rb +316 -0
- data/spec/lib/cmd_spec.rb +17 -0
- data/spec/lib/read_spec.rb +35 -0
- data/spec/spec_helper.rb +11 -0
- data/spec/test_files/empty.bam +0 -0
- data/spec/test_files/test.bam +0 -0
- data/spec/test_files/test.bam.bai +0 -0
- data/spec/test_files/test.fa +2 -0
- metadata +209 -0
checksums.yaml
ADDED
@@ -0,0 +1,7 @@
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1
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+
---
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2
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+
SHA1:
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3
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+
metadata.gz: 85d1cc53730fb57307136cd2313e81c60e55aad2
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4
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+
data.tar.gz: c6724259d4f7709b728bb7df07a3cbdcaa352173
|
5
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+
SHA512:
|
6
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+
metadata.gz: 334662df0f16af26954bc29d99bfe6ecb59289f892a34de669d57be2125482a557ce4657086f167cf50afd31f00cbdc8ae8e41e2905c7269a25b3a41adce33a9
|
7
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+
data.tar.gz: 354bd86f5d1274c0cf26dc266b41f348d8ff26d1572101bd3196c72dc8aaad9f994d5703730777a91c8efa30d392bf8217d14b5a5c8a40f7998b2af2ff456ad3
|
data/.coveralls.yml
ADDED
@@ -0,0 +1 @@
|
|
1
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+
service_name: travis-ci
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data/.gitignore
ADDED
data/.rspec
ADDED
@@ -0,0 +1 @@
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1
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+
--color
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data/.travis.yml
ADDED
@@ -0,0 +1,19 @@
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1
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+
language: ruby
|
2
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+
rvm:
|
3
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+
- "2.0.0"
|
4
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+
- "2.1.0"
|
5
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+
before_script:
|
6
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+
- bundle install
|
7
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+
os:
|
8
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+
- linux
|
9
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+
- osx
|
10
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+
#matrix:
|
11
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+
# allow_failures:
|
12
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+
# - os: osx
|
13
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+
# - rvm: "2.2.0"
|
14
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+
notifications:
|
15
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+
email:
|
16
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+
recipients:
|
17
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+
- mrals@udel.edu
|
18
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+
on_failure: change
|
19
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+
on_success: never
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data/Gemfile
ADDED